EY728837

Overview
NameEY728837
Unique NameEY728837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_SHIB3 (Glucose-1-phosphate adenylyltransferase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=glgC PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.201e-20
Identity = 62/182 (34.07%), Postives = 92/182 (50.55%), Query Frame = 2
Query:   53 HRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN---DFGSEVIPGATSIGMRVQAYLY-------------DGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML 550
            H E  A  TVA +P+  + A+AFG+M +DE  +IIEF EKP                + ++ +K    +ASMGIYV   D +  LL +     N   DFG ++IP  T  G+   AY +             + YW D+GT++A++ ANL +    +P+   YDR+ PI T    LPP+K +
Sbjct:  156 HVEKGARCTVACMPVPIEEASAFGVMAVDENDKIIEFVEKPANPP-----------SMPNDPSKS---LASMGIYVFDADYLYELLEEDDRDENSSHDFGKDLIPKITEAGL---AYAHPFPLSCVQSDPDAEPYWRDVGTLKAYWKANLDLA-SVVPELDMYDRNWPIRTYNESLPPAKFV 319          

HSP 2 Score: 24.2534 bits (51), Expect = 3.201e-20
Identity = 10/18 (55.56%), Postives = 12/18 (66.67%), Query Frame = 3
Query:   12 DHLYRMDYER-LFRHTEK 62
            DH+Y+ DY R L  H EK
Sbjct:  142 DHIYKQDYSRMLIDHVEK 159          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_KLEP3 (Glucose-1-phosphate adenylyltransferase OS=Klebsiella pneumoniae (strain 342) GN=glgC PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.201e-20
Identity = 64/182 (35.16%), Postives = 89/182 (48.90%), Query Frame = 2
Query:   53 HRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN---DFGSEVIPGATSIGMRVQAYLY-------------DGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML 550
            H E  A  TVA +P+  + A+AFG+M +DE  +IIEF EKP      AM  D T              +ASMGIY+     +  LL +     N   DFG ++IP  T  GM   AY +             + YW D+GT+EA++ ANL +     P+   YD++ PI T    LPP+K +
Sbjct:  156 HVEKGARCTVACMPVPIEEASAFGVMAVDENEKIIEFVEKPANP--PAMPTDPT------------KSLASMGIYIFDAAYLYELLEEDDRNENSSHDFGKDIIPKITEAGM---AYAHPFPLSCVQSDPNAEPYWRDVGTLEAYWKANLDLA-SVTPELDMYDQNWPIRTHMESLPPAKFV 319          

HSP 2 Score: 24.2534 bits (51), Expect = 3.201e-20
Identity = 10/18 (55.56%), Postives = 12/18 (66.67%), Query Frame = 3
Query:   12 DHLYRMDYER-LFRHTEK 62
            DH+Y+ DY R L  H EK
Sbjct:  142 DHIYKQDYSRMLIDHVEK 159          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_BURP8 (Glucose-1-phosphate adenylyltransferase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=glgC PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.203e-20
Identity = 59/183 (32.24%), Postives = 86/183 (46.99%), Query Frame = 2
Query:   41 IIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGA---NDFGSEVIPGATSIGMRVQAYL----------YDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML 550
            ++  H E+ AD TV  + +    A AFG+M +DEE R+  F EKP          D                +ASMGIYV + D + +LL D        +DFG ++IP   + G  +               + YW D+GTI+A++ ANL +    IP    YDR+ PI+T    LPP+K +
Sbjct:  146 MVMDHVESKADCTVGCIEVPRMEAVAFGVMHVDEERRVTGFVEKPADPPAMPGHPDIA--------------LASMGIYVFNADYLYSLLEDNITSVATDHDFGKDIIPRVVTSGNAIAHPFSMSCVSSDPSVEPYWRDVGTIDAYWAANLDLA-STIPSLDLYDRNWPIWTHQEQLPPAKFV 313          

HSP 2 Score: 23.483 bits (49), Expect = 3.203e-20
Identity = 7/11 (63.64%), Postives = 10/11 (90.91%), Query Frame = 3
Query:   12 DHLYRMDYERL 44
            DH+Y+MDY R+
Sbjct:  136 DHIYKMDYTRM 146          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_BURXL (Glucose-1-phosphate adenylyltransferase OS=Burkholderia xenovorans (strain LB400) GN=glgC PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.203e-20
Identity = 60/183 (32.79%), Postives = 87/183 (47.54%), Query Frame = 2
Query:   41 IIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGA---NDFGSEVIPGATSIGMRVQAYL----------YDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML 550
            +I  H E+ AD TV  + +    A AFG+M +DE  R+  F EKP        + DT               +ASMGIYV S D + +LL +        +DFG +++P   + G  +               + YW D+GTI+A++ ANL +    IP    YDRS PI+T    LPP+K +
Sbjct:  146 MIADHAESGADCTVGCIEVPRMDAVAFGVMHVDENRRVTGFVEKPADPPAIPGRPDTA--------------LASMGIYVFSADYLYSLLEENISSVDTDHDFGKDILPRVVTQGTAIAHPFSMSCVSSDPNVEPYWRDVGTIDAYWAANLDLA-STIPTLDLYDRSWPIWTYQEQLPPAKFV 313          

HSP 2 Score: 23.483 bits (49), Expect = 3.203e-20
Identity = 7/11 (63.64%), Postives = 10/11 (90.91%), Query Frame = 3
Query:   12 DHLYRMDYERL 44
            DH+Y+MDY R+
Sbjct:  136 DHIYKMDYTRM 146          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_DESHD (Glucose-1-phosphate adenylyltransferase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=glgC PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.207e-20
Identity = 57/185 (30.81%), Postives = 99/185 (53.51%), Query Frame = 2
Query:   38 EIIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLN-LLRDKFP--GANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLD-ADVTDSVIG 580
            E++  H++  A++T++A+ +  + A+ FG+M  D  GRII F EKP   +                       +ASMG+Y+ + DV+   LL D+      +DFG  V+P     G R+ +YL+ GYW D+GTIE++YNAN+ + ++   D  F++    +++    L P  + + A + +S+IG
Sbjct:  137 EMLSCHKQKHAEVTLSAIAVPWEEASRFGVMVTDAGGRIIRFEEKPPRPESN---------------------LASMGVYIFNWDVLKEALLEDERDPQSDHDFGKNVLPRLLQQGRRLYSYLFHGYWRDVGTIESYYNANMEVLQEERVD-KFFELKQRVFSNEEILAPQHLGERAKIHNSLIG 299          

HSP 2 Score: 22.7126 bits (47), Expect = 3.207e-20
Identity = 10/18 (55.56%), Postives = 13/18 (72.22%), Query Frame = 3
Query:   12 DHLYRMD-YERLFRHTEK 62
            DH+Y+MD YE L  H +K
Sbjct:  128 DHIYQMDYYEMLSCHKQK 145          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_SERP5 (Glucose-1-phosphate adenylyltransferase OS=Serratia proteamaculans (strain 568) GN=glgC PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.671e-20
Identity = 59/179 (32.96%), Postives = 86/179 (48.04%), Query Frame = 2
Query:   53 HRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKF--PGA-NDFGSEVIPGAT----------SIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML 550
            H E  A  TVA LP+    A+ FG+M++DE   I+EF EKP          D +              +ASMGIY+ + D +  LL +    PG+ +DFG ++IP  T          ++           YW D+GT+EA++ ANL +     P+   YDR+ PI T    LPP+K +
Sbjct:  156 HVEKGAQCTVACLPVPRDEASEFGVMEVDENDLILEFLEKPSNPPPMPGNPDMS--------------LASMGIYIFNADYLFQLLEEDMSTPGSTHDFGKDLIPKITAQKAAWAHPFTLSCVTSNPELPPYWRDVGTLEAYWRANLDLA-SVTPELDMYDRAWPIRTHMEPLPPAKFV 319          

HSP 2 Score: 26.1794 bits (56), Expect = 3.671e-20
Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = 3
Query:   12 DHLYRMDYER-LFRHTEK 62
            DH+Y+MDY R L  H EK
Sbjct:  142 DHIYKMDYSRMLIDHVEK 159          

HSP 3 Score: 22.7126 bits (47), Expect = 3.671e-20
Identity = 9/32 (28.12%), Postives = 18/32 (56.25%), Query Frame = 3
Query:  585 GCVIKNCKIHHSVVGLRSCISEGAIIEDTLLM 680
            GC++    + HSV+  R  ++    I+ T+L+
Sbjct:  337 GCIVSGSVVVHSVLFPRVRVNSFCTIDSTVLL 368          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_LACLA (Glucose-1-phosphate adenylyltransferase OS=Lactococcus lactis subsp. lactis GN=glgC PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.688e-20
Identity = 54/168 (32.14%), Postives = 84/168 (50.00%), Query Frame = 2
Query:   41 IIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN---DFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFY---------NANLGITKKPIPDFSFYDRSAP 508
            ++++H+E +A +TV+ + +  + A+ FG+M  D+  RIIEF EKPK                     +    +ASMGIY+ +   +  +L + +   N   DFG +VIP     G  V AY + GYW+D+GTI++ +         N  L IT K    +S  D SAP
Sbjct:  137 MLESHKEREASLTVSVMEVPLEEASRFGIMNTDDNDRIIEFEEKPK---------------------EPKSNLASMGIYIFNWKRLREVLVNGYSKGNPMEDFGGDVIPAYIEAGENVFAYRFKGYWKDVGTIDSLHQSSMEFLDLNNELNITDKSWRIYSHNDISAP 283          

HSP 2 Score: 28.4906 bits (62), Expect = 3.688e-20
Identity = 11/40 (27.50%), Postives = 22/40 (55.00%), Query Frame = 3
Query:  576 LGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGSRLL 695
            +G+GC +    +H S++     + EG +IED+ +M    +
Sbjct:  297 VGDGCYVDGTVLH-SILSQNVHVQEGTVIEDSFIMSGTFI 335          

HSP 3 Score: 24.2534 bits (51), Expect = 3.688e-20
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 3
Query:   12 DHLYRMDYERLFR-HTEK 62
            DH+Y+MDYE +   H E+
Sbjct:  127 DHIYKMDYEAMLESHKER 144          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_DEIRA (Glucose-1-phosphate adenylyltransferase OS=Deinococcus radiodurans GN=glgC PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.966e-20
Identity = 62/184 (33.70%), Postives = 93/184 (50.54%), Query Frame = 2
Query:   41 IIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN---DFGSEVIPGATSIGMRVQAYLY-----------DGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML 550
            +++ H ET AD+T+AA PM + +A  FG+M++DE  R+ EF EK        +    TI G  D        + SMG Y+ S+  +  LL     G     DFG  VIP A S G  VQAY +           + YW D+GT++A++ AN+ +     P+F  Y+   P+ T   + PP+K +
Sbjct:  140 MLEKHIETRADVTIAAYPMPQSQAHQFGVMQVDERWRVTEFHEK--------VPDPPTIPGQADLS------LTSMGNYIFSRRALEELLEASISGQETGYDFGHNVIPRALSDGYHVQAYDFHKNPIPGQERPNTYWRDVGTLDAYFEANMDLVSVN-PEFDIYNPEWPLRTSSEFSPPAKFV 308          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_ENTS8 (Glucose-1-phosphate adenylyltransferase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=glgC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.165e-20
Identity = 61/182 (33.52%), Postives = 90/182 (49.45%), Query Frame = 2
Query:   53 HRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR---DKFPGANDFGSEVIPGATSIGMRVQAYLY-------------DGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML 550
            H E  A  TVA LP+    A AFG+M +DE  ++I+F EKP          +   +  DD +A     +ASMGIY+   D +  LL    +    ++DFG ++IP  T  G   +AY +             + YW D+GT+EA++ ANL +     P+   YD+  PI T    LPP+K +
Sbjct:  156 HVEKGARCTVACLPVPVAEARAFGVMAVDENSKVIDFVEKP---------ANPPSMPCDDTKA-----LASMGIYIFDADYLYELLEEDDENESSSHDFGKDIIPKVTYSG---EAYAHPFPLSCVQSDPNAEPYWRDVGTLEAYWKANLDLA-SVTPELDMYDQDWPIRTHMESLPPAKFV 319          

HSP 2 Score: 24.2534 bits (51), Expect = 4.165e-20
Identity = 10/18 (55.56%), Postives = 12/18 (66.67%), Query Frame = 3
Query:   12 DHLYRMDYER-LFRHTEK 62
            DH+Y+ DY R L  H EK
Sbjct:  142 DHIYKQDYSRMLIDHVEK 159          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_LACLM (Glucose-1-phosphate adenylyltransferase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=glgC PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.779e-20
Identity = 59/188 (31.38%), Postives = 93/188 (49.47%), Query Frame = 2
Query:   41 IIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN---DFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFY---------NANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTD 568
            ++++H+E +A +TV+ + +  + A+ FG+M  D+  RIIEF EKPK                     +    +ASMGIY+ +   +  +L + +   N   DFG +VIP     G  V AY + GYW+D+GTI++ +         N  L IT K    +S  D SAP +   +    SK+ +A V D
Sbjct:  137 MLESHKEREASLTVSVMEVPLEEASRFGIMNTDDNDRIIEFEEKPK---------------------EPKSNLASMGIYIFNWKRLREVLVNGYSKGNPMEDFGGDVIPAYIEAGENVFAYRFKGYWKDVGTIDSLHQSSMEFLDLNNELNITDKSWRIYSHNDISAPQFITEK----SKVKNALVGD 299          

HSP 2 Score: 27.7202 bits (60), Expect = 4.779e-20
Identity = 12/40 (30.00%), Postives = 21/40 (52.50%), Query Frame = 3
Query:  576 LGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGSRLL 695
            +G+GC +    IH S++     + EG  IED+ +M    +
Sbjct:  297 VGDGCYVDGTVIH-SILSQNVHVQEGTTIEDSFIMSGTFI 335          

HSP 3 Score: 24.2534 bits (51), Expect = 4.779e-20
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 3
Query:   12 DHLYRMDYERLFR-HTEK 62
            DH+Y+MDYE +   H E+
Sbjct:  127 DHIYKMDYEAMLESHKER 144          
The following BLAST results are available for this feature:
BLAST of EY728837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 310
Match NameE-valueIdentityDescription
GLGC_SHIB33.201e-2034.07Glucose-1-phosphate adenylyltransferase OS=Shigell... [more]
GLGC_KLEP33.201e-2035.16Glucose-1-phosphate adenylyltransferase OS=Klebsie... [more]
GLGC_BURP83.203e-2032.24Glucose-1-phosphate adenylyltransferase OS=Burkhol... [more]
GLGC_BURXL3.203e-2032.79Glucose-1-phosphate adenylyltransferase OS=Burkhol... [more]
GLGC_DESHD3.207e-2030.81Glucose-1-phosphate adenylyltransferase OS=Desulfi... [more]
GLGC_SERP53.671e-2032.96Glucose-1-phosphate adenylyltransferase OS=Serrati... [more]
GLGC_LACLA3.688e-2032.14Glucose-1-phosphate adenylyltransferase OS=Lactoco... [more]
GLGC_DEIRA3.966e-2033.70Glucose-1-phosphate adenylyltransferase OS=Deinoco... [more]
GLGC_ENTS84.165e-2033.52Glucose-1-phosphate adenylyltransferase OS=Enterob... [more]
GLGC_LACLM4.779e-2031.38Glucose-1-phosphate adenylyltransferase OS=Lactoco... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-009-C05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728837 ID=EY728837; Name=EY728837; organism=Citrus sinensis; type=EST; length=901bp
CCACGCGTCCGGATCATTTGTACCGAATGGACTATGAGAGATTATTCAGG
CACACAGAGAAACTGATGCGGATATCACAGTAGCTGCGCTGCCAATGGAT
GAAAAACGGGCTACTGCTTTTGGTCTGATGAAGATCGATGAAGAGGGACG
CATAATTGAATTTTCTGAGAAACCAAAAGGAGAGCAACTTAAAGCTATGA
AGGTTGATACCACCATATTAGGTCTTGATGATGAGAGAGCTAAAGAGATG
CCTTACATAGCAAGTATGGGTATTTATGTCATCAGCAAAGATGTGATGTT
AAATCTGCTAAGGGATAAATTTCCTGGAGCTAATGATTTTGGAAGTGAAG
TTATCCCTGGTGCAACTTCCATTGGGATGAGAGTGCAAGCATATTTATAT
GATGGCTACTGGGAAGACATTGGAACAATTGAGGCTTTCTACAATGCGAA
TCTGGGGATCACCAAAAAGCCAATTCCGGATTTCAGCTTCTATGACCGTT
CTGCTCCAATCTATACACAGCCTAGATATCTACCTCCTTCTAAGATGCTT
GATGCTGATGTCACTGATAGTGTAATTGGGTGAAGGCTGTGTGATTAAGA
ATTGCAAAATTCACCATTCTGTTGTTGGGCTTCGATCTTGCATATCAGAA
GGTGCAATTATCGAAGATACTTTACTTATGGGGAGCAGATTATTATGAGA
CGGATGCGGACAGGAGGTTTTTGGGCTGCAAGGGTATTGTTCCATTTGGT
ATTGGCAGAATTCTCACATCAAGAGAGCCATAATCCACANNATGCTCGAA
TGGGGGATTATGTGAAAATTCTTCACAGTGACAGTGTGCAAAAACCACCA
GGGAAACAGATGGATACTCATCAAAACCGGGATTGTTCCATAATCAGGAT
G
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