EY728837

Overview
NameEY728837
Unique NameEY728837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_STRS7 (Glucose-1-phosphate adenylyltransferase OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=glgC PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.726e-18
Identity = 61/184 (33.15%), Postives = 90/184 (48.91%), Query Frame = 2
Query:   38 EIIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG---ANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML-DADVTDSVI 577
            +++Q H+   A +TVA + +  K A  FG+M  D   RI+EF EKP     K+ K                   ASMGIY+ +   +  +L D        +DFG  VIP     G RV  Y + GYW+D+GTIE+ + AN+    +        DRS  IY++    PP+ +  DA+V DS++
Sbjct:  136 DMLQTHKANMASLTVAVIDVPLKEAGRFGIMNTDTNDRIVEFEEKPANP--KSTK-------------------ASMGIYIFNWQRLRTMLVDAEKNNIDMSDFGQHVIPSYLESGERVYTYNFKGYWKDVGTIESLWEANMEYIGEE-NALDSRDRSWKIYSKNHIAPPNFITEDAEVKDSLV 297          

HSP 2 Score: 22.3274 bits (46), Expect = 4.726e-18
Identity = 6/13 (46.15%), Postives = 11/13 (84.62%), Query Frame = 3
Query:   12 DHLYRMDYERLFR 50
            DH+Y+MDY+ + +
Sbjct:  127 DHIYKMDYDDMLQ 139          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_CORJK (Glucose-1-phosphate adenylyltransferase OS=Corynebacterium jeikeium (strain K411) GN=glgC PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.047e-18
Identity = 58/196 (29.59%), Postives = 98/196 (50.00%), Query Frame = 2
Query:   38 EIIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN---DFGSEVIPGATSIGMRVQAYLYD--------------GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYT-QPRYLPPSKMLDADVTDS 571
            +++Q H +  A +TVA L +    ATAFG+++ D++ +I +F EKP          +   +  D E +      ASMG YV +   +++ L++     N   D G ++IP     G   +AY+YD              GYW D+GT++AFY A++ +     P F+ Y++  PI+T +   LPP+K +   +  S
Sbjct:  136 QMVQEHIKAGAGVTVAGLRVPRHEATAFGVIQADDDNKIEQFLEKP---------AEPPSVPDDPEVS-----FASMGNYVFTAQTLIDALKEDSEDENSNHDMGGDIIPRLVDRG---EAYVYDFSNNYVPGETERDKGYWRDVGTVDAFYEAHMDLISVH-PVFNLYNQQWPIHTAETGNLPPAKFVKGGIAQS 313          

HSP 2 Score: 25.0238 bits (53), Expect = 5.047e-18
Identity = 10/32 (31.25%), Postives = 18/32 (56.25%), Query Frame = 3
Query:  585 GCVIKNCKIHHSVVGLRSCISEGAIIEDTLLM 680
            GC+I    + +SV+     + EGA +E  ++M
Sbjct:  319 GCIISAGTVRNSVLSENVVVEEGASVEGCVIM 350          

HSP 3 Score: 21.1718 bits (43), Expect = 5.047e-18
Identity = 7/11 (63.64%), Postives = 10/11 (90.91%), Query Frame = 3
Query:   12 DHLYRMDYERL 44
            DH+YRMD E++
Sbjct:  127 DHVYRMDPEQM 137          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_SACD2 (Glucose-1-phosphate adenylyltransferase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=glgC PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.127e-18
Identity = 60/184 (32.61%), Postives = 93/184 (50.54%), Query Frame = 2
Query:   41 IIQAHRETDADITVAALPMD-EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKF---PGANDFGSEVIPGATSIGMRVQAYLY-------DGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDAD 559
            II  H ET AD+TV+ + +  E+ A +FG+M +D++ RII F EKP+     A K   T              +ASMG YV + + + + LR         +DFG  +IP   +  + V AY +         YW D+GT+++F+ AN+ +   P P  + Y+   PI+T    LPP+K +  D
Sbjct:  147 IIAHHVETGADLTVSCIEVPIEEAAGSFGVMTVDDDNRIIRFDEKPQRPTELANKPGYT--------------LASMGNYVFNTEFLFDQLRKDAADPDSEHDFGKNIIPNIIAEKL-VSAYRFRDHDTNETAYWRDVGTLDSFWEANMELV-SPNPSLNLYNHDWPIWTYQTQLPPAKFVFDD 314          

HSP 2 Score: 22.7126 bits (47), Expect = 6.127e-18
Identity = 7/14 (50.00%), Postives = 10/14 (71.43%), Query Frame = 3
Query:   12 DHLYRMDYERLFRH 53
            DH+Y+MDY  +  H
Sbjct:  137 DHVYQMDYGAIIAH 150          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_NITMU (Glucose-1-phosphate adenylyltransferase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=glgC PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.523e-18
Identity = 55/184 (29.89%), Postives = 95/184 (51.63%), Query Frame = 2
Query:   38 EIIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLL---RDKFPGANDFGSEVIPGATSIGMRVQAYLYDG----------YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML 550
            +++  H    A++T+A + +  + A+AFG+M + ++GR+ +F+EKP         V T + G      +    + SMGIYV + D + + L    D    ++DFG ++IP       RV  + +            YW D+GT+EA++ ANL +  +  PD + YD+  PI+T    LPP+K +
Sbjct:  147 KLLADHIAKSAEMTIACIDLPLEEASAFGVMSVTKDGRVTDFTEKP--------SVPTAVPG------RPGYALVSMGIYVFNADFLFDQLIRDHDDPNSSHDFGKDLIPHLVP-RSRVFTHRFSDSCVNMVSGVPYWRDVGTVEAYWEANLDLV-QVTPDLNLYDQDWPIWTHQEQLPPAKFV 314          

HSP 2 Score: 22.7126 bits (47), Expect = 6.523e-18
Identity = 7/11 (63.64%), Postives = 10/11 (90.91%), Query Frame = 3
Query:   12 DHLYRMDYERL 44
            DH+Y+MDY +L
Sbjct:  138 DHVYKMDYAKL 148          

HSP 3 Score: 20.7866 bits (42), Expect = 6.523e-18
Identity = 6/32 (18.75%), Postives = 18/32 (56.25%), Query Frame = 3
Query:  585 GCVIKNCKIHHSVVGLRSCISEGAIIEDTLLM 680
            GC+I    +  S++     +   +++ED++++
Sbjct:  332 GCIISGATVRRSLLFSNVQVRSYSVLEDSVIL 363          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_RHIME (Glucose-1-phosphate adenylyltransferase OS=Rhizobium meliloti GN=glgC PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 7.968e-18
Identity = 58/186 (31.18%), Postives = 90/186 (48.39%), Query Frame = 2
Query:   41 IIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKF---PGANDFGSEVIPGATSIGMRV----------QAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDAD 559
            ++Q H ++ AD+TV  L +    AT FG+M +D   RII F EKP          D   +  + + A     +ASMGIYV     ++++LR        + DFG ++IP     G  V            +  + YW D+GTI+A++ AN+ +T    P+   YD + PI+T     PP+K +  D
Sbjct:  145 MLQQHVDSGADVTVGCLEVPRMEATGFGVMHVDNADRIIAFVEKP---------ADPPGIPGNPDMA-----LASMGIYVFHTKFLMDMLRRDAADPKSSRDFGKDIIPYIVEHGKAVAHRFTHSCVRSDFEREAYWRDVGTIDAYWQANIDLT-HITPELDIYDSTWPIWTFSEIKPPAKFVHDD 315          

HSP 2 Score: 23.0978 bits (48), Expect = 7.968e-18
Identity = 7/13 (53.85%), Postives = 11/13 (84.62%), Query Frame = 3
Query:   12 DHLYRMDYERLFR 50
            DH+Y+MDYE + +
Sbjct:  135 DHVYKMDYELMLQ 147          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_RHOP5 (Glucose-1-phosphate adenylyltransferase OS=Rhodopseudomonas palustris (strain BisA53) GN=glgC PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.036e-17
Identity = 57/186 (30.65%), Postives = 88/186 (47.31%), Query Frame = 2
Query:   38 EIIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR----DKFPGANDFGSEVIPGATSIGMRVQAYLYD-----------GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML 550
            +++Q H +  A +TV  L +  K A+ FG+M +D   +I+ F EKP        K D                +ASMGIYV     +   LR    DK   ++DFG ++IP     G  V A+ +D            YW D+GT++A++ AN+ +T   +P    YD + PI+T     PP+K +
Sbjct:  144 KMLQQHVQQGAHVTVGCLEVPRKEASGFGVMHVDANDQILSFIEKPAHPPAMPDKPDMA--------------LASMGIYVFETKFLFEELRRDAADK-NSSHDFGKDIIPHIVKHGKAV-AHRFDRSCIRSHAESASYWRDVGTVDAYWAANIDLT-DIVPQLDLYDHNWPIWTYGEITPPAKFV 312          

HSP 2 Score: 25.0238 bits (53), Expect = 1.036e-17
Identity = 7/13 (53.85%), Postives = 12/13 (92.31%), Query Frame = 3
Query:   12 DHLYRMDYERLFR 50
            DH+Y+MDYE++ +
Sbjct:  135 DHIYKMDYEKMLQ 147          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_RHOPS (Glucose-1-phosphate adenylyltransferase OS=Rhodopseudomonas palustris (strain BisB5) GN=glgC PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.036e-17
Identity = 59/185 (31.89%), Postives = 91/185 (49.19%), Query Frame = 2
Query:   38 EIIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVI-SKDVMLNLLRDKF--PGANDFGSEVIPGATSIGMRVQAYLYD-----------GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML 550
            +++Q H E  AD+TV  L +    A+AFG+M +D +  I  F EKP        K D +++              SMGIYV  +K ++  L RD      ++DFG ++IP     G  V A+ +D            YW D+GT++A++ AN+ +T   +P    YDR  PI+T     PP+K +
Sbjct:  144 KMLQQHVEQGADVTVGCLEVARSEASAFGVMDVDAKDVIRSFLEKPADPPAMPGKPDKSLV--------------SMGIYVFDTKFLIEELHRDAANPDSSHDFGKDIIPYIVKHGKAV-AHHFDKSCRRSHAEDTSYWRDVGTVDAYWAANIDLT-DIVPQLDLYDREWPIWTYGEITPPAKFV 312          

HSP 2 Score: 25.409 bits (54), Expect = 1.036e-17
Identity = 9/18 (50.00%), Postives = 15/18 (83.33%), Query Frame = 3
Query:   12 DHLYRMDYERLF-RHTEK 62
            DH+Y+MDYE++  +H E+
Sbjct:  135 DHVYKMDYEKMLQQHVEQ 152          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_RHILO (Glucose-1-phosphate adenylyltransferase OS=Rhizobium loti GN=glgC PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.036e-17
Identity = 61/184 (33.15%), Postives = 93/184 (50.54%), Query Frame = 2
Query:   41 IIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVI-SKDVMLNLLRDKF-PGAN-DFGSEVIPGATSIGMRVQAYLY-----------DGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML 550
            +++ H + +AD+TV  L +    AT FG+M +D +  II F EKP             I G  D        +ASMGIYV  +K +M  L RD   PG++ DFG ++IP     G  + A+ +           + YW D+GT++A++ AN+ +T    P+   YDR  PI+T     PP+K +
Sbjct:  146 MLRQHVDANADVTVGCLEVPRMEATGFGVMHVDAKDNIIAFVEKPAD--------PPGIPGNPDFA------LASMGIYVFKTKFLMEQLRRDAAEPGSSRDFGKDIIPYIVQHGKAI-AHRFTKSCVRSTAENEAYWRDVGTVDAYWEANIDLT-DITPELDLYDRDWPIWTYAELKPPAKFV 313          

HSP 2 Score: 25.409 bits (54), Expect = 1.036e-17
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 3
Query:   12 DHLYRMDYERLFR 50
            DH+Y+MDYE + R
Sbjct:  136 DHIYKMDYEMMLR 148          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_RHOSR (Glucose-1-phosphate adenylyltransferase OS=Rhodococcus sp. (strain RHA1) GN=glgC PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.037e-17
Identity = 61/199 (30.65%), Postives = 99/199 (49.75%), Query Frame = 2
Query:   38 EIIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR---DKFPGANDFGSEVIPGATSIGMRVQAYLYD--------------GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVT-DSVIG 580
            +++Q H E+ A +TVA + +    A AFG +  DE GRI++F EKP               G  D+    M + ASMG YV +  V+++ +R   +     +D G ++IP     G   +A +YD              GYW D+GT++AFY+A++ +     P F+ Y+R  PI  +   L P+K +   +  +SV+G
Sbjct:  136 QMVQHHIESGAGVTVAGIRVPRSEAFAFGCIDSDESGRIVQFLEKPAHPP-----------GTPDD--PNMTF-ASMGNYVFTTKVLVDAIRADSENSDSDHDMGGDIIPALVEAG---EASVYDFKDNIVPGATDRDRGYWRDVGTLDAFYDAHMDLVSVH-PIFNLYNRRWPIRGETENLAPAKFVQGGLAQESVVG 316          

HSP 2 Score: 24.2534 bits (51), Expect = 1.037e-17
Identity = 8/14 (57.14%), Postives = 12/14 (85.71%), Query Frame = 3
Query:   12 DHLYRMDYERLFRH 53
            DH+YRMD E++ +H
Sbjct:  127 DHVYRMDPEQMVQH 140          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_RHOOB (Glucose-1-phosphate adenylyltransferase OS=Rhodococcus opacus (strain B4) GN=glgC PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.037e-17
Identity = 61/199 (30.65%), Postives = 99/199 (49.75%), Query Frame = 2
Query:   38 EIIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR---DKFPGANDFGSEVIPGATSIGMRVQAYLYD--------------GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVT-DSVIG 580
            +++Q H E+ A +TVA + +    A AFG +  DE GRI++F EKP               G  D+    M + ASMG YV +  V+++ +R   +     +D G ++IP     G   +A +YD              GYW D+GT++AFY+A++ +     P F+ Y+R  PI  +   L P+K +   +  +SV+G
Sbjct:  136 QMVQHHIESGAGVTVAGIRVPRSEAFAFGCIDSDESGRIVQFLEKPAHPP-----------GTPDD--PNMTF-ASMGNYVFTTKVLVDAIRADSENSDSDHDMGGDIIPALVEAG---EASVYDFKDNVVPGATDRDRGYWRDVGTLDAFYDAHMDLVSVH-PIFNLYNRRWPIRGETENLAPAKFVQGGLAQESVVG 316          

HSP 2 Score: 24.2534 bits (51), Expect = 1.037e-17
Identity = 8/14 (57.14%), Postives = 12/14 (85.71%), Query Frame = 3
Query:   12 DHLYRMDYERLFRH 53
            DH+YRMD E++ +H
Sbjct:  127 DHVYRMDPEQMVQH 140          
The following BLAST results are available for this feature:
BLAST of EY728837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 310
Match NameE-valueIdentityDescription
GLGC_STRS74.726e-1833.15Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]
GLGC_CORJK5.047e-1829.59Glucose-1-phosphate adenylyltransferase OS=Coryneb... [more]
GLGC_SACD26.127e-1832.61Glucose-1-phosphate adenylyltransferase OS=Sacchar... [more]
GLGC_NITMU6.523e-1829.89Glucose-1-phosphate adenylyltransferase OS=Nitroso... [more]
GLGC_RHIME7.968e-1831.18Glucose-1-phosphate adenylyltransferase OS=Rhizobi... [more]
GLGC_RHOP51.036e-1730.65Glucose-1-phosphate adenylyltransferase OS=Rhodops... [more]
GLGC_RHOPS1.036e-1731.89Glucose-1-phosphate adenylyltransferase OS=Rhodops... [more]
GLGC_RHILO1.036e-1733.15Glucose-1-phosphate adenylyltransferase OS=Rhizobi... [more]
GLGC_RHOSR1.037e-1730.65Glucose-1-phosphate adenylyltransferase OS=Rhodoco... [more]
GLGC_RHOOB1.037e-1730.65Glucose-1-phosphate adenylyltransferase OS=Rhodoco... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-009-C05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728837 ID=EY728837; Name=EY728837; organism=Citrus sinensis; type=EST; length=901bp
CCACGCGTCCGGATCATTTGTACCGAATGGACTATGAGAGATTATTCAGG
CACACAGAGAAACTGATGCGGATATCACAGTAGCTGCGCTGCCAATGGAT
GAAAAACGGGCTACTGCTTTTGGTCTGATGAAGATCGATGAAGAGGGACG
CATAATTGAATTTTCTGAGAAACCAAAAGGAGAGCAACTTAAAGCTATGA
AGGTTGATACCACCATATTAGGTCTTGATGATGAGAGAGCTAAAGAGATG
CCTTACATAGCAAGTATGGGTATTTATGTCATCAGCAAAGATGTGATGTT
AAATCTGCTAAGGGATAAATTTCCTGGAGCTAATGATTTTGGAAGTGAAG
TTATCCCTGGTGCAACTTCCATTGGGATGAGAGTGCAAGCATATTTATAT
GATGGCTACTGGGAAGACATTGGAACAATTGAGGCTTTCTACAATGCGAA
TCTGGGGATCACCAAAAAGCCAATTCCGGATTTCAGCTTCTATGACCGTT
CTGCTCCAATCTATACACAGCCTAGATATCTACCTCCTTCTAAGATGCTT
GATGCTGATGTCACTGATAGTGTAATTGGGTGAAGGCTGTGTGATTAAGA
ATTGCAAAATTCACCATTCTGTTGTTGGGCTTCGATCTTGCATATCAGAA
GGTGCAATTATCGAAGATACTTTACTTATGGGGAGCAGATTATTATGAGA
CGGATGCGGACAGGAGGTTTTTGGGCTGCAAGGGTATTGTTCCATTTGGT
ATTGGCAGAATTCTCACATCAAGAGAGCCATAATCCACANNATGCTCGAA
TGGGGGATTATGTGAAAATTCTTCACAGTGACAGTGTGCAAAAACCACCA
GGGAAACAGATGGATACTCATCAAAACCGGGATTGTTCCATAATCAGGAT
G
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