EY728837

Overview
NameEY728837
Unique NameEY728837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_AZOSE (Glucose-1-phosphate adenylyltransferase OS=Azoarcus sp. (strain EbN1) GN=glgC PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.842e-17
Identity = 63/199 (31.66%), Postives = 97/199 (48.74%), Query Frame = 2
Query:   38 EIIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMP-----YIASMGIYVISKDVMLNLLRDKFP-GANDFGSEVIPGA-----------TSIGMR-VQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIG 580
            ++I+ H  T AD TVAALP+  +  ++FG+++ D  GRI +F EKP                   E A+ MP      +ASMG YV S D++++ LR     G +DFG  ++P             T+  MR ++ Y    YW D+GTI+A+Y+AN   T    P F   +   PIY  P     +++ D  +  + +G
Sbjct:  137 QMIEFHIATQADATVAALPVPLEHTSSFGIIRTDSAGRIRDFREKP-------------------ESAEPMPGRPGHALASMGNYVFSADLLVDALRRAHSRGGHDFGKNLLPAMAERNRVMAYDFTTNRMRGIRDYEEPAYWRDVGTIDAYYDANFD-TLGEFPKFCMSNPHWPIYANPDQTEAAQVHDGHIRTASLG 315          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_THENN (Glucose-1-phosphate adenylyltransferase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=glgC PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.276e-17
Identity = 54/172 (31.40%), Postives = 86/172 (50.00%), Query Frame = 2
Query:   38 EIIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN---DFGSEVIPGATSIGM-RVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPS 541
            ++I  H    AD T+A + +  + A+ FG+M  D EGRI++F EKP                      K    +AS+GIYV + + +  +L +     N   DFG +VIP         + A+ +DGYW D+GTI +++ ANL +   P+P F+ YD +   +T    +PP+
Sbjct:  135 DLIDYHLLKGADGTIACMEVPLEEASRFGIMITDVEGRIVDFEEKP---------------------PKPRSNLASLGIYVFNYEFLKRVLIEDENDPNSSHDFGKDVIPKILRENKGSLYAFRFDGYWRDVGTIRSYWEANLELV-LPVPPFNLYDPNWRFFTHSEEMPPA 284          

HSP 2 Score: 22.3274 bits (46), Expect = 2.276e-17
Identity = 10/39 (25.64%), Postives = 20/39 (51.28%), Query Frame = 3
Query:  576 LGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGSRL 692
            +G+G V+KN  I        +C  E  I+ + + +G+ +
Sbjct:  318 IGKGTVVKNSVIMTRTEIGENCYLENVIVAENVKIGNNV 356          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_MYXXD (Glucose-1-phosphate adenylyltransferase OS=Myxococcus xanthus (strain DK 1622) GN=glgC PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.278e-17
Identity = 57/198 (28.79%), Postives = 95/198 (47.98%), Query Frame = 2
Query:   38 EIIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVML-NLLRD--KFPGANDFGSEVIPGATSIGMRVQAYLYD--------------GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIG 580
            +++  H    A  TVAA+P+  ++   FG++ +  +GR+ +F EKPK                          +ASMG Y+ S DV++  ++RD      A+DFG  +I   + +  R   Y+YD              GYW D+G I+ +Y +N+ + +   P F+ Y+   PI+TQP   PP+K + AD  +  +G
Sbjct:  133 QMLDFHCTKKAACTVAAIPVPIEQGREFGIIDVGPDGRMRQFLEKPKDP--------------PPMPGNPKMCLASMGNYLFSTDVLVQEVVRDAANEASAHDFGKSII---SELYKRAPVYVYDFAQNEVPGQEAKERGYWRDVGNIDVYYQSNMDLVEVD-PTFNLYNDRWPIHTQPNNYPPAKFVFADEQNHRVG 312          

HSP 2 Score: 25.0238 bits (53), Expect = 2.278e-17
Identity = 10/34 (29.41%), Postives = 20/34 (58.82%), Query Frame = 3
Query:  576 LGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLL 677
            + EGC+I    +  SV+  +  ++  + +ED+LL
Sbjct:  319 VAEGCIISGGSVRRSVLSPKVRVNSYSEVEDSLL 352          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGS_MAIZE (Glucose-1-phosphate adenylyltransferase small subunit (Fragment) OS=Zea mays GN=GLG1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.414e-17
Identity = 44/71 (61.97%), Postives = 53/71 (74.65%), Query Frame = 3
Query:  576 LGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGSRLL*D-GCGQEVFGLQGYCSIWYWQNSHIKRAII 785
            +GEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMG+    +    +++    G   I   +NSHI++AII
Sbjct:    6 IGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYAETEADKKLLAENGGIPIGIGKNSHIRKAII 76          

HSP 2 Score: 26.1794 bits (56), Expect = 2.414e-17
Identity = 11/17 (64.71%), Postives = 16/17 (94.12%), Query Frame = 2
Query:  794 ARMGDYVKILHSDSVQK 844
            AR+GD VKIL++D+VQ+
Sbjct:   80 ARIGDNVKILNADNVQE 96          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_THIDA (Glucose-1-phosphate adenylyltransferase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=glgC PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.957e-17
Identity = 59/184 (32.07%), Postives = 94/184 (51.09%), Query Frame = 2
Query:   38 EIIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRD---KFPGANDFGSEVIPGATSIGMRVQAYLY------DGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYT-QPRYLPPSKMLDAD 559
            +++  H +T AD+TV ++ +    A AFG+M +DE  RI EF+EKP+       K  T ++              SMGIYV SKD +   L +       ++DFG ++IP + S   R+ A+ +       GYW D+G +  ++  N+ +     P  + YD   PI+T QP+Y PP+K +  D
Sbjct:  159 QMLLYHVQTGADVTVGSVEVPVAEAAAFGVMSVDESLRITEFNEKPREPDSMPGKPGTALV--------------SMGIYVFSKDFLYKALIEDAGATRSSHDFGKDIIPSSIS-RARIMAFPFRDREGKPGYWRDVGALNCYWQTNMDLCSIE-PALNLYDCEWPIWTYQPQY-PPAKFIFDD 325          

HSP 2 Score: 20.4014 bits (41), Expect = 2.957e-17
Identity = 6/11 (54.55%), Postives = 9/11 (81.82%), Query Frame = 3
Query:   12 DHLYRMDYERL 44
            DH+Y MDY ++
Sbjct:  150 DHVYTMDYTQM 160          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_THEP1 (Glucose-1-phosphate adenylyltransferase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=glgC PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.959e-17
Identity = 51/172 (29.65%), Postives = 89/172 (51.74%), Query Frame = 2
Query:   38 EIIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN---DFGSEVIPGATSIGM-RVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPS 541
            ++I  H   +AD T+A + +  + A+ FG+M  + +G+I++F EKP                     AK    +AS+GIYV + + +  +L +     N   DFG +VIP      +  + A+ +DGYW D+GT+ +++ ANL +   P+P F+ YD +   +T    +PP+
Sbjct:  135 DLIDYHLLKEADGTIACMEVPIEEASRFGIMITNVDGKIVDFEEKP---------------------AKPRSNLASLGIYVFNYEFLKKVLIEDENDPNSSHDFGKDVIPRILRENLGSLYAFRFDGYWRDVGTLRSYWEANLELV-LPVPPFNLYDPNWRFFTHTEEMPPA 284          

HSP 2 Score: 22.7126 bits (47), Expect = 2.959e-17
Identity = 11/39 (28.21%), Postives = 20/39 (51.28%), Query Frame = 3
Query:  576 LGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGSRL 692
            +G G V+KN  I        +C  E  II +++ +G+ +
Sbjct:  318 IGRGTVVKNSVIMTRAEIGENCYLENVIIAESVKIGNNV 356          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_SHEFN (Glucose-1-phosphate adenylyltransferase OS=Shewanella frigidimarina (strain NCIMB 400) GN=glgC PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.960e-17
Identity = 61/185 (32.97%), Postives = 96/185 (51.89%), Query Frame = 2
Query:   41 IIQAHRETDADITVAAL--PMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR---DKFPGANDFGSEVIPGATSIGMRVQAYLYD-------GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDAD 559
            ++ AH E+ A++TV  L  P+DE  A AFG+M++D E R+I F EKP   + K++  D T+             +ASMG YV +   +   L+   +      DFG ++IP A     +V A+ +         YW D+GT+++F+ AN+ +   P P  + YD   PI+T    LPP+K +  D
Sbjct:  145 LLAAHAESGAEMTVCCLETPIDEA-AGAFGVMEVDSEHRVIGFEEKP--AEPKSIPSDPTMC------------LASMGNYVFNTKFLFEQLKKDANNEKSDRDFGKDIIP-AIIENHKVFAFPFSSAVAGQPSYWRDVGTLDSFFQANMELL-LPTPPLNLYDAKWPIWTYQEQLPPAKFVFDD 312          

HSP 2 Score: 22.7126 bits (47), Expect = 2.960e-17
Identity = 8/11 (72.73%), Postives = 9/11 (81.82%), Query Frame = 3
Query:   12 DHLYRMDYERL 44
            DH+YRMDY  L
Sbjct:  135 DHIYRMDYAGL 145          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_NOVAD (Glucose-1-phosphate adenylyltransferase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=glgC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.960e-17
Identity = 56/183 (30.60%), Postives = 87/183 (47.54%), Query Frame = 2
Query:   41 IIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKF---PGANDFGSEVIPGATSIGMRV----------QAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML 550
            +++ H E+ AD+T+  L +    AT FG+M +D    I  F EKP             I G +D        +ASMGIYV     + ++LR+       + DFG+++IP     G  V           A   + YW D+GT++A++ ANL +T   +P  + YDR  PI+T      P+K +
Sbjct:  145 MLRQHVESGADVTIGCLVVPRIEATGFGVMAVDTSDTITAFVEKPAN--------PPGIPGNEDMA------LASMGIYVFDTKFLFDILREDAADPSSSRDFGNDIIPKIVRNGKAVAHRFTASCIRAAEEIEEYWRDVGTLDAYFEANLDLT-DVVPKLNMYDRDWPIWTDQIIAAPAKFV 312          

HSP 2 Score: 25.409 bits (54), Expect = 2.960e-17
Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = 3
Query:   12 DHLYRMDYERLFR-HTE 59
            DH+Y+MDYE + R H E
Sbjct:  135 DHIYKMDYELMLRQHVE 151          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_ACIBL (Glucose-1-phosphate adenylyltransferase OS=Acidobacteria bacterium (strain Ellin345) GN=glgC PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.848e-17
Identity = 52/185 (28.11%), Postives = 94/185 (50.81%), Query Frame = 2
Query:   41 IIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN---DFGSEVIPGATSIGMRVQAYLYDG---------YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDAD 559
            +++ H+++ AD+T+A + +D      FG++ +D +  +  F EKPK  +L++    + +              ASMGIY+ + DV++ +L       N   DFG  ++P         + Y ++          YW D+GT++A+Y+ANL +     P F+ YD++ PI T  R  PP+K + A+
Sbjct:  136 MMRQHKDSGADVTLATILIDPSETRHFGVVDVDNQSHVNGFVEKPKSTELRSPYDPSKV-------------SASMGIYIFNTDVLIPVLLKDAEDPNSKHDFGHNILPKMVG---EYKIYSFNFIDENKKEALYWRDVGTLDAYYDANLDLV-SVAPVFNLYDKAWPIRTHQRQYPPAKFVFAE 303          

HSP 2 Score: 21.9422 bits (45), Expect = 3.848e-17
Identity = 6/13 (46.15%), Postives = 11/13 (84.62%), Query Frame = 3
Query:   12 DHLYRMDYERLFR 50
            DH+Y+M+Y+ + R
Sbjct:  126 DHIYKMNYDLMMR 138          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_BACSU (Glucose-1-phosphate adenylyltransferase OS=Bacillus subtilis GN=glgC PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.014e-17
Identity = 52/184 (28.26%), Postives = 94/184 (51.09%), Query Frame = 2
Query:   38 EIIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR--DKFP-GANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYT-QPRYLPPSKMLDADVTDSVI 577
            +++  H E  AD+T++ + +  + A+ FG+MK + +G I  F EKPK  +                       +ASMGIY+ +  ++   L   D+ P  ++DFG ++IP       ++ AY + GYW+D+GT+++ + AN+ + K+   +   ++R   IY+  P   P     DA V DS++
Sbjct:  136 KMLDYHIEKKADVTISVIEVGWEEASRFGIMKANPDGTITHFDEKPKFPKSN---------------------LASMGIYIFNWPLLKQYLEMDDQNPYSSHDFGKDIIPLLLEEKKKLSAYPFKGYWKDVGTVQSLWEANMDLLKED-SELKLFERKWKIYSVNPNQPPQFISSDAQVQDSLV 297          

HSP 2 Score: 23.0978 bits (48), Expect = 5.014e-17
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 3
Query:   12 DHLYRMDYERLF-RHTEK 62
            DH+Y+MDY ++   H EK
Sbjct:  127 DHIYKMDYGKMLDYHIEK 144          
The following BLAST results are available for this feature:
BLAST of EY728837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 310
Match NameE-valueIdentityDescription
GLGC_AZOSE1.842e-1731.66Glucose-1-phosphate adenylyltransferase OS=Azoarcu... [more]
GLGC_THENN2.276e-1731.40Glucose-1-phosphate adenylyltransferase OS=Thermot... [more]
GLGC_MYXXD2.278e-1728.79Glucose-1-phosphate adenylyltransferase OS=Myxococ... [more]
GLGS_MAIZE2.414e-1761.97Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGC_THIDA2.957e-1732.07Glucose-1-phosphate adenylyltransferase OS=Thiobac... [more]
GLGC_THEP12.959e-1729.65Glucose-1-phosphate adenylyltransferase OS=Thermot... [more]
GLGC_SHEFN2.960e-1732.97Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_NOVAD2.960e-1730.60Glucose-1-phosphate adenylyltransferase OS=Novosph... [more]
GLGC_ACIBL3.848e-1728.11Glucose-1-phosphate adenylyltransferase OS=Acidoba... [more]
GLGC_BACSU5.014e-1728.26Glucose-1-phosphate adenylyltransferase OS=Bacillu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-009-C05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728837 ID=EY728837; Name=EY728837; organism=Citrus sinensis; type=EST; length=901bp
CCACGCGTCCGGATCATTTGTACCGAATGGACTATGAGAGATTATTCAGG
CACACAGAGAAACTGATGCGGATATCACAGTAGCTGCGCTGCCAATGGAT
GAAAAACGGGCTACTGCTTTTGGTCTGATGAAGATCGATGAAGAGGGACG
CATAATTGAATTTTCTGAGAAACCAAAAGGAGAGCAACTTAAAGCTATGA
AGGTTGATACCACCATATTAGGTCTTGATGATGAGAGAGCTAAAGAGATG
CCTTACATAGCAAGTATGGGTATTTATGTCATCAGCAAAGATGTGATGTT
AAATCTGCTAAGGGATAAATTTCCTGGAGCTAATGATTTTGGAAGTGAAG
TTATCCCTGGTGCAACTTCCATTGGGATGAGAGTGCAAGCATATTTATAT
GATGGCTACTGGGAAGACATTGGAACAATTGAGGCTTTCTACAATGCGAA
TCTGGGGATCACCAAAAAGCCAATTCCGGATTTCAGCTTCTATGACCGTT
CTGCTCCAATCTATACACAGCCTAGATATCTACCTCCTTCTAAGATGCTT
GATGCTGATGTCACTGATAGTGTAATTGGGTGAAGGCTGTGTGATTAAGA
ATTGCAAAATTCACCATTCTGTTGTTGGGCTTCGATCTTGCATATCAGAA
GGTGCAATTATCGAAGATACTTTACTTATGGGGAGCAGATTATTATGAGA
CGGATGCGGACAGGAGGTTTTTGGGCTGCAAGGGTATTGTTCCATTTGGT
ATTGGCAGAATTCTCACATCAAGAGAGCCATAATCCACANNATGCTCGAA
TGGGGGATTATGTGAAAATTCTTCACAGTGACAGTGTGCAAAAACCACCA
GGGAAACAGATGGATACTCATCAAAACCGGGATTGTTCCATAATCAGGAT
G
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