EY728837

Overview
NameEY728837
Unique NameEY728837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_GEOTN (Glucose-1-phosphate adenylyltransferase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=glgC PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.101e-16
Identity = 54/187 (28.88%), Postives = 100/187 (53.48%), Query Frame = 2
Query:   41 IIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR--DKFP-GANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYT-----QPRYLPPSKMLDADVTDSVI 577
            ++  H    AD+T++ + +  + A+ FG+M  +EE  I+EF+EKP                     A+    +ASMGIY+ +  ++   L+  +  P  ++DFG +VIP       R+ AY ++GYW+D+GT+++ + AN+ +  +   +   +DRS  IY+      P+Y+ P    +A+V+DS++
Sbjct:  137 MLDYHIAKQADVTISVIEVPWEEASRFGIMNTNEEMEIVEFAEKP---------------------AEPKSNLASMGIYIFNWPLLKQYLQIDNANPHSSHDFGKDVIPMLLREKKRLFAYPFEGYWKDVGTVKSLWEANMDLLDEN-NELDLFDRSWRIYSVNPNQPPQYISP----EAEVSDSLV 297          

HSP 2 Score: 22.7126 bits (47), Expect = 1.101e-16
Identity = 6/11 (54.55%), Postives = 10/11 (90.91%), Query Frame = 3
Query:   12 DHLYRMDYERL 44
            DH+Y+MDY+ +
Sbjct:  127 DHIYKMDYQHM 137          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_BACLD (Glucose-1-phosphate adenylyltransferase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=glgC PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.102e-16
Identity = 53/184 (28.80%), Postives = 92/184 (50.00%), Query Frame = 2
Query:   38 EIIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLL-RDKFPGAN--DFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLD-ADVTDSVI 577
            ++++ H E  AD T+A + +    A  FG++  +++  I  F EKPK  +                       +ASMG+YV    V+ + L RD+   A+  DFG +VIP       R+ AY + GYW+D+GT+ + + AN+ +     P    ++R+  IY+    LPP  + D A++ +S++
Sbjct:  136 KMLEYHAEKQADATIAVIEVSWAEAGRFGILHTNDKMEITSFEEKPKYPKSN---------------------LASMGVYVFKWSVLEDALERDEKNSASSHDFGKDVIPALLEENKRLNAYPFKGYWKDVGTVRSLWEANMDLLGDH-PPLDLFERNWRIYSVSPNLPPQFVADLAEIKESLV 297          

HSP 2 Score: 24.2534 bits (51), Expect = 1.102e-16
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 3
Query:   12 DHLYRMDYERLFR-HTEK 62
            DH+Y+MDY ++   H EK
Sbjct:  127 DHIYKMDYGKMLEYHAEK 144          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_BIFA0 (Glucose-1-phosphate adenylyltransferase OS=Bifidobacterium animalis subsp. lactis (strain AD011) GN=glgC PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.121e-16
Identity = 63/205 (30.73%), Postives = 98/205 (47.80%), Query Frame = 2
Query:   38 EIIQAHRETDADITVAALPMDEKRATAFGLMKIDEE--GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN---DFGSEVIPGATSIGMRVQAYLYD--------------GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDA------DVTDSVI 577
            +++  H E+ A+ TVA +    ++++ FG++++D E    I  F EKPK         +TT  GL D   +    +ASMG YV + D + N L       N   D G ++ P       R +A +YD               YW D+GTI  FY+A++ +    IP+F+ Y+   PIYT    LPP+K + A        TDS++
Sbjct:  137 QMVNQHIESGAEFTVAGIRQPIEQSSQFGVIEVDPEHPNMIKSFQEKPK---------ETT--GLPDNPNE---ILASMGNYVANTDALFNALSIDSKAENTKHDMGGDIAP---FFAERNEAGVYDFSRNEIPGATTTDHAYWRDVGTIRQFYDAHMDLISY-IPEFNLYNMEWPIYTSSGNLPPAKFVHAAGDRIGHATDSIV 323          

HSP 2 Score: 23.483 bits (49), Expect = 1.121e-16
Identity = 7/11 (63.64%), Postives = 11/11 (100.00%), Query Frame = 3
Query:   12 DHLYRMDYERL 44
            DH+YRMD+E++
Sbjct:  128 DHVYRMDFEQM 138          

HSP 3 Score: 22.3274 bits (46), Expect = 1.121e-16
Identity = 8/31 (25.81%), Postives = 17/31 (54.84%), Query Frame = 3
Query:  585 GCVIKNCKIHHSVVGLRSCISEGAIIEDTLL 677
            G ++   +IHHSV+     +   + + D++L
Sbjct:  326 GVIVSGGEIHHSVISPNVRVHSWSQVNDSIL 356          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_CLOAB (Glucose-1-phosphate adenylyltransferase OS=Clostridium acetobutylicum GN=glgC PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.194e-16
Identity = 54/184 (29.35%), Postives = 90/184 (48.91%), Query Frame = 2
Query:   38 EIIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKF---PGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKM-LDADVTDSVI 577
            E++  H++ +AD T+A   +    A+ FG+M  DE+ RI EF EKPK                     K    +ASMGIY+ +   +   L +        NDFG  +IP   +   ++ AY ++GYW+D+GTI++ + AN+ +        + YD    IY+    +PP  +  ++DV  S++
Sbjct:  137 EMLDFHKKKNADATIAVFEVPLNEASRFGIMNTDEDDRINEFEEKPK---------------------KPKNNLASMGIYIFNWRFLKRFLEEDARDESSNNDFGKNIIPNMLNKKRKLYAYRFNGYWKDVGTIQSLWEANMDLLDDN-NSLNIYDPKWKIYSVNPTMPPQYIACNSDVKRSLV 298          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_AZOSB (Glucose-1-phosphate adenylyltransferase OS=Azoarcus sp. (strain BH72) GN=glgC PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.429e-16
Identity = 61/200 (30.50%), Postives = 97/200 (48.50%), Query Frame = 2
Query:   38 EIIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMP-----YIASMGIYVISKDVMLN-LLRDKFPGANDFGSEVIPGATSIGMRVQAYLYD-------------GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIG 580
            +++Q H +T AD TVAA+P+  ++ ++FG+++ D  GRI +F EKP                   + A+ MP      +ASMG YV S DV+++ L R    G +DFG  ++P A     R+ AY +               YW D+GTI+A+Y A+   T    P F   +   PIY  P     +++ D  +  + +G
Sbjct:  137 QMVQYHVDTHADATVAAIPIPLEQVSSFGIIRTDSAGRIRDFQEKP-------------------QSAEPMPNRPGVALASMGNYVFSTDVLVDALTRAHSKGGHDFGKNLLP-AMCESHRLMAYDFSSNRVPGIRDFEDASYWRDVGTIDAYYAAHFD-TLGECPAFCMSNPRWPIYAAPDQTEAAQVHDGHIRSASLG 315          

HSP 2 Score: 20.7866 bits (42), Expect = 1.429e-16
Identity = 6/14 (42.86%), Postives = 11/14 (78.57%), Query Frame = 3
Query:   12 DHLYRMDYERLFRH 53
            DH+YRMD  ++ ++
Sbjct:  128 DHVYRMDIRQMVQY 141          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_CLOBB (Glucose-1-phosphate adenylyltransferase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=glgC PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.431e-16
Identity = 53/184 (28.80%), Postives = 94/184 (51.09%), Query Frame = 2
Query:   38 EIIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG---ANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKM-LDADVTDSVI 577
            ++++ H+E +AD T+  + +    A+ FG+M   ++  I EF EKPK  +                       +ASMGIY+ +   +   LR+       +NDFG ++IP   + G ++ AY ++GYW+D+GTIE+ + AN+ + K      + +D+   IY+     P   +  +A VT+S+I
Sbjct:  137 KMLEFHKEKNADATIGVIEVPVNEASRFGIMNTRDDMSIYEFEEKPKIPKSN---------------------LASMGIYIFNWKTLKKYLRNDEANKGSSNDFGKDIIPSMLNDGGKMVAYPFEGYWKDVGTIESLWQANMDLLKSD-NKLNLHDQDWRIYSTNPVRPAQYIGENAKVTNSLI 298          

HSP 2 Score: 22.3274 bits (46), Expect = 1.431e-16
Identity = 8/18 (44.44%), Postives = 13/18 (72.22%), Query Frame = 3
Query:   12 DHLYRMDYERLFR-HTEK 62
            DH+Y+M+Y ++   H EK
Sbjct:  128 DHIYKMNYTKMLEFHKEK 145          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_SHEAM (Glucose-1-phosphate adenylyltransferase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=glgC PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.856e-16
Identity = 61/197 (30.96%), Postives = 99/197 (50.25%), Query Frame = 2
Query:   41 IIQAHRETDADITVAA--LPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR---DKFPGANDFGSEVIPGATSIGMRVQAYLYDG-------YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDAD------VTDSVI 577
            ++ AH ++ AD+TV    +P+ E  A +FG+M++ E+ R++ F EKP          + + L  D ER      +ASMG YV + + + + LR   +      DFG ++IP       +V AY +         YW D+GT++ F+ AN+ +   P P  + YD   PI+T    LPP+K +  D       TDS++
Sbjct:  147 MLAAHAQSGADMTVCCQEVPVAEA-AGSFGVMEVAEDMRVVGFEEKP---------ANPSCLPHDPERC-----LASMGNYVFNTEFLFDQLRKDAENVSSERDFGKDIIPSIIR-EHKVFAYAFKSGLGAGQDYWRDVGTLDTFWQANMELL-SPEPHLNLYDAKWPIWTYQEQLPPAKFVFDDEDRRGMATDSIV 326          

HSP 2 Score: 21.9422 bits (45), Expect = 1.856e-16
Identity = 7/8 (87.50%), Postives = 8/8 (100.00%), Query Frame = 3
Query:   12 DHLYRMDY 35
            DH+YRMDY
Sbjct:  137 DHVYRMDY 144          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_BACST (Glucose-1-phosphate adenylyltransferase OS=Bacillus stearothermophilus GN=glgC PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.418e-16
Identity = 54/187 (28.88%), Postives = 99/187 (52.94%), Query Frame = 2
Query:   41 IIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR--DKFP-GANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYT-----QPRYLPPSKMLDADVTDSVI 577
            ++  H    AD+T++ + +  + A+ FG+M  +EE  I+EF+EKP                     A+    +ASMGIY+ +  ++   L+  +  P  ++DFG +VIP       R  AY ++GYW+D+GT+++ + AN+ +  +   +   +DRS  IY+      P+Y+ P    +A+V+DS++
Sbjct:  137 MLDYHIAKQADVTISVIEVPWEEASRFGIMNTNEEMEIVEFAEKP---------------------AEPKSNLASMGIYIFNWPLLKQYLQIDNANPHSSHDFGKDVIPMLLREKKRPFAYPFEGYWKDVGTVKSLWEANMDLLDEN-NELDLFDRSWRIYSVNPNQPPQYISP----EAEVSDSLV 297          

HSP 2 Score: 22.7126 bits (47), Expect = 2.418e-16
Identity = 6/11 (54.55%), Postives = 10/11 (90.91%), Query Frame = 3
Query:   12 DHLYRMDYERL 44
            DH+Y+MDY+ +
Sbjct:  127 DHIYKMDYQHM 137          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_CLOD6 (Glucose-1-phosphate adenylyltransferase OS=Clostridium difficile (strain 630) GN=glgC PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.418e-16
Identity = 49/171 (28.65%), Postives = 82/171 (47.95%), Query Frame = 2
Query:   38 EIIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRD--KFPGAN--DFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPP 538
            ++++ H+E  +  T+A + +    A+ FG+M  +E+  I EF EKP                     ++    +ASMG+Y+    ++ N  ++  K P  N  DFG  +IP      + + AY + GYW D+GTI++ ++AN+ I K P       D    IYT    +PP
Sbjct:  136 KMLKFHKEKGSKATIAVIEVPWDEASRFGIMNTNEDSSIYEFEEKP---------------------SEPKSNLASMGVYIFDWKMLRNYFKEAEKNPEINYDDFGKNLIPKMLEDNVGMYAYPFKGYWRDVGTIQSLWDANMDIIKSP-ETLDLADPKWKIYTNTMAMPP 284          

HSP 2 Score: 25.409 bits (54), Expect = 2.418e-16
Identity = 9/18 (50.00%), Postives = 14/18 (77.78%), Query Frame = 3
Query:   12 DHLYRMDYERLFR-HTEK 62
            DH+Y+MDY ++ + H EK
Sbjct:  127 DHIYKMDYSKMLKFHKEK 144          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_LACPL (Glucose-1-phosphate adenylyltransferase OS=Lactobacillus plantarum GN=glgC PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.419e-16
Identity = 59/186 (31.72%), Postives = 87/186 (46.77%), Query Frame = 2
Query:   41 IIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPP------SKMLDADVTDS 571
            +++ H+E  A +TV  + +  + A  FG+M  D   RIIEF EKP  E  K+ K                   ASMGIY+ +   + + L   +       DFG  VIP   +    V AY + GYW D+GTI++ + AN+     P    +  DR   IY++   LPP      S++ +A V DS
Sbjct:  137 MLKYHQEKKASLTVGVIHVTNEEAKRFGMMNTDATDRIIEFEEKP--EHPKSDK-------------------ASMGIYIFNWPTLRDYLVKSYATDKSLEDFGKNVIPSYLANNESVYAYAFKGYWRDVGTIKSLWQANMEFL-SPHNRLNIGDRYWRIYSKAEVLPPMFLTETSQVNNAMVVDS 300          

HSP 2 Score: 25.0238 bits (53), Expect = 2.419e-16
Identity = 9/18 (50.00%), Postives = 14/18 (77.78%), Query Frame = 3
Query:   12 DHLYRMDYERLFR-HTEK 62
            DH+Y+MDY+ + + H EK
Sbjct:  127 DHIYKMDYDAMLKYHQEK 144          
The following BLAST results are available for this feature:
BLAST of EY728837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 310
Match NameE-valueIdentityDescription
GLGC_GEOTN1.101e-1628.88Glucose-1-phosphate adenylyltransferase OS=Geobaci... [more]
GLGC_BACLD1.102e-1628.80Glucose-1-phosphate adenylyltransferase OS=Bacillu... [more]
GLGC_BIFA01.121e-1630.73Glucose-1-phosphate adenylyltransferase OS=Bifidob... [more]
GLGC_CLOAB1.194e-1629.35Glucose-1-phosphate adenylyltransferase OS=Clostri... [more]
GLGC_AZOSB1.429e-1630.50Glucose-1-phosphate adenylyltransferase OS=Azoarcu... [more]
GLGC_CLOBB1.431e-1628.80Glucose-1-phosphate adenylyltransferase OS=Clostri... [more]
GLGC_SHEAM1.856e-1630.96Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_BACST2.418e-1628.88Glucose-1-phosphate adenylyltransferase OS=Bacillu... [more]
GLGC_CLOD62.418e-1628.65Glucose-1-phosphate adenylyltransferase OS=Clostri... [more]
GLGC_LACPL2.419e-1631.72Glucose-1-phosphate adenylyltransferase OS=Lactoba... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-009-C05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728837 ID=EY728837; Name=EY728837; organism=Citrus sinensis; type=EST; length=901bp
CCACGCGTCCGGATCATTTGTACCGAATGGACTATGAGAGATTATTCAGG
CACACAGAGAAACTGATGCGGATATCACAGTAGCTGCGCTGCCAATGGAT
GAAAAACGGGCTACTGCTTTTGGTCTGATGAAGATCGATGAAGAGGGACG
CATAATTGAATTTTCTGAGAAACCAAAAGGAGAGCAACTTAAAGCTATGA
AGGTTGATACCACCATATTAGGTCTTGATGATGAGAGAGCTAAAGAGATG
CCTTACATAGCAAGTATGGGTATTTATGTCATCAGCAAAGATGTGATGTT
AAATCTGCTAAGGGATAAATTTCCTGGAGCTAATGATTTTGGAAGTGAAG
TTATCCCTGGTGCAACTTCCATTGGGATGAGAGTGCAAGCATATTTATAT
GATGGCTACTGGGAAGACATTGGAACAATTGAGGCTTTCTACAATGCGAA
TCTGGGGATCACCAAAAAGCCAATTCCGGATTTCAGCTTCTATGACCGTT
CTGCTCCAATCTATACACAGCCTAGATATCTACCTCCTTCTAAGATGCTT
GATGCTGATGTCACTGATAGTGTAATTGGGTGAAGGCTGTGTGATTAAGA
ATTGCAAAATTCACCATTCTGTTGTTGGGCTTCGATCTTGCATATCAGAA
GGTGCAATTATCGAAGATACTTTACTTATGGGGAGCAGATTATTATGAGA
CGGATGCGGACAGGAGGTTTTTGGGCTGCAAGGGTATTGTTCCATTTGGT
ATTGGCAGAATTCTCACATCAAGAGAGCCATAATCCACANNATGCTCGAA
TGGGGGATTATGTGAAAATTCTTCACAGTGACAGTGTGCAAAAACCACCA
GGGAAACAGATGGATACTCATCAAAACCGGGATTGTTCCATAATCAGGAT
G
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