EY728837

Overview
NameEY728837
Unique NameEY728837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_GEMAT (Glucose-1-phosphate adenylyltransferase OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=glgC PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 5.299e-16
Identity = 55/186 (29.57%), Postives = 86/186 (46.24%), Query Frame = 2
Query:   41 IIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPY--IASMGIYVISKDVMLNLLRDKFP---GANDFGSEVIPGATSIGMRVQAYLYD-----------GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML 550
            ++Q H   +AD+TV  L + ++ A+ FG+M +D   RII F EKP                 D       P+  +ASMGIYV     +  LLR        ++DFG ++IP     G  + A+ +             YW D+GTI+A++ AN+ +T    P    +D+  PI+T      P+K +
Sbjct:  145 MLQQHVNQNADVTVGVLEVPQREASGFGVMHVDANDRIITFLEKPD----------------DPPGIPGAPHLSLASMGIYVFRTTYLFELLRADAADPHSSHDFGKDIIPTVVRHGKAI-AHRFSTSCVRSQDESLAYWRDVGTIDAYWEANIDLT-TVTPQLDLFDKDWPIWTYSELTAPAKFV 312          

HSP 2 Score: 23.0978 bits (48), Expect = 5.299e-16
Identity = 7/13 (53.85%), Postives = 11/13 (84.62%), Query Frame = 3
Query:   12 DHLYRMDYERLFR 50
            DH+Y+MDYE + +
Sbjct:  135 DHVYKMDYELMLQ 147          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_CORDI (Glucose-1-phosphate adenylyltransferase OS=Corynebacterium diphtheriae GN=glgC PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.822e-16
Identity = 56/196 (28.57%), Postives = 91/196 (46.43%), Query Frame = 2
Query:   38 EIIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRD---KFPGANDFGSEVIPGATSIGMRVQAYLYD--------------GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPR-YLPPSKMLDADVTDS 571
            +++  H  +   +TVA + +    A+AFG ++ DE   I EF EKP               G  D+ +      ASMG YV S D ++  L++        +D G ++IP   S+G   QA +YD               YW D+GT++AFY A++ +     P F+ Y++  PI +  R  LPP+K +   +  +
Sbjct:  158 QMVADHIASGKAVTVAGIRVPRSEASAFGCIQADENNNITEFLEKPADPP-----------GTPDDPSMT---FASMGNYVFSTDALIQALKEDENNPDSEHDMGGDIIPYFVSMG---QANVYDFNKNVVPGSTDRDRAYWRDVGTVDAFYEAHMDLISVH-PVFNLYNQQWPIRSTERGDLPPAKFVQGGIAQA 335          

HSP 2 Score: 26.5646 bits (57), Expect = 6.822e-16
Identity = 11/40 (27.50%), Postives = 24/40 (60.00%), Query Frame = 3
Query:  576 LGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLM-GSRL 692
            + +G ++    + +SVV     + EGA +E +++M G+R+
Sbjct:  338 VAQGSIVSGSTVRNSVVSTDVVVEEGATVEGSVIMPGARI 377          

HSP 3 Score: 21.1718 bits (43), Expect = 6.822e-16
Identity = 7/11 (63.64%), Postives = 10/11 (90.91%), Query Frame = 3
Query:   12 DHLYRMDYERL 44
            DH+YRMD E++
Sbjct:  149 DHVYRMDPEQM 159          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_SHEB5 (Glucose-1-phosphate adenylyltransferase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=glgC PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.836e-16
Identity = 58/189 (30.69%), Postives = 93/189 (49.21%), Query Frame = 2
Query:   41 IIQAHRETDADITVAALPMD-EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMP-----YIASMGIYVISKDVMLNLLRD---KFPGANDFGSEVIPGATSIGMRVQAYLY-------DGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDAD 559
            ++ AH E+ AD+TV+ L +   + A +FG+M++DEE RI+ F EKP                   ++ K  P      +ASMG Y+ + + + + L+          DFG ++IP A      V AY +         YW D+GT+++F+ AN+ +   P P  + YD   PI+T    LPP+K +  D
Sbjct:  145 LLAAHAESGADMTVSCLEVPIAEAAGSFGVMEVDEEMRILGFEEKP-------------------QQPKHSPGNPEMCLASMGNYLFNTEFLFDQLKKDALNESSDRDFGKDIIP-AIIEKHNVFAYPFKSAFPNEQAYWRDVGTLDSFWQANMELL-SPTPALNLYDAKWPIWTFQEQLPPAKFVFDD 312          

HSP 2 Score: 22.3274 bits (46), Expect = 8.836e-16
Identity = 8/11 (72.73%), Postives = 9/11 (81.82%), Query Frame = 3
Query:   12 DHLYRMDYERL 44
            DH+YRMDY  L
Sbjct:  135 DHVYRMDYAGL 145          

HSP 3 Score: 21.1718 bits (43), Expect = 8.836e-16
Identity = 7/32 (21.88%), Postives = 18/32 (56.25%), Query Frame = 3
Query:  585 GCVIKNCKIHHSVVGLRSCISEGAIIEDTLLM 680
            GC+I    +  SV+     +   +++ED++++
Sbjct:  327 GCIISGATVRRSVLFNEVRVCSYSLVEDSVVL 358          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_CLOB8 (Glucose-1-phosphate adenylyltransferase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=glgC PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.969e-15
Identity = 50/165 (30.30%), Postives = 82/165 (49.70%), Query Frame = 2
Query:   38 EIIQAHRETDADITVAAL--PMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYT 517
            +++  H+E  A+ T+A +  PMDE  A+ FG+M   E+  I EF EKPK  +                       +ASMGIY+ +   +   LR+        NDFG  +IP     G ++ AY + GYW+D+GTI++ + AN+ + ++   +   +D    IY+
Sbjct:  137 KMLDFHKEKQAEATIAVIEVPMDE--ASRFGIMNTREDLSIYEFEEKPKNPKNN---------------------LASMGIYIFNWKTLKKYLREDESDKTSKNDFGMNIIPSMLGNGNKMVAYPFKGYWKDVGTIDSLWEANMDLIRED-NELDLHDEEWKIYS 277          

HSP 2 Score: 23.483 bits (49), Expect = 1.969e-15
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 3
Query:   12 DHLYRMDYERLFR-HTEK 62
            DH+Y+MDY ++   H EK
Sbjct:  128 DHIYKMDYTKMLDFHKEK 145          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_CORA7 (Glucose-1-phosphate adenylyltransferase OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=glgC PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.555e-15
Identity = 62/196 (31.63%), Postives = 94/196 (47.96%), Query Frame = 2
Query:   38 EIIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLN-LLRDK--FPGANDFGSEVIPGATSIGMRVQAYLYD--------------GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIY-TQPRYLPPSKMLDADVTDS 571
            ++++ H  T  D +VA + +    A+AFG ++ D  G I EF EKP+                DD     M Y ASMG YV +   +++ LL D+     A+D G  +IP       R QA++YD              GYW D+GTI++FY A++ +     P F+ Y+RS PI+ T     PP+K +   +  S
Sbjct:  136 QMVEEHIATGLDCSVAGIRVPRSEASAFGCIQADGMGTITEFVEKPENPPATP----------DD---PNMTY-ASMGNYVFTTQALIDALLEDEKNEDSAHDMGGNIIPYFVE---REQAHVYDFMANEVPGSTERDHGYWRDVGTIDSFYEAHMDMISVH-PIFNLYNRSWPIHSTDDSNFPPAKFVQNGIAQS 313          

HSP 2 Score: 23.483 bits (49), Expect = 2.555e-15
Identity = 7/32 (21.88%), Postives = 20/32 (62.50%), Query Frame = 3
Query:  585 GCVIKNCKIHHSVVGLRSCISEGAIIEDTLLM 680
            GC++    + +SV+     +++GA +E ++++
Sbjct:  319 GCIVSGGTVRNSVLASDVHVADGATVEGSVIL 350          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_BACC1 (Glucose-1-phosphate adenylyltransferase OS=Bacillus cereus (strain ATCC 10987) GN=glgC PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.842e-15
Identity = 50/184 (27.17%), Postives = 94/184 (51.09%), Query Frame = 2
Query:   38 EIIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKF---PGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLD-ADVTDSVI 577
            +++  H E +AD++++ + +    A+ FG+M  +EE  I+EF EKP+  +                       +ASMGIY+ +  ++   L         +NDFG +V+P     G ++ AY ++GYW+D+GT+++ + AN+ + +      +  DR+  IY+     PP  + + A V +S+I
Sbjct:  138 KMLDYHIEKEADVSISVIEVPWDEASRFGIMNTNEEMEIVEFEEKPQFPRSN---------------------LASMGIYIFNWAILKEYLEMDARNPESSNDFGKDVLPLLLDEGKKLMAYPFEGYWKDVGTVKSLWEANMDLLRDE-TSLNLNDRNWRIYSVNPNEPPQYIAEKAKVEESLI 299          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_MANSM (Glucose-1-phosphate adenylyltransferase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=glgC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.144e-15
Identity = 52/182 (28.57%), Postives = 91/182 (50.00%), Query Frame = 2
Query:   38 EIIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLL-RDKFPG-ANDFGSEVIPGATSIGMRVQAYLYDG-----------YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSK 544
            +++  H  + A  TV  + +  + A  FG+M ++E  ++  F EKP+       K ++++              ASMGIYV + D +   L R K P  ++DFG +V+P A + G+ + A+ +D            YW+D+GT+++F+ AN+ +  +  P    YD++ PI   P    PSK
Sbjct:  150 QMLLDHVSSGAKCTVGCIEVPREEAKEFGVMAVNETLKVKAFVEKPQDPPAMIGKPNSSL--------------ASMGIYVFNADYLYEALDRIKTPNTSHDFGKDVMPLALNDGV-LYAHPFDRSCKGRNTEGAIYWKDVGTLDSFWQANIDLVSEE-PQLDIYDQTWPIRGNPVQAYPSK 315          

HSP 2 Score: 26.5646 bits (57), Expect = 4.144e-15
Identity = 10/32 (31.25%), Postives = 21/32 (65.62%), Query Frame = 3
Query:  585 GCVIKNCKIHHSVVGLRSCISEGAIIEDTLLM 680
            GC++KN  I +SV+     ++ G+ IE ++++
Sbjct:  334 GCMVKNASISYSVLFDNVSVNAGSSIEQSVIL 365          

HSP 3 Score: 22.3274 bits (46), Expect = 4.144e-15
Identity = 6/11 (54.55%), Postives = 10/11 (90.91%), Query Frame = 3
Query:   12 DHLYRMDYERL 44
            DH+Y+MDY ++
Sbjct:  141 DHIYKMDYSQM 151          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_FUSNN (Glucose-1-phosphate adenylyltransferase OS=Fusobacterium nucleatum subsp. nucleatum GN=glgC PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.321e-15
Identity = 49/171 (28.65%), Postives = 86/171 (50.29%), Query Frame = 2
Query:   38 EIIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRD--KFPGA-NDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPS 541
            +++Q H + DAD T+    +    A +FG+M   ++  I EF EKPK  +                       +ASMGIY+ +  ++   L +  K P + NDFG  +IP   + G ++ AY + GYW D+GTI++F++A++ +  +   +   +D+S  + T+     PS
Sbjct:  140 KMLQFHIQKDADATIGVFKVPLVDAPSFGIMNTKDDMSIYEFEEKPKEPKSD---------------------LASMGIYIFNWKLLKKYLDEDEKDPNSSNDFGKNIIPNMLNDGKKMFAYPFKGYWRDVGTIQSFWDAHMDLLSED-NELDLFDKSWRVNTRQGIYTPS 288          

HSP 2 Score: 22.7126 bits (47), Expect = 4.321e-15
Identity = 7/18 (38.89%), Postives = 15/18 (83.33%), Query Frame = 3
Query:   12 DHLYRMDYERLFR-HTEK 62
            DH+Y+M+Y+++ + H +K
Sbjct:  131 DHIYKMNYDKMLQFHIQK 148          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_BACWK (Glucose-1-phosphate adenylyltransferase OS=Bacillus weihenstephanensis (strain KBAB4) GN=glgC PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.017e-15
Identity = 49/184 (26.63%), Postives = 94/184 (51.09%), Query Frame = 2
Query:   38 EIIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKF---PGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLD-ADVTDSVI 577
            +++  H E +AD++++ + +    A+ FG+M  +EE  ++EF EKP+  +                       +ASMGIY+ +  ++   L         +NDFG +V+P     G ++ AY ++GYW+D+GT+++ + AN+ + +      +  DR+  IY+     PP  + + A V +S+I
Sbjct:  138 KMLDYHIEKEADVSISVIEVPWDEASRFGIMNTNEEMEVVEFEEKPQFPRSN---------------------LASMGIYIFNWAILKEYLEMDARNPESSNDFGKDVLPLLLDEGKKLMAYPFEGYWKDVGTVKSLWEANMDLLRDE-TSLNLNDRNWRIYSVNPNEPPQYIAEKAKVEESLI 299          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_BACHK (Glucose-1-phosphate adenylyltransferase OS=Bacillus thuringiensis subsp. konkukian GN=glgC PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.017e-15
Identity = 50/184 (27.17%), Postives = 93/184 (50.54%), Query Frame = 2
Query:   38 EIIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKF---PGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLD-ADVTDSVI 577
            +++  H E +AD++++ + +    A+ FG+M  +EE  I+EF EKP+  +                       +ASMGIY+ +  ++   L         +NDFG +V+P     G ++ AY ++GYW+D+GT+++ + AN+ + +      +  DR   IY+     PP  + + A V +S+I
Sbjct:  138 KMLDYHIEKEADVSISVIEVPWDEASRFGIMNTNEEMEIVEFEEKPQFPRSN---------------------LASMGIYIFNWAILKEYLEMDARNPESSNDFGKDVLPLLLDEGKKLMAYPFEGYWKDVGTVKSLWEANMDLLRDE-TSLNLNDRDWRIYSVNPNEPPQYIAEKAKVEESLI 299          
The following BLAST results are available for this feature:
BLAST of EY728837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 310
Match NameE-valueIdentityDescription
GLGC_GEMAT5.299e-1629.57Glucose-1-phosphate adenylyltransferase OS=Gemmati... [more]
GLGC_CORDI6.822e-1628.57Glucose-1-phosphate adenylyltransferase OS=Coryneb... [more]
GLGC_SHEB58.836e-1630.69Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_CLOB81.969e-1530.30Glucose-1-phosphate adenylyltransferase OS=Clostri... [more]
GLGC_CORA72.555e-1531.63Glucose-1-phosphate adenylyltransferase OS=Coryneb... [more]
GLGC_BACC13.842e-1527.17Glucose-1-phosphate adenylyltransferase OS=Bacillu... [more]
GLGC_MANSM4.144e-1528.57Glucose-1-phosphate adenylyltransferase OS=Mannhei... [more]
GLGC_FUSNN4.321e-1528.65Glucose-1-phosphate adenylyltransferase OS=Fusobac... [more]
GLGC_BACWK5.017e-1526.63Glucose-1-phosphate adenylyltransferase OS=Bacillu... [more]
GLGC_BACHK5.017e-1527.17Glucose-1-phosphate adenylyltransferase OS=Bacillu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-009-C05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728837 ID=EY728837; Name=EY728837; organism=Citrus sinensis; type=EST; length=901bp
CCACGCGTCCGGATCATTTGTACCGAATGGACTATGAGAGATTATTCAGG
CACACAGAGAAACTGATGCGGATATCACAGTAGCTGCGCTGCCAATGGAT
GAAAAACGGGCTACTGCTTTTGGTCTGATGAAGATCGATGAAGAGGGACG
CATAATTGAATTTTCTGAGAAACCAAAAGGAGAGCAACTTAAAGCTATGA
AGGTTGATACCACCATATTAGGTCTTGATGATGAGAGAGCTAAAGAGATG
CCTTACATAGCAAGTATGGGTATTTATGTCATCAGCAAAGATGTGATGTT
AAATCTGCTAAGGGATAAATTTCCTGGAGCTAATGATTTTGGAAGTGAAG
TTATCCCTGGTGCAACTTCCATTGGGATGAGAGTGCAAGCATATTTATAT
GATGGCTACTGGGAAGACATTGGAACAATTGAGGCTTTCTACAATGCGAA
TCTGGGGATCACCAAAAAGCCAATTCCGGATTTCAGCTTCTATGACCGTT
CTGCTCCAATCTATACACAGCCTAGATATCTACCTCCTTCTAAGATGCTT
GATGCTGATGTCACTGATAGTGTAATTGGGTGAAGGCTGTGTGATTAAGA
ATTGCAAAATTCACCATTCTGTTGTTGGGCTTCGATCTTGCATATCAGAA
GGTGCAATTATCGAAGATACTTTACTTATGGGGAGCAGATTATTATGAGA
CGGATGCGGACAGGAGGTTTTTGGGCTGCAAGGGTATTGTTCCATTTGGT
ATTGGCAGAATTCTCACATCAAGAGAGCCATAATCCACANNATGCTCGAA
TGGGGGATTATGTGAAAATTCTTCACAGTGACAGTGTGCAAAAACCACCA
GGGAAACAGATGGATACTCATCAAAACCGGGATTGTTCCATAATCAGGAT
G
back to top