EY728837

Overview
NameEY728837
Unique NameEY728837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_CORGB (Glucose-1-phosphate adenylyltransferase OS=Corynebacterium glutamicum (strain R) GN=glgC PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.118e-14
Identity = 58/196 (29.59%), Postives = 94/196 (47.96%), Query Frame = 2
Query:   38 EIIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN---DFGSEVIPGATSIGMRVQAYLYD--------------GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPR-YLPPSKMLDADVTDS 571
            +++  H  +   ++VA + +  + ATAFG ++ D++G I EF EKP               G  D+   +M Y ASMG Y+ + + ++  L+D     N   D G ++IP   S   R  A++YD              GYW D+GTI+AFY  ++ +     P F+ Y+   PI+T     LPP+K +   +  S
Sbjct:  140 QMLDEHIASGRAVSVAGIRVPREEATAFGCIQSDDDGNITEFLEKPADPP-----------GTPDD--PDMTY-ASMGNYIFTTEALIQALKDDENNENSDHDMGGDIIPYFVS---RNDAHVYDFSGNIVPGATERDKGYWRDVGTIDAFYECHMDLISVH-PIFNLYNSEWPIHTTSEGNLPPAKFVRGGIAQS 317          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_BIFAA (Glucose-1-phosphate adenylyltransferase OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=glgC PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.164e-14
Identity = 61/210 (29.05%), Postives = 94/210 (44.76%), Query Frame = 2
Query:   38 EIIQAHRETDADITVAALPMDEKRATAFGLMKIDEE--GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR--------------DKFP--------GANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDA------DVTDSVI 577
            +++Q H E+ A+ TVA +     ++  FG++++D +    I  F EKP+           T  GL D+       +ASMG YV + D +   L               D  P        G  DF S  IPGAT             YW D+GT++ FY+A++ +    +P+F+ Y+   PIYT    LPP+K + A        TDS++
Sbjct:  136 QMVQQHIESGAEFTVAGIRQPISQSNQFGVIEVDPDHPNMIKSFQEKPQ-----------TTTGLPDDPNS---ILASMGNYVANTDALFAALSLDEKAEDTKHDMGGDIAPYFAARNEAGVYDFNSNEIPGATPTD--------HAYWRDVGTLKQFYDAHMDLISY-VPEFNLYNTEWPIYTLSGNLPPAKFVHAGRDRLGHATDSIV 322          

HSP 2 Score: 22.3274 bits (46), Expect = 1.164e-14
Identity = 6/11 (54.55%), Postives = 11/11 (100.00%), Query Frame = 3
Query:   12 DHLYRMDYERL 44
            DH+YRMD++++
Sbjct:  127 DHVYRMDFQQM 137          

HSP 3 Score: 20.7866 bits (42), Expect = 1.164e-14
Identity = 8/31 (25.81%), Postives = 17/31 (54.84%), Query Frame = 3
Query:  585 GCVIKNCKIHHSVVGLRSCISEGAIIEDTLL 677
            G ++   ++HHSV+     I   + + D++L
Sbjct:  325 GVIVSGGEVHHSVLSPNVRIHSWSQVVDSIL 355          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_CLOK5 (Glucose-1-phosphate adenylyltransferase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=glgC PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.601e-14
Identity = 44/147 (29.93%), Postives = 77/147 (52.38%), Query Frame = 2
Query:   41 IIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR----DKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKK 469
            +++ H+E  AD+T+A + +  +    FG++    +  I EF EKP       MK  +T               ASMG+Y+    ++   L+    DK   +NDFG  +IP   + G+++ AY + GYW+D+GTI++ + AN+ + K+
Sbjct:  138 MLKFHKEKKADVTIAVIEVPIEETYRFGIVNTKSDMEIYEFQEKP-------MKAKSTK--------------ASMGVYIFKWTLLKRFLKADQSDK-NSSNDFGKNIIPNMLNSGIKMYAYPFRGYWKDVGTIQSLWEANMDLLKE 262          

HSP 2 Score: 22.3274 bits (46), Expect = 1.601e-14
Identity = 8/18 (44.44%), Postives = 13/18 (72.22%), Query Frame = 3
Query:   12 DHLYRMDYERLFR-HTEK 62
            DH+Y+M+Y  + + H EK
Sbjct:  128 DHIYKMNYANMLKFHKEK 145          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_RHOFD (Glucose-1-phosphate adenylyltransferase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=glgC PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.907e-14
Identity = 55/187 (29.41%), Postives = 85/187 (45.45%), Query Frame = 2
Query:   41 IIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGA---NDFGSEVIPGATSIGMRVQAYLYD-----------GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDAD 559
            +I+ H    A  TVA + +    A+AFG+M +D    I  F EKP   Q    + +  ++              SMG+YV   D +   L+     A   +DFG ++IP   S G    A+ +D            YW D+GT++A++ AN+ +T   IP    YD+  PI+T     PP+K +  D
Sbjct:  145 LIEDHVALGAPCTVACIEVPLAEASAFGVMTVDAMRHITRFDEKPAHPQPMLDQPEQALV--------------SMGVYVFDADYLFAALQTDIEDAASHHDFGKDLIPAIVSRG-EAMAHPFDLSCVKSSPESPSYWRDVGTVDAYWAANIDLT-ATIPQLDLYDKDWPIWTYQPTSPPAKFVFDD 315          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_METCA (Glucose-1-phosphate adenylyltransferase OS=Methylococcus capsulatus GN=glgC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.946e-14
Identity = 56/179 (31.28%), Postives = 88/179 (49.16%), Query Frame = 2
Query:   53 HRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVML-NLLRD-KFPGAN-DFGSEVIPGATSIGMRVQAYLY-------DGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDAD 559
            H E  AD+T+  + +    A AFG+M++D E RI +F EKP        + D                 ASMGIY+ +   +   L++D   PG+N DFG ++IP       RV AY +         YW D+GT+++++ AN+ +     P+ + YD+  PI+T     PP+K +  D
Sbjct:  154 HVERKADLTIGCMEVPLADAKAFGVMQMDGEQRIRKFVEKPSDPPPMPNRPDHA--------------AASMGIYIFNTAFLFEQLIKDADTPGSNHDFGMDIIPQVIQ-KYRVFAYRFRNAQSGVQAYWRDVGTVDSYWAANMELIGVD-PELNLYDQEWPIWTYQAQTPPAKFVFDD 316          

HSP 2 Score: 20.7866 bits (42), Expect = 1.946e-14
Identity = 6/8 (75.00%), Postives = 8/8 (100.00%), Query Frame = 3
Query:   12 DHLYRMDY 35
            DH+Y+MDY
Sbjct:  140 DHVYKMDY 147          

HSP 3 Score: 20.4014 bits (41), Expect = 1.946e-14
Identity = 6/32 (18.75%), Postives = 19/32 (59.38%), Query Frame = 3
Query:  585 GCVIKNCKIHHSVVGLRSCISEGAIIEDTLLM 680
            GC+I   ++ HS++     ++  + + D++++
Sbjct:  331 GCIISGAEVRHSLLFSNVRVNSFSRVLDSVIL 362          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_MYCLE (Glucose-1-phosphate adenylyltransferase OS=Mycobacterium leprae GN=glgC PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.076e-14
Identity = 59/199 (29.65%), Postives = 97/199 (48.74%), Query Frame = 2
Query:   38 EIIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR---DKFPGANDFGSEVIPGATSIGMRVQAYLYD--------------GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLD-ADVTDSVIG 580
            ++++ H  + A  TVA + +    ATAFG +  D+ GRI  F+EKP    LK         G  D+  K      SMG Y+ +  V+++ +R   D     +D G +++P     GM   A +YD               YW D+GT++AFY+A++ +     P F+ Y++  PI  +   L P+K ++   V +SV+G
Sbjct:  136 QMLRFHIGSGAGATVAGIRVPRSDATAFGCIDADDSGRIRRFTEKP----LKPP-------GTPDDPDKT---FVSMGNYIFTTKVLVDAIRADADDDHSYHDMGGDILPRLVDGGM---AAVYDFSQNEVPGATDWDRAYWRDVGTLDAFYDAHMDLVSLR-PVFNLYNKRWPIRGESENLAPAKFVNGGSVQESVVG 316          

HSP 2 Score: 23.0978 bits (48), Expect = 2.076e-14
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 3
Query:   12 DHLYRMDYERLFR 50
            DH+YRMD E++ R
Sbjct:  127 DHVYRMDPEQMLR 139          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_MYCLB (Glucose-1-phosphate adenylyltransferase OS=Mycobacterium leprae (strain Br4923) GN=glgC PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.076e-14
Identity = 59/199 (29.65%), Postives = 97/199 (48.74%), Query Frame = 2
Query:   38 EIIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR---DKFPGANDFGSEVIPGATSIGMRVQAYLYD--------------GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLD-ADVTDSVIG 580
            ++++ H  + A  TVA + +    ATAFG +  D+ GRI  F+EKP    LK         G  D+  K      SMG Y+ +  V+++ +R   D     +D G +++P     GM   A +YD               YW D+GT++AFY+A++ +     P F+ Y++  PI  +   L P+K ++   V +SV+G
Sbjct:  136 QMLRFHIGSGAGATVAGIRVPRSDATAFGCIDADDSGRIRRFTEKP----LKPP-------GTPDDPDKT---FVSMGNYIFTTKVLVDAIRADADDDHSYHDMGGDILPRLVDGGM---AAVYDFSQNEVPGATDWDRAYWRDVGTLDAFYDAHMDLVSLR-PVFNLYNKRWPIRGESENLAPAKFVNGGSVQESVVG 316          

HSP 2 Score: 23.0978 bits (48), Expect = 2.076e-14
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 3
Query:   12 DHLYRMDYERLFR 50
            DH+YRMD E++ R
Sbjct:  127 DHVYRMDPEQMLR 139          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_ARTS2 (Glucose-1-phosphate adenylyltransferase OS=Arthrobacter sp. (strain FB24) GN=glgC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.688e-14
Identity = 54/190 (28.42%), Postives = 93/190 (48.95%), Query Frame = 2
Query:   38 EIIQAHRETDADITVAALPMDEKRATAFGLMKIDEEG--RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR---DKFPGANDFGSEVIPGATSIGMRVQAYLYD--------------GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML 550
            ++++ H  + A  TVAA+      A  FG++++D+E   +I  F EKP       +  D T             ++ASMG YV   D +++ L    ++    +D G ++IP   + G   +A +YD               YW D+GTI++FY+A++ +   P+P F+ Y+   PIYT+    PP+K +
Sbjct:  136 QMVEQHVASGAKATVAAVRQPLNMADQFGVIEVDQENPQKIAAFVEKPSSTP--GLAADPT------------QFLASMGNYVFDADALVDALHVDAERLDTKHDMGGDIIPYFVNKG---EAGVYDFTLNDIPGSTERDRTYWRDVGTIDSFYDAHMDLI-SPMPVFNLYNSEWPIYTRQSISPPAKFV 307          

HSP 2 Score: 21.1718 bits (43), Expect = 2.688e-14
Identity = 6/11 (54.55%), Postives = 10/11 (90.91%), Query Frame = 3
Query:   12 DHLYRMDYERL 44
            DH+YRMD+ ++
Sbjct:  127 DHVYRMDFAQM 137          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_CORGL (Glucose-1-phosphate adenylyltransferase OS=Corynebacterium glutamicum GN=glgC PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.252e-14
Identity = 58/196 (29.59%), Postives = 93/196 (47.45%), Query Frame = 2
Query:   38 EIIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN---DFGSEVIPGATSIGMRVQAYLYD--------------GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPR-YLPPSKMLDADVTDS 571
            +++  H  +   ++VA + +  + ATAFG ++ D +G I EF EKP               G  D+   +M Y ASMG Y+ + + ++  L+D     N   D G ++IP   S   R  A++YD              GYW D+GTI+AFY  ++ +     P F+ Y+   PI+T     LPP+K +   +  S
Sbjct:  136 QMLDEHIASGRAVSVAGIRVPREEATAFGCIQSDVDGNITEFLEKPADPP-----------GTPDD--PDMTY-ASMGNYIFTTEALIQALKDDENNENSDHDMGGDIIPYFVS---RNDAHVYDFSGNIVPGATERDKGYWRDVGTIDAFYECHMDLISVH-PIFNLYNSEWPIHTTSEGNLPPAKFVRGGIAQS 313          
BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_RHORU (Glucose-1-phosphate adenylyltransferase OS=Rhodospirillum rubrum GN=glgC PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.501e-14
Identity = 50/184 (27.17%), Postives = 84/184 (45.65%), Query Frame = 2
Query:   38 EIIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRD---KFPGANDFGSEVIPGATSIGMRV-----QAYLY-----DGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML 550
            +++  H    +D TVA + +  + AT +G +++D +  I+ F EKP             I G  D         ASMGIY+ + D +  +L          +DFG ++IP        V     Q+ +Y     + YW D+GT++A+++AN+ +     P    YD   PI+T     PP+K +
Sbjct:  149 KLLAHHIARGSDCTVACVDVPREEATGYGCVEVDNDDNIVHFLEKPAN--------PPGIPGRPDRA------FASMGIYIFNADFLYEILESDALNEASQHDFGRDIIPSQVGKARIVAHRFSQSCVYSVGRREPYWRDVGTVDAYWSANIDLV-SVTPALDLYDADWPIWTYQMQRPPAKFV 317          

HSP 2 Score: 24.2534 bits (51), Expect = 3.501e-14
Identity = 7/14 (50.00%), Postives = 10/14 (71.43%), Query Frame = 3
Query:   12 DHLYRMDYERLFRH 53
            DH+Y+ DY +L  H
Sbjct:  140 DHIYKQDYSKLLAH 153          
The following BLAST results are available for this feature:
BLAST of EY728837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 310
Match NameE-valueIdentityDescription
GLGC_CORGB1.118e-1429.59Glucose-1-phosphate adenylyltransferase OS=Coryneb... [more]
GLGC_BIFAA1.164e-1429.05Glucose-1-phosphate adenylyltransferase OS=Bifidob... [more]
GLGC_CLOK51.601e-1429.93Glucose-1-phosphate adenylyltransferase OS=Clostri... [more]
GLGC_RHOFD1.907e-1429.41Glucose-1-phosphate adenylyltransferase OS=Rhodofe... [more]
GLGC_METCA1.946e-1431.28Glucose-1-phosphate adenylyltransferase OS=Methylo... [more]
GLGC_MYCLE2.076e-1429.65Glucose-1-phosphate adenylyltransferase OS=Mycobac... [more]
GLGC_MYCLB2.076e-1429.65Glucose-1-phosphate adenylyltransferase OS=Mycobac... [more]
GLGC_ARTS22.688e-1428.42Glucose-1-phosphate adenylyltransferase OS=Arthrob... [more]
GLGC_CORGL3.252e-1429.59Glucose-1-phosphate adenylyltransferase OS=Coryneb... [more]
GLGC_RHORU3.501e-1427.17Glucose-1-phosphate adenylyltransferase OS=Rhodosp... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-009-C05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728837 ID=EY728837; Name=EY728837; organism=Citrus sinensis; type=EST; length=901bp
CCACGCGTCCGGATCATTTGTACCGAATGGACTATGAGAGATTATTCAGG
CACACAGAGAAACTGATGCGGATATCACAGTAGCTGCGCTGCCAATGGAT
GAAAAACGGGCTACTGCTTTTGGTCTGATGAAGATCGATGAAGAGGGACG
CATAATTGAATTTTCTGAGAAACCAAAAGGAGAGCAACTTAAAGCTATGA
AGGTTGATACCACCATATTAGGTCTTGATGATGAGAGAGCTAAAGAGATG
CCTTACATAGCAAGTATGGGTATTTATGTCATCAGCAAAGATGTGATGTT
AAATCTGCTAAGGGATAAATTTCCTGGAGCTAATGATTTTGGAAGTGAAG
TTATCCCTGGTGCAACTTCCATTGGGATGAGAGTGCAAGCATATTTATAT
GATGGCTACTGGGAAGACATTGGAACAATTGAGGCTTTCTACAATGCGAA
TCTGGGGATCACCAAAAAGCCAATTCCGGATTTCAGCTTCTATGACCGTT
CTGCTCCAATCTATACACAGCCTAGATATCTACCTCCTTCTAAGATGCTT
GATGCTGATGTCACTGATAGTGTAATTGGGTGAAGGCTGTGTGATTAAGA
ATTGCAAAATTCACCATTCTGTTGTTGGGCTTCGATCTTGCATATCAGAA
GGTGCAATTATCGAAGATACTTTACTTATGGGGAGCAGATTATTATGAGA
CGGATGCGGACAGGAGGTTTTTGGGCTGCAAGGGTATTGTTCCATTTGGT
ATTGGCAGAATTCTCACATCAAGAGAGCCATAATCCACANNATGCTCGAA
TGGGGGATTATGTGAAAATTCTTCACAGTGACAGTGTGCAAAAACCACCA
GGGAAACAGATGGATACTCATCAAAACCGGGATTGTTCCATAATCAGGAT
G
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