EY728837 | Citrus Genome Database

Overview


Name	EY728837
Unique Name	EY728837
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	901

Libraries


Library Name	Type
Sweet orange fruit, development stadium (5 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_ECO8A (Glucose-1-phosphate adenylyltransferase OS=Escherichia coli O8 (strain IAI1) GN=glgC PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.118e-20
Identity = 63/182 (34.62%), Postives = 92/182 (50.55%), Query Frame = 2

Query:   53 HRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN---DFGSEVIPGATSIGMRVQAYLY-------------DGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML 550
            H E  A  TVA +P+  + A+AFG+M +DE  +IIEF EKP                + ++ +K    +ASMGIYV   D +  LL +     N   DFG ++IP  T  G+   AY +             + YW D+GT+EA++ ANL +    +P+   YDR+ PI T    LPP+K +
Sbjct:  156 HVEKGARCTVACMPVPIEEASAFGVMAVDENDKIIEFVEKPANPP-----------SMPNDPSKS---LASMGIYVFDADYLYELLEEDDRDENSSHDFGKDLIPKITEAGL---AYAHPFPLSCVQSDPDAEPYWRDVGTLEAYWKANLDLA-SVVPELDMYDRNWPIRTYNESLPPAKFV 319

HSP 2 Score: 24.2534 bits (51), Expect = 1.118e-20
Identity = 10/18 (55.56%), Postives = 12/18 (66.67%), Query Frame = 3

Query:   12 DHLYRMDYER-LFRHTEK 62
            DH+Y+ DY R L  H EK
Sbjct:  142 DHIYKQDYSRMLIDHVEK 159

BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_ECO81 (Glucose-1-phosphate adenylyltransferase OS=Escherichia coli O81 (strain ED1a) GN=glgC PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.118e-20
Identity = 63/182 (34.62%), Postives = 92/182 (50.55%), Query Frame = 2

Query:   53 HRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN---DFGSEVIPGATSIGMRVQAYLY-------------DGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML 550
            H E  A  TVA +P+  + A+AFG+M +DE  +IIEF EKP                + ++ +K    +ASMGIYV   D +  LL +     N   DFG ++IP  T  G+   AY +             + YW D+GT+EA++ ANL +    +P+   YDR+ PI T    LPP+K +
Sbjct:  156 HVEKGARCTVACMPVPIEEASAFGVMAVDENDKIIEFVEKPANPP-----------SMPNDPSKS---LASMGIYVFDADYLYELLEEDDRDENSSHDFGKDLIPKITEAGL---AYAHPFPLSCVQSDPDAEPYWRDVGTLEAYWKANLDLA-SVVPELDMYDRNWPIRTYNESLPPAKFV 319

HSP 2 Score: 24.2534 bits (51), Expect = 1.118e-20
Identity = 10/18 (55.56%), Postives = 12/18 (66.67%), Query Frame = 3

Query:   12 DHLYRMDYER-LFRHTEK 62
            DH+Y+ DY R L  H EK
Sbjct:  142 DHIYKQDYSRMLIDHVEK 159

BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_ECO5E (Glucose-1-phosphate adenylyltransferase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=glgC PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.118e-20
Identity = 63/182 (34.62%), Postives = 92/182 (50.55%), Query Frame = 2

Query:   53 HRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN---DFGSEVIPGATSIGMRVQAYLY-------------DGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML 550
            H E  A  TVA +P+  + A+AFG+M +DE  +IIEF EKP                + ++ +K    +ASMGIYV   D +  LL +     N   DFG ++IP  T  G+   AY +             + YW D+GT+EA++ ANL +    +P+   YDR+ PI T    LPP+K +
Sbjct:  156 HVEKGARCTVACMPVPIEEASAFGVMAVDENDKIIEFVEKPANPP-----------SMPNDPSKS---LASMGIYVFDADYLYELLEEDDRDENSSHDFGKDLIPKITEAGL---AYAHPFPLSCVQSDPDAEPYWRDVGTLEAYWKANLDLA-SVVPELDMYDRNWPIRTYNESLPPAKFV 319

HSP 2 Score: 24.2534 bits (51), Expect = 1.118e-20
Identity = 10/18 (55.56%), Postives = 12/18 (66.67%), Query Frame = 3

Query:   12 DHLYRMDYER-LFRHTEK 62
            DH+Y+ DY R L  H EK
Sbjct:  142 DHIYKQDYSRMLIDHVEK 159

BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_ECO57 (Glucose-1-phosphate adenylyltransferase OS=Escherichia coli O157:H7 GN=glgC PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.118e-20
Identity = 63/182 (34.62%), Postives = 92/182 (50.55%), Query Frame = 2

Query:   53 HRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN---DFGSEVIPGATSIGMRVQAYLY-------------DGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML 550
            H E  A  TVA +P+  + A+AFG+M +DE  +IIEF EKP                + ++ +K    +ASMGIYV   D +  LL +     N   DFG ++IP  T  G+   AY +             + YW D+GT+EA++ ANL +    +P+   YDR+ PI T    LPP+K +
Sbjct:  156 HVEKGARCTVACMPVPIEEASAFGVMAVDENDKIIEFVEKPANPP-----------SMPNDPSKS---LASMGIYVFDADYLYELLEEDDRDENSSHDFGKDLIPKITEAGL---AYAHPFPLSCVQSDPDAEPYWRDVGTLEAYWKANLDLA-SVVPELDMYDRNWPIRTYNESLPPAKFV 319

HSP 2 Score: 24.2534 bits (51), Expect = 1.118e-20
Identity = 10/18 (55.56%), Postives = 12/18 (66.67%), Query Frame = 3

Query:   12 DHLYRMDYER-LFRHTEK 62
            DH+Y+ DY R L  H EK
Sbjct:  142 DHIYKQDYSRMLIDHVEK 159

BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_ECO55 (Glucose-1-phosphate adenylyltransferase OS=Escherichia coli (strain 55989 / EAEC) GN=glgC PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.118e-20
Identity = 63/182 (34.62%), Postives = 92/182 (50.55%), Query Frame = 2

Query:   53 HRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN---DFGSEVIPGATSIGMRVQAYLY-------------DGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML 550
            H E  A  TVA +P+  + A+AFG+M +DE  +IIEF EKP                + ++ +K    +ASMGIYV   D +  LL +     N   DFG ++IP  T  G+   AY +             + YW D+GT+EA++ ANL +    +P+   YDR+ PI T    LPP+K +
Sbjct:  156 HVEKGARCTVACMPVPIEEASAFGVMAVDENDKIIEFVEKPANPP-----------SMPNDPSKS---LASMGIYVFDADYLYELLEEDDRDENSSHDFGKDLIPKITEAGL---AYAHPFPLSCVQSDPDAEPYWRDVGTLEAYWKANLDLA-SVVPELDMYDRNWPIRTYNESLPPAKFV 319

HSP 2 Score: 24.2534 bits (51), Expect = 1.118e-20
Identity = 10/18 (55.56%), Postives = 12/18 (66.67%), Query Frame = 3

Query:   12 DHLYRMDYER-LFRHTEK 62
            DH+Y+ DY R L  H EK
Sbjct:  142 DHIYKQDYSRMLIDHVEK 159

BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_ECO24 (Glucose-1-phosphate adenylyltransferase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=glgC PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.118e-20
Identity = 63/182 (34.62%), Postives = 92/182 (50.55%), Query Frame = 2

Query:   53 HRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN---DFGSEVIPGATSIGMRVQAYLY-------------DGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML 550
            H E  A  TVA +P+  + A+AFG+M +DE  +IIEF EKP                + ++ +K    +ASMGIYV   D +  LL +     N   DFG ++IP  T  G+   AY +             + YW D+GT+EA++ ANL +    +P+   YDR+ PI T    LPP+K +
Sbjct:  156 HVEKGARCTVACMPVPIEEASAFGVMAVDENDKIIEFVEKPANPP-----------SMPNDPSKS---LASMGIYVFDADYLYELLEEDDRDENSSHDFGKDLIPKITEAGL---AYAHPFPLSCVQSDPDAEPYWRDVGTLEAYWKANLDLA-SVVPELDMYDRNWPIRTYNESLPPAKFV 319

HSP 2 Score: 24.2534 bits (51), Expect = 1.118e-20
Identity = 10/18 (55.56%), Postives = 12/18 (66.67%), Query Frame = 3

Query:   12 DHLYRMDYER-LFRHTEK 62
            DH+Y+ DY R L  H EK
Sbjct:  142 DHIYKQDYSRMLIDHVEK 159

BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_ANAD2 (Glucose-1-phosphate adenylyltransferase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=glgC PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.119e-20
Identity = 62/198 (31.31%), Postives = 106/198 (53.54%), Query Frame = 2

Query:   38 EIIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVML-NLLRDKF--PGANDFGSEVIPGATSIGMRVQAYLYD--------------GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIG 580
            ++++ H +  A++TVAA+P+  + A+ FG++++D +GR+I F EKP+           TI G D  R      +ASMG Y+ S D ++  ++RD      A+DFG  ++    S+  R + Y+YD              GYW D+G+I+A++ AN+ +     P FS Y+   PI+T     PP+K +  + +D  +G
Sbjct:  133 QMLEFHLDRKAELTVAAVPIPVQEASEFGIIEVDADGRMIGFVEKPQ-------SAPKTIPG-DPTRC-----LASMGNYLFSTDALVQEIVRDAGDPSSAHDFGKSIV---ASMYQRKRVYVYDFARNVVPGQTERERGYWRDVGSIDAYFQANMDLVAVD-PVFSLYNDEWPIFTVQYNYPPAKFVFNNESDHRVG 313

HSP 2 Score: 28.4906 bits (62), Expect = 1.119e-20
Identity = 8/34 (23.53%), Postives = 22/34 (64.71%), Query Frame = 3

Query:  576 LGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLL 677
            + EGC+I    +HHS++  +  ++  A ++++++
Sbjct:  320 VSEGCIISGSHVHHSILSPKVRVNSYATVDESIV 353

BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC1_VIBPA (Glucose-1-phosphate adenylyltransferase 1 OS=Vibrio parahaemolyticus GN=glgC1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.120e-20
Identity = 60/186 (32.26%), Postives = 95/186 (51.08%), Query Frame = 2

Query:   38 EIIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLL---RDKFPGANDFGSEVIPGATSIG---------MRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDAD 559
            +++  H E  A +TV+AL M  K A+ FG++++D EGR+I F EKP   +        +I G  D        + SMG YV    V+ + L    D    ++DFG ++IP     G          R+     + YW D+GTI+A++ A++ + +K  P FS Y+R  P++T    LPP+   D+D
Sbjct:  133 QMLNFHTEKKASLTVSALRMPLKEASQFGVIEVDAEGRMIGFEEKPANPK--------SIPGEPDFA------LVSMGNYVFEAQVLFSELVEDADNEASSHDFGKDIIPKMFPRGDVFVYDFSTNRISGEKEEVYWRDVGTIDAYWQAHMDLLEKDAP-FSLYNRKWPLHTYYPPLPPATFTDSD 303

HSP 2 Score: 29.6462 bits (65), Expect = 1.120e-20
Identity = 13/41 (31.71%), Postives = 23/41 (56.10%), Query Frame = 3

Query:  585 GCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGSRLL*DGC 707
            G  ++  +I  SV+G RS I+    I + +L+G   + +GC
Sbjct:  317 GSYVRGSRIEKSVLGFRSNIASACDISECILLGDVKIGEGC 357

BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_STRA5 (Glucose-1-phosphate adenylyltransferase OS=Streptococcus agalactiae serotype V GN=glgC PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.122e-20
Identity = 66/184 (35.87%), Postives = 94/184 (51.09%), Query Frame = 2

Query:   38 EIIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGA---NDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML-DADVTDSVI 577
            +++Q H++  A +TVA L +  K A+ FG+M  D   RI+EF EKP  E  K+ K                   ASMGIY+     +  +L D        +DFG  VIP     G RV  Y +DGYW+D+GTIE+ + AN+    +     S  DRS  IY++    PP+ M  DA+V DS++
Sbjct:  136 DMLQTHKDNLASLTVAVLDVPLKEASRFGIMNTDSNDRIVEFEEKP--EHPKSTK-------------------ASMGIYIFDWKRLRTVLIDGEKNGIDMSDFGKNVIPAYLESGERVYTYNFDGYWKDVGTIESLWEANMEYIGEDNKLHS-RDRSWKIYSKNLIAPPNFMTEDANVKDSLV 297

HSP 2 Score: 24.2534 bits (51), Expect = 1.122e-20
Identity = 10/41 (24.39%), Postives = 21/41 (51.22%), Query Frame = 3

Query:  582 EGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGSRLL*DG 704
            +GC +    + HS++     +   AII+D+ +M    + +G
Sbjct:  299 DGCFVAG-NVEHSILSTNVQVKPNAIIKDSFVMSGATIGEG 338

BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_STRA3 (Glucose-1-phosphate adenylyltransferase OS=Streptococcus agalactiae serotype III GN=glgC PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.122e-20
Identity = 66/184 (35.87%), Postives = 94/184 (51.09%), Query Frame = 2

Query:   38 EIIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGA---NDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML-DADVTDSVI 577
            +++Q H++  A +TVA L +  K A+ FG+M  D   RI+EF EKP  E  K+ K                   ASMGIY+     +  +L D        +DFG  VIP     G RV  Y +DGYW+D+GTIE+ + AN+    +     S  DRS  IY++    PP+ M  DA+V DS++
Sbjct:  136 DMLQTHKDNLASLTVAVLDVPLKEASRFGIMNTDSNDRIVEFEEKP--EHPKSTK-------------------ASMGIYIFDWKRLRTVLIDGEKNGIDMSDFGKNVIPAYLESGERVYTYNFDGYWKDVGTIESLWEANMEYIGEDNKLHS-RDRSWKIYSKNLIAPPNFMTEDANVKDSLV 297

HSP 2 Score: 24.2534 bits (51), Expect = 1.122e-20
Identity = 10/41 (24.39%), Postives = 21/41 (51.22%), Query Frame = 3

Query:  582 EGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGSRLL*DG 704
            +GC +    + HS++     +   AII+D+ +M    + +G
Sbjct:  299 DGCFVAG-NVEHSILSTNVQVKPNAIIKDSFVMSGATIGEG 338

The following BLAST results are available for this feature:

BLAST of EY728837 vs. ExPASy Swiss-Prot

BLAST of EY728837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 310


Match Name	E-value	Identity	Description
GLGC_ECO8A	1.118e-20	34.62	Glucose-1-phosphate adenylyltransferase OS=Escheri...	[more]
GLGC_ECO81	1.118e-20	34.62	Glucose-1-phosphate adenylyltransferase OS=Escheri...	[more]
GLGC_ECO5E	1.118e-20	34.62	Glucose-1-phosphate adenylyltransferase OS=Escheri...	[more]
GLGC_ECO57	1.118e-20	34.62	Glucose-1-phosphate adenylyltransferase OS=Escheri...	[more]
GLGC_ECO55	1.118e-20	34.62	Glucose-1-phosphate adenylyltransferase OS=Escheri...	[more]
GLGC_ECO24	1.118e-20	34.62	Glucose-1-phosphate adenylyltransferase OS=Escheri...	[more]
GLGC_ANAD2	1.119e-20	31.31	Glucose-1-phosphate adenylyltransferase OS=Anaerom...	[more]
GLGC1_VIBPA	1.120e-20	32.26	Glucose-1-phosphate adenylyltransferase 1 OS=Vibri...	[more]
GLGC_STRA5	1.122e-20	35.87	Glucose-1-phosphate adenylyltransferase OS=Strepto...	[more]
GLGC_STRA3	1.122e-20	35.87	Glucose-1-phosphate adenylyltransferase OS=Strepto...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-704-009-C05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY728837 ID=EY728837; Name=EY728837; organism=Citrus sinensis; type=EST; length=901bp
CCACGCGTCCGGATCATTTGTACCGAATGGACTATGAGAGATTATTCAGG
CACACAGAGAAACTGATGCGGATATCACAGTAGCTGCGCTGCCAATGGAT
GAAAAACGGGCTACTGCTTTTGGTCTGATGAAGATCGATGAAGAGGGACG
CATAATTGAATTTTCTGAGAAACCAAAAGGAGAGCAACTTAAAGCTATGA
AGGTTGATACCACCATATTAGGTCTTGATGATGAGAGAGCTAAAGAGATG
CCTTACATAGCAAGTATGGGTATTTATGTCATCAGCAAAGATGTGATGTT
AAATCTGCTAAGGGATAAATTTCCTGGAGCTAATGATTTTGGAAGTGAAG
TTATCCCTGGTGCAACTTCCATTGGGATGAGAGTGCAAGCATATTTATAT
GATGGCTACTGGGAAGACATTGGAACAATTGAGGCTTTCTACAATGCGAA
TCTGGGGATCACCAAAAAGCCAATTCCGGATTTCAGCTTCTATGACCGTT
CTGCTCCAATCTATACACAGCCTAGATATCTACCTCCTTCTAAGATGCTT
GATGCTGATGTCACTGATAGTGTAATTGGGTGAAGGCTGTGTGATTAAGA
ATTGCAAAATTCACCATTCTGTTGTTGGGCTTCGATCTTGCATATCAGAA
GGTGCAATTATCGAAGATACTTTACTTATGGGGAGCAGATTATTATGAGA
CGGATGCGGACAGGAGGTTTTTGGGCTGCAAGGGTATTGTTCCATTTGGT
ATTGGCAGAATTCTCACATCAAGAGAGCCATAATCCACANNATGCTCGAA
TGGGGGATTATGTGAAAATTCTTCACAGTGACAGTGTGCAAAAACCACCA
GGGAAACAGATGGATACTCATCAAAACCGGGATTGTTCCATAATCAGGAT
G