EY728832 | Citrus Genome Database

Overview


Name	EY728832
Unique Name	EY728832
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	879

Libraries


Library Name	Type
Sweet orange fruit, development stadium (5 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSI (MADS-box transcription factor 7 OS=Oryza sativa subsp. indica GN=MADS7 PE=2 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.270e-44
Identity = 80/116 (68.97%), Postives = 94/116 (81.03%), Query Frame = 1

Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSYG--TLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQYWG 603
            MGRG+VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEFCS+ SM +TLEKY++CSY        ++ +++ +AS  EY+KLK + E LQ  QR   G
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTQSMTKTLEKYQKCSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLG 116

HSP 2 Score: 45.8246 bits (107), Expect = 1.270e-44
Identity = 23/48 (47.92%), Postives = 35/48 (72.92%), Query Frame = 3

Query:  603 GKIWDA*AXKELEQLERQLGSSLGRVRSLKNRNQLDKLSELQGKEEML 746
            G+  D+   KELE LE+QL SSL  VR+ + ++ +D+L+ELQ KE+M+
Sbjct:  116 GEDLDSLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMV 163

[Close]

BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.655e-44
Identity = 80/123 (65.04%), Postives = 98/123 (79.67%), Query Frame = 1

Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSYGTLQANHQSAKE---TQASYEEYIKLKEKHEALQHLQRQYWGGRFGTL 621
            MGRG+VELKR+ENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALI+FS+RGKLYEFCS+ SM +TLE+Y++C+YG  + N  S +      +S +EY+KLK ++E+LQ  QR   G   G L
Sbjct:    1 MGRGRVELKRVENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSSMLKTLERYQKCNYGAPEGNVTSKEALVLELSSQQEYLKLKARYESLQRSQRNLMGEDLGPL 123

HSP 2 Score: 42.743 bits (99), Expect = 1.655e-44
Identity = 21/39 (53.85%), Postives = 29/39 (74.36%), Query Frame = 3

Query:  630 KELEQLERQLGSSLGRVRSLKNRNQLDKLSELQGKEEML 746
            K+LE LERQL SSL ++RS + +  LD+L +LQ KE +L
Sbjct:  126 KDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLL 164

[Close]

BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: AGL9_SOLLC (Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 6.230e-44
Identity = 82/121 (67.77%), Postives = 98/121 (80.99%), Query Frame = 1

Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSYGTLQANHQSAKETQ-ASYEEYIKLKEKHEALQHLQRQYWGGRFGTL 621
            MGRG+VELKRIE KINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEFCSS SM +TLE+Y++C+YG  + N  + +  + +S +EY+KLK ++EALQ  QR   G   G L
Sbjct:    1 MGRGRVELKRIEGKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNISTREALEISSQQEYLKLKGRYEALQRSQRNLLGEDLGPL 121

HSP 2 Score: 39.6614 bits (91), Expect = 6.230e-44
Identity = 20/39 (51.28%), Postives = 27/39 (69.23%), Query Frame = 3

Query:  630 KELEQLERQLGSSLGRVRSLKNRNQLDKLSELQGKEEML 746
            KELE LERQL  SL ++RS + +  LD+L++ Q KE  L
Sbjct:  124 KELESLERQLDMSLKQIRSTRTQLMLDQLTDYQRKEHAL 162

[Close]

BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSJ (MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.508e-42
Identity = 78/122 (63.93%), Postives = 94/122 (77.05%), Query Frame = 1

Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQYWGGRFGTLRL 627
            MGRGKVELKRIENKI+RQVTFAKRRNGLLKKAYELS+LCDAEVALIIFS RG+L+EF SS  M++TLE+Y  C+Y +  A   +A E + +Y+EY+KLK + E LQ  QR   G   G L +
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERYRSCNYNSQDA---AAPENEINYQEYLKLKTRVEFLQTTQRNILGEDLGPLSM 119

HSP 2 Score: 41.9726 bits (97), Expect = 9.508e-42
Identity = 21/39 (53.85%), Postives = 29/39 (74.36%), Query Frame = 3

Query:  630 KELEQLERQLGSSLGRVRSLKNRNQLDKLSELQGKEEML 746
            KELEQLE Q+  SL ++RS KN+  LD+L +L+ KE+ L
Sbjct:  120 KELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQL 158

[Close]

BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSI (MADS-box transcription factor 1 OS=Oryza sativa subsp. indica GN=MADS1 PE=2 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 9.508e-42
Identity = 78/122 (63.93%), Postives = 94/122 (77.05%), Query Frame = 1

Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQYWGGRFGTLRL 627
            MGRGKVELKRIENKI+RQVTFAKRRNGLLKKAYELS+LCDAEVALIIFS RG+L+EF SS  M++TLE+Y  C+Y +  A   +A E + +Y+EY+KLK + E LQ  QR   G   G L +
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERYRSCNYNSQDA---AAPENEINYQEYLKLKTRVEFLQTTQRNILGEDLGPLSM 119

HSP 2 Score: 41.9726 bits (97), Expect = 9.508e-42
Identity = 21/39 (53.85%), Postives = 29/39 (74.36%), Query Frame = 3

Query:  630 KELEQLERQLGSSLGRVRSLKNRNQLDKLSELQGKEEML 746
            KELEQLE Q+  SL ++RS KN+  LD+L +L+ KE+ L
Sbjct:  120 KELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQL 158

[Close]

BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 6.078e-41
Identity = 77/115 (66.96%), Postives = 91/115 (79.13%), Query Frame = 1

Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSYGTLQANHQSAKETQAS-YEEYIKLKEKHEALQHLQRQYWG 603
            MGRGKVELKRIENKI+RQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS+RG+L+EF +S  M++TLE+Y  C+Y        +A ET+ S Y+EY+KLK + E LQ  QR   G
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLG 115

HSP 2 Score: 41.2022 bits (95), Expect = 6.078e-41
Identity = 21/39 (53.85%), Postives = 28/39 (71.79%), Query Frame = 3

Query:  630 KELEQLERQLGSSLGRVRSLKNRNQLDKLSELQGKEEML 746
            KELEQLE Q+  SL  +RS KN+  LD++ EL+ KE+ L
Sbjct:  124 KELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQL 162

[Close]

BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 6.078e-41
Identity = 77/115 (66.96%), Postives = 91/115 (79.13%), Query Frame = 1

Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSYGTLQANHQSAKETQAS-YEEYIKLKEKHEALQHLQRQYWG 603
            MGRGKVELKRIENKI+RQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS+RG+L+EF +S  M++TLE+Y  C+Y        +A ET+ S Y+EY+KLK + E LQ  QR   G
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLG 115

HSP 2 Score: 41.2022 bits (95), Expect = 6.078e-41
Identity = 21/39 (53.85%), Postives = 28/39 (71.79%), Query Frame = 3

Query:  630 KELEQLERQLGSSLGRVRSLKNRNQLDKLSELQGKEEML 746
            KELEQLE Q+  SL  +RS KN+  LD++ EL+ KE+ L
Sbjct:  124 KELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQL 162

[Close]

BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.212e-39
Identity = 81/120 (67.50%), Postives = 91/120 (75.83%), Query Frame = 1

Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQYWGGRFGTL 621
            MGRG+VELKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF  S  + +TLE+Y+ C Y    +N+ +  ETQ+ Y E  KLK K EALQ  QR   G   G L
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF-GSAGITKTLERYQHCCYNAQDSNN-ALSETQSWYHEMSKLKAKFEALQRTQRHLLGEDLGPL 118

HSP 2 Score: 34.6538 bits (78), Expect = 3.212e-39
Identity = 16/39 (41.03%), Postives = 26/39 (66.67%), Query Frame = 3

Query:  630 KELEQLERQLGSSLGRVRSLKNRNQLDKLSELQGKEEML 746
            KEL+QLE+QL  +L + R  K +  ++++ EL+ KE  L
Sbjct:  121 KELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQL 159

[Close]

BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 2.882e-37
Identity = 80/123 (65.04%), Postives = 90/123 (73.17%), Query Frame = 1

Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSYGTLQANHQSA-KETQASYEEYIKLKEKHEALQHLQRQYWGGRFGTLRL 627
            MGRG+VELKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF  S  +++TLEKY  C Y    +N   A  E Q+ Y+E  +LK K E LQ  QR   G   G L +
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF-GSAGINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPLSI 122

HSP 2 Score: 34.2686 bits (77), Expect = 2.882e-37
Identity = 16/39 (41.03%), Postives = 26/39 (66.67%), Query Frame = 3

Query:  630 KELEQLERQLGSSLGRVRSLKNRNQLDKLSELQGKEEML 746
            KEL+QLE+QL  SL + R  K +  ++++ +L+ KE  L
Sbjct:  123 KELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQL 161

[Close]

BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 4.895e-37
Identity = 70/114 (61.40%), Postives = 87/114 (76.32%), Query Frame = 1

Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQYWG 603
            MGRGKV L+RIENKI+RQVTFAKRRNGLLKKAYELS+LCDAEVAL++FS  G+LY+F SS +M +TLE+Y+R  Y +  A   ++ E Q +Y+EY+ LK   E LQ  QR   G
Sbjct:    1 MGRGKVVLQRIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSSSSNMLKTLERYQRYIYASQDAAAPTSDEMQNNYQEYVNLKAHVEILQQSQRNLLG 114

HSP 2 Score: 38.1206 bits (87), Expect = 4.895e-37
Identity = 20/41 (48.78%), Postives = 29/41 (70.73%), Query Frame = 3

Query:  624 AXKELEQLERQLGSSLGRVRSLKNRNQLDKLSELQGKEEML 746
            A  ELEQLE Q+  +L ++RS K +  LD+L +L+ KE+ML
Sbjct:  121 ATNELEQLESQVVRTLKQIRSRKTQVLLDELCDLKRKEQML 161

The following BLAST results are available for this feature:

BLAST of EY728832 vs. ExPASy Swiss-Prot

BLAST of EY728832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121


Match Name	E-value	Identity	Description
MADS7_ORYSI	1.270e-44	68.97	MADS-box transcription factor 7 OS=Oryza sativa su...	[more]
MTF1_PEA	1.655e-44	65.04	MADS-box transcription factor 1 OS=Pisum sativum G...	[more]
AGL9_SOLLC	6.230e-44	67.77	Agamous-like MADS-box protein AGL9 homolog OS=Sola...	[more]
MADS1_ORYSJ	9.508e-42	63.93	MADS-box transcription factor 1 OS=Oryza sativa su...	[more]
MADS1_ORYSI	9.508e-42	63.93	MADS-box transcription factor 1 OS=Oryza sativa su...	[more]
MADS5_ORYSJ	6.078e-41	66.96	MADS-box transcription factor 5 OS=Oryza sativa su...	[more]
MADS5_ORYSI	6.078e-41	66.96	MADS-box transcription factor 5 OS=Oryza sativa su...	[more]
MADS6_ORYSJ	3.212e-39	67.50	MADS-box transcription factor 6 OS=Oryza sativa su...	[more]
MAD17_ORYSJ	2.882e-37	65.04	MADS-box transcription factor 17 OS=Oryza sativa s...	[more]
MAD34_ORYSJ	4.895e-37	61.40	MADS-box transcription factor 34 OS=Oryza sativa s...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-704-009-B11-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY728832 ID=EY728832; Name=EY728832; organism=Citrus sinensis; type=EST; length=879bp
CACGCGTCCGGATGAAACAAACCAATTAGCAAAATTAAAGGTACCCAACT
CAGATCAAGTCAATTTAATCTCTCCTTTTAGGAGTGTTCTATACTAAATC
TTAAACCTAGCTATCAAAGCAACCTGATCCCAGCTTCTTGCCCTAAACAA
CAAGATCTGCAGAAACAAAATCTACTAATTTATAATTTATTTTTTAGCCT
AAAGAAACCCAAAAAAAACAAAAAATCATCCAGCTATCCAGCACTTGTAA
GTATATTAATAATGGGAAGGGGAAAAGTAGAGCTGAAGAGGATAGAGAAC
AAAATAAATCGACAGGTGACTTTTGCAAAGAGAAGGAATGGATTGTTAAA
GAAAGCTTATGAGCTCTCAGTTTTGTGTGATGCTGAGGTTGCTCTTATCA
TCTTCTCTAGCCGCGGGAAGCTCTATGAATTCTGCAGCAGCCCTAGTATG
CACCAGACACTTGAGAAGTATGAAAGGTGTAGTTATGGAACACTGCAAGC
AAATCATCAATCAGCCAAAGAGACGCAGGCCAGCTACGAGGAATACATAA
AACTCAAAGAGAAACATGAGGCCCTACAGCACTTGCAAAGACAATATTGG
GGGGGAAGATTTGGGACGCTTAGGCTTANAAGGAGTTGGAACAGCTTGAG
AGACAGCTGGGCAGTTCATTGGGCCGAGTAAGGTCACTCAAGAACCGGAA
TCAGCTGGATAAGCTTTCTGAACTTCAAGGAAAGGAAGAAATGTTGCTGG
GAAGCCCATATATTTAAGTATGAAGTTGGGAGGAATAATGCAGTCGGAAT
CCATCATGGCAGTGAGAACAAATAATAACACAATGTCATCGAGGTCTTGG
CCTACACATGTATGCCTGGTCCCCTGATA