EY728832

Overview
NameEY728832
Unique NameEY728832
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MEF2A_XENLA (Myocyte-specific enhancer factor 2A homolog OS=Xenopus laevis GN=mef2a PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.695e-15
Identity = 41/70 (58.57%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKY 471
            MGR K+++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF+S  KL+++ S+  M + L KY
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST-DMDKVLLKY 69          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MEF2A_RAT (Myocyte-specific enhancer factor 2A OS=Rattus norvegicus GN=Mef2a PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.695e-15
Identity = 41/70 (58.57%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKY 471
            MGR K+++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF+S  KL+++ S+  M + L KY
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST-DMDKVLLKY 69          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MEF2A_PONAB (Myocyte-specific enhancer factor 2A OS=Pongo abelii GN=MEF2A PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.695e-15
Identity = 41/70 (58.57%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKY 471
            MGR K+++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF+S  KL+++ S+  M + L KY
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST-DMDKVLLKY 69          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MEF2A_PIG (Myocyte-specific enhancer factor 2A OS=Sus scrofa GN=MEF2A PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.695e-15
Identity = 41/70 (58.57%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKY 471
            MGR K+++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF+S  KL+++ S+  M + L KY
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST-DMDKVLLKY 69          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MEF2A_MOUSE (Myocyte-specific enhancer factor 2A OS=Mus musculus GN=Mef2a PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.695e-15
Identity = 41/70 (58.57%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKY 471
            MGR K+++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF+S  KL+++ S+  M + L KY
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST-DMDKVLLKY 69          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MEF2A_HUMAN (Myocyte-specific enhancer factor 2A OS=Homo sapiens GN=MEF2A PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.695e-15
Identity = 41/70 (58.57%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKY 471
            MGR K+++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF+S  KL+++ S+  M + L KY
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST-DMDKVLLKY 69          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MEF2A_CHICK (Myocyte-specific enhancer factor 2A OS=Gallus gallus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.695e-15
Identity = 41/70 (58.57%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKY 471
            MGR K+++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF+S  KL+++ S+  M + L KY
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST-DMDKVLLKY 69          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MEF2A_BOVIN (Myocyte-specific enhancer factor 2A OS=Bos taurus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.695e-15
Identity = 41/70 (58.57%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKY 471
            MGR K+++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF+S  KL+++ S+  M + L KY
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST-DMDKVLLKY 69          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MAD47_ORYSJ (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica GN=MADS47 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.695e-15
Identity = 44/87 (50.57%), Postives = 61/87 (70.11%), Query Frame = 1
Query:  268 RGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSYGTLQANHQSAKETQ 528
            R ++ ++RI+N   RQVTF+KRR GL KKA ELS+LCDAEV L++FS+ GKL++F S+ SM Q +++Y   S  TLQ    S  + Q
Sbjct:   22 RERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFAST-SMEQIIDRYNSHS-KTLQRAEPSQLDLQ 106          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MAD55_ORYSJ (MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica GN=MADS55 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 4.826e-15
Identity = 41/70 (58.57%), Postives = 56/70 (80.00%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKY 471
            M R + E++RIE+   RQVTF+KRR GL KKA EL+VLCDA+VAL++FSS GKL +F SS +M++ ++KY
Sbjct:    1 MARERREIRRIESAAARQVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQFASS-NMNEIIDKY 69          
The following BLAST results are available for this feature:
BLAST of EY728832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
MEF2A_XENLA3.695e-1558.57Myocyte-specific enhancer factor 2A homolog OS=Xen... [more]
MEF2A_RAT3.695e-1558.57Myocyte-specific enhancer factor 2A OS=Rattus norv... [more]
MEF2A_PONAB3.695e-1558.57Myocyte-specific enhancer factor 2A OS=Pongo abeli... [more]
MEF2A_PIG3.695e-1558.57Myocyte-specific enhancer factor 2A OS=Sus scrofa ... [more]
MEF2A_MOUSE3.695e-1558.57Myocyte-specific enhancer factor 2A OS=Mus musculu... [more]
MEF2A_HUMAN3.695e-1558.57Myocyte-specific enhancer factor 2A OS=Homo sapien... [more]
MEF2A_CHICK3.695e-1558.57Myocyte-specific enhancer factor 2A OS=Gallus gall... [more]
MEF2A_BOVIN3.695e-1558.57Myocyte-specific enhancer factor 2A OS=Bos taurus ... [more]
MAD47_ORYSJ3.695e-1550.57MADS-box transcription factor 47 OS=Oryza sativa s... [more]
MAD55_ORYSJ4.826e-1558.57MADS-box transcription factor 55 OS=Oryza sativa s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-009-B11-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728832 ID=EY728832; Name=EY728832; organism=Citrus sinensis; type=EST; length=879bp
CACGCGTCCGGATGAAACAAACCAATTAGCAAAATTAAAGGTACCCAACT
CAGATCAAGTCAATTTAATCTCTCCTTTTAGGAGTGTTCTATACTAAATC
TTAAACCTAGCTATCAAAGCAACCTGATCCCAGCTTCTTGCCCTAAACAA
CAAGATCTGCAGAAACAAAATCTACTAATTTATAATTTATTTTTTAGCCT
AAAGAAACCCAAAAAAAACAAAAAATCATCCAGCTATCCAGCACTTGTAA
GTATATTAATAATGGGAAGGGGAAAAGTAGAGCTGAAGAGGATAGAGAAC
AAAATAAATCGACAGGTGACTTTTGCAAAGAGAAGGAATGGATTGTTAAA
GAAAGCTTATGAGCTCTCAGTTTTGTGTGATGCTGAGGTTGCTCTTATCA
TCTTCTCTAGCCGCGGGAAGCTCTATGAATTCTGCAGCAGCCCTAGTATG
CACCAGACACTTGAGAAGTATGAAAGGTGTAGTTATGGAACACTGCAAGC
AAATCATCAATCAGCCAAAGAGACGCAGGCCAGCTACGAGGAATACATAA
AACTCAAAGAGAAACATGAGGCCCTACAGCACTTGCAAAGACAATATTGG
GGGGGAAGATTTGGGACGCTTAGGCTTANAAGGAGTTGGAACAGCTTGAG
AGACAGCTGGGCAGTTCATTGGGCCGAGTAAGGTCACTCAAGAACCGGAA
TCAGCTGGATAAGCTTTCTGAACTTCAAGGAAAGGAAGAAATGTTGCTGG
GAAGCCCATATATTTAAGTATGAAGTTGGGAGGAATAATGCAGTCGGAAT
CCATCATGGCAGTGAGAACAAATAATAACACAATGTCATCGAGGTCTTGG
CCTACACATGTATGCCTGGTCCCCTGATA
back to top