EY728832

Overview
NameEY728832
Unique NameEY728832
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MEF2D_XENLA (Myocyte-specific enhancer factor 2D homolog OS=Xenopus laevis GN=mef2d PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.303e-15
Identity = 40/70 (57.14%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKY 471
            MGR K++++RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF+   KL+++ S+  M + L KY
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYAST-DMDKVLLKY 69          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MEF2D_RAT (Myocyte-specific enhancer factor 2D OS=Rattus norvegicus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.303e-15
Identity = 40/70 (57.14%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKY 471
            MGR K++++RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF+   KL+++ S+  M + L KY
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYAST-DMDKVLLKY 69          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MEF2D_MOUSE (Myocyte-specific enhancer factor 2D OS=Mus musculus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.303e-15
Identity = 40/70 (57.14%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKY 471
            MGR K++++RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF+   KL+++ S+  M + L KY
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYAST-DMDKVLLKY 69          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MEF2D_HUMAN (Myocyte-specific enhancer factor 2D OS=Homo sapiens GN=MEF2D PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.303e-15
Identity = 40/70 (57.14%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKY 471
            MGR K++++RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF+   KL+++ S+  M + L KY
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYAST-DMDKVLLKY 69          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MEF2B_HUMAN (Myocyte-specific enhancer factor 2B OS=Homo sapiens GN=MEF2B PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 6.303e-15
Identity = 41/74 (55.41%), Postives = 56/74 (75.68%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCS 483
            MGR K+++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF+S  +L+++ S+  M + L KY   S
Sbjct:    1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST-DMDRVLLKYTEYS 73          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MEF2B_MOUSE (Myocyte-specific enhancer factor 2B OS=Mus musculus GN=Mef2b PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.075e-14
Identity = 41/74 (55.41%), Postives = 56/74 (75.68%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCS 483
            MGR K+++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD ++ALIIF+S  +L+++ SS  M + L KY   S
Sbjct:    1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCDIALIIFNSAQRLFQYASS-DMDRVLLKYTEYS 73          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: AP32_ASAEU (MADS-box protein AeAP3-2 (Fragment) OS=Asarum europaeum GN=AP3-2 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.805e-13
Identity = 36/89 (40.45%), Postives = 55/89 (61.80%), Query Frame = 1
Query:  340 GLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSP-SMHQTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQYWG 603
            GLLKKA EL++LCDA++ +IIFSS GK++EF S P SM + +++Y++     L  N     + Q  Y E  ++K + + LQ   R + G
Sbjct:    2 GLLKKARELAILCDAQLGVIIFSSSGKMFEFSSPPISMREIIDRYQK-----LSGNCAPVYDNQQVYCEITRMKNEIDKLQATMRHFAG 85          

HSP 2 Score: 30.8018 bits (68), Expect = 1.805e-13
Identity = 17/38 (44.74%), Postives = 24/38 (63.16%), Query Frame = 3
Query:  633 ELEQLERQLGSSLGRVRSLKNRNQLDKLSELQGKEEML 746
            E+ QLE+QL  S+ +VRS K +    +L  L+ KE ML
Sbjct:   95 EMLQLEQQLEISVNKVRSRKEQLLQQQLDNLRRKENML 132          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: RLM1_YEAST (Transcription factor RLM1 OS=Saccharomyces cerevisiae GN=RLM1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.237e-11
Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS 438
            MGR K+E++RI +  NR VTF KR+ GL KKA+ELSVLC  ++A+II  S    YEF S
Sbjct:    1 MGRRKIEIQRISDDRNRAVTFIKRKAGLFKKAHELSVLCQVDIAVIILGSNNTFYEFSS 59          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: PVG4_SCHPO (MADS-box transcription factor pvg4 OS=Schizosaccharomyces pombe GN=pvg4 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.228e-11
Identity = 40/110 (36.36%), Postives = 56/110 (50.91%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMH-----QTLEKYE---RCSYGTLQANHQSAKETQASYEEYIKLKEKH 567
            MGR K+ +  I +  +R VTF KR+ GL KKAYEL+VL D EVA+ +   +G+L+ FCSS          TL  YE   R  + +      S    + +   +  L  KH
Sbjct:    1 MGRKKISIAPITDDRSRSVTFVKRKQGLYKKAYELAVLADCEVAVTVIDRKGRLHVFCSSDYQRTLQQLNTLSIYELKNRSHFSSSPVEESSTVSPETTTGSFTPLNNKH 110          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: AGL61_ARATH (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.522e-11
Identity = 41/121 (33.88%), Postives = 69/121 (57.02%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSYGTLQANHQSAKETQASYEEYIKL----------KEKHEALQHLQRQ 594
            +GR K+ + +I+ + +RQVTF+KRR GL KKA EL  LC AE+ +I+FS   K + F   PS+   L++Y   +  +L  + Q      AS E  ++L          K+K +A++ ++++
Sbjct:   62 IGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSF-GHPSVESVLDRYVSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAMEEMRKE 181          
The following BLAST results are available for this feature:
BLAST of EY728832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
MEF2D_XENLA6.303e-1557.14Myocyte-specific enhancer factor 2D homolog OS=Xen... [more]
MEF2D_RAT6.303e-1557.14Myocyte-specific enhancer factor 2D OS=Rattus norv... [more]
MEF2D_MOUSE6.303e-1557.14Myocyte-specific enhancer factor 2D OS=Mus musculu... [more]
MEF2D_HUMAN6.303e-1557.14Myocyte-specific enhancer factor 2D OS=Homo sapien... [more]
MEF2B_HUMAN6.303e-1555.41Myocyte-specific enhancer factor 2B OS=Homo sapien... [more]
MEF2B_MOUSE1.075e-1455.41Myocyte-specific enhancer factor 2B OS=Mus musculu... [more]
AP32_ASAEU1.805e-1340.45MADS-box protein AeAP3-2 (Fragment) OS=Asarum euro... [more]
RLM1_YEAST3.237e-1155.93Transcription factor RLM1 OS=Saccharomyces cerevis... [more]
PVG4_SCHPO4.228e-1136.36MADS-box transcription factor pvg4 OS=Schizosaccha... [more]
AGL61_ARATH5.522e-1133.88Agamous-like MADS-box protein AGL61 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-009-B11-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728832 ID=EY728832; Name=EY728832; organism=Citrus sinensis; type=EST; length=879bp
CACGCGTCCGGATGAAACAAACCAATTAGCAAAATTAAAGGTACCCAACT
CAGATCAAGTCAATTTAATCTCTCCTTTTAGGAGTGTTCTATACTAAATC
TTAAACCTAGCTATCAAAGCAACCTGATCCCAGCTTCTTGCCCTAAACAA
CAAGATCTGCAGAAACAAAATCTACTAATTTATAATTTATTTTTTAGCCT
AAAGAAACCCAAAAAAAACAAAAAATCATCCAGCTATCCAGCACTTGTAA
GTATATTAATAATGGGAAGGGGAAAAGTAGAGCTGAAGAGGATAGAGAAC
AAAATAAATCGACAGGTGACTTTTGCAAAGAGAAGGAATGGATTGTTAAA
GAAAGCTTATGAGCTCTCAGTTTTGTGTGATGCTGAGGTTGCTCTTATCA
TCTTCTCTAGCCGCGGGAAGCTCTATGAATTCTGCAGCAGCCCTAGTATG
CACCAGACACTTGAGAAGTATGAAAGGTGTAGTTATGGAACACTGCAAGC
AAATCATCAATCAGCCAAAGAGACGCAGGCCAGCTACGAGGAATACATAA
AACTCAAAGAGAAACATGAGGCCCTACAGCACTTGCAAAGACAATATTGG
GGGGGAAGATTTGGGACGCTTAGGCTTANAAGGAGTTGGAACAGCTTGAG
AGACAGCTGGGCAGTTCATTGGGCCGAGTAAGGTCACTCAAGAACCGGAA
TCAGCTGGATAAGCTTTCTGAACTTCAAGGAAAGGAAGAAATGTTGCTGG
GAAGCCCATATATTTAAGTATGAAGTTGGGAGGAATAATGCAGTCGGAAT
CCATCATGGCAGTGAGAACAAATAATAACACAATGTCATCGAGGTCTTGG
CCTACACATGTATGCCTGGTCCCCTGATA
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