EY728832

Overview
NameEY728832
Unique NameEY728832
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: GGM13_GNEGN (MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.587e-27
Identity = 61/115 (53.04%), Postives = 81/115 (70.43%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS-SPSMHQTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQYWG 603
            MGRGK+E+KRIEN  NRQVTF+KRR GLLKKA+ELSVLCDAE+ LIIFSS GKL+E+ S S SM + +E+Y++ S   +     +  + Q  Y E  ++K ++E LQ   R+  G
Sbjct:    1 MGRGKIEIKRIENTTNRQVTFSKRRGGLLKKAHELSVLCDAELGLIIFSSSGKLFEYSSASSSMKKIIERYQKVSGARI-----TEYDNQHLYCEMTRMKNENEKLQTNIRRMMG 110          

HSP 2 Score: 33.113 bits (74), Expect = 3.587e-27
Identity = 18/38 (47.37%), Postives = 24/38 (63.16%), Query Frame = 3
Query:  633 ELEQLERQLGSSLGRVRSLKNRNQLDKLSELQGKEEML 746
            EL  L +QL S+  RVRS KN+  L +L  L+ KE +L
Sbjct:  120 ELHHLGQQLESASSRVRSRKNQLMLQQLENLRRKERIL 157          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: AG_BRANA (Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.179e-27
Identity = 72/141 (51.06%), Postives = 95/141 (67.38%), Query Frame = 1
Query:  265 GRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSYGTLQANHQSAKETQASY--EEYIKLKEKHEALQHLQRQYWGGRFGTL----------RLXRSWNSLR 651
            GRGK+E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FSSRG+LYE+ S+ S+  T+E+Y++    +  +N  S  E  A Y  +E  KL+++  ++Q+  RQ  G   G++          RL RS N +R
Sbjct:   18 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-SNNSVKGTIERYKKAI--SDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLDRSVNRIR 155          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: AGL5_ARATH (Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.728e-26
Identity = 62/120 (51.67%), Postives = 84/120 (70.00%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQYWGGRFGTL 621
            +GRGK+E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVAL+IFS+RG+LYE+ ++ S+  T+E+Y++     +     +   TQ   +E  KL+ +   +Q+L R   G   G+L
Sbjct:   16 IGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANN-SVRGTIERYKKACSDAVNPPTITEANTQYYQQEASKLRRQIRDIQNLNRHILGESLGSL 134          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: AG_SOLLC (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.954e-26
Identity = 59/122 (48.36%), Postives = 81/122 (66.39%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQYWGGRFGTLRL 627
            +GRGK+E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVAL++FS+RG+LYE+ ++ S+  T+E+Y++    +      S    Q   +E  KL+ +   L +  R   G     ++L
Sbjct:   17 LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEYANN-SVKATIERYKKACSDSSNTGSVSEANAQYYQQEASKLRAQIGNLMNQNRNMMGEALAGMKL 137          

HSP 2 Score: 26.5646 bits (57), Expect = 2.954e-26
Identity = 11/36 (30.56%), Postives = 22/36 (61.11%), Query Frame = 3
Query:  630 KELEQLERQLGSSLGRVRSLKNRNQLDKLSELQGKE 737
            KEL+ LE+++   + ++RS KN     ++  +Q +E
Sbjct:  138 KELKNLEQRIEKGISKIRSKKNELLFAEIEYMQKRE 173          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: AGL14_ARATH (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 3.563e-26
Identity = 66/114 (57.89%), Postives = 82/114 (71.93%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQYWG 603
            M RGK E+KRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVALIIFS RGKLYEF SS S+ +T+E+Y++     L +NH+    +Q S +E   L  K E L+   R+  G
Sbjct:    1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSSIPKTVERYQK-RIQDLGSNHKRNDNSQQSKDETYGLARKIEHLEISTRKMMG 113          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MADS3_ORYSJ (MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.653e-26
Identity = 64/123 (52.03%), Postives = 86/123 (69.92%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHL-QRQYWGGRFGTLRL 627
            MGRGK+E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FSSRG+LYE+ ++ S+  T+E+Y++ +  T  +   +    Q   +E  KL+++  +LQ+   R   G    T+ L
Sbjct:    1 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN-SVKSTVERYKKANSDTSNSGTVAEVNAQHYQQESSKLRQQISSLQNANSRTIVGDSINTMSL 122          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: AG_PANGI (Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.653e-26
Identity = 61/120 (50.83%), Postives = 84/120 (70.00%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQYWGGRFGTL 621
            +GRGK+E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ ++ S+  T+E+Y++    +   +  S    Q   +E  KL+++  ++Q   R   G   G+L
Sbjct:   17 LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANN-SVKGTIERYKKACTDSPNTSSVSEANAQFYQQEASKLRQEISSIQKNNRNMMGESLGSL 135          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: AG_PETHY (Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.077e-26
Identity = 68/125 (54.40%), Postives = 87/125 (69.60%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYER-CSYGTLQANHQSAKETQASY--EEYIKLKEKHEALQHLQRQYWGGRFGTLRL 627
            +GRGK+E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FSSRG+LYE+ ++ S+  T+E+Y++ CS     +N  S  E  A Y  +E  KL+ +   LQ+  R + G     L L
Sbjct:   17 LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN-SVKATIERYKKACSD---SSNTGSIAEANAQYYQQEASKLRAQIGNLQNQNRNFLGESLAALNL 137          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MAD13_ORYSJ (MADS-box transcription factor 13 OS=Oryza sativa subsp. japonica GN=MADS13 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.102e-25
Identity = 60/124 (48.39%), Postives = 82/124 (66.13%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSY--GTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQYWGGRFGTLRL 627
            MGRG++E+KRIEN  +RQVTF KRRNGLLKKAYELSVLCDAEVALI+FSSRG+LYE+ ++ ++  T+++Y++      T  A        Q   +E  KL+ + + LQ+  +   G     L L
Sbjct:    1 MGRGRIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNNVKATIDRYKKAHACGSTSGAPLIEVNAQQYYQQESAKLRHQIQMLQNTNKHLVGDNVSNLSL 124          

HSP 2 Score: 25.7942 bits (55), Expect = 1.102e-25
Identity = 11/36 (30.56%), Postives = 22/36 (61.11%), Query Frame = 3
Query:  630 KELEQLERQLGSSLGRVRSLKNRNQLDKLSELQGKE 737
            KEL+QLE +L   + ++R+ KN     +++ +  +E
Sbjct:  125 KELKQLESRLEKGISKIRARKNELLASEINYMAKRE 160          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: AG_TOBAC (Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.768e-25
Identity = 63/122 (51.64%), Postives = 81/122 (66.39%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQYWGGRFGTLRL 627
            +GRGK+E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FSSRG+LYE+ ++ S+  T+E+Y++    +      S    Q   +E  KL+ +   LQ+  R   G     L L
Sbjct:   17 LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN-SVKATIERYKKACSDSSNTGSISEANAQYYQQEASKLRAQIGNLQNQNRNMLGESLAALSL 137          
The following BLAST results are available for this feature:
BLAST of EY728832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
GGM13_GNEGN3.587e-2753.04MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 P... [more]
AG_BRANA7.179e-2751.06Floral homeotic protein AGAMOUS OS=Brassica napus ... [more]
AGL5_ARATH2.728e-2651.67Agamous-like MADS-box protein AGL5 OS=Arabidopsis ... [more]
AG_SOLLC2.954e-2648.36Floral homeotic protein AGAMOUS OS=Solanum lycoper... [more]
AGL14_ARATH3.563e-2657.89Agamous-like MADS-box protein AGL14 OS=Arabidopsis... [more]
MADS3_ORYSJ4.653e-2652.03MADS-box transcription factor 3 OS=Oryza sativa su... [more]
AG_PANGI4.653e-2650.83Floral homeotic protein AGAMOUS OS=Panax ginseng G... [more]
AG_PETHY6.077e-2654.40Floral homeotic protein AGAMOUS OS=Petunia hybrida... [more]
MAD13_ORYSJ1.102e-2548.39MADS-box transcription factor 13 OS=Oryza sativa s... [more]
AG_TOBAC1.768e-2551.64Floral homeotic protein AGAMOUS OS=Nicotiana tabac... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-009-B11-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728832 ID=EY728832; Name=EY728832; organism=Citrus sinensis; type=EST; length=879bp
CACGCGTCCGGATGAAACAAACCAATTAGCAAAATTAAAGGTACCCAACT
CAGATCAAGTCAATTTAATCTCTCCTTTTAGGAGTGTTCTATACTAAATC
TTAAACCTAGCTATCAAAGCAACCTGATCCCAGCTTCTTGCCCTAAACAA
CAAGATCTGCAGAAACAAAATCTACTAATTTATAATTTATTTTTTAGCCT
AAAGAAACCCAAAAAAAACAAAAAATCATCCAGCTATCCAGCACTTGTAA
GTATATTAATAATGGGAAGGGGAAAAGTAGAGCTGAAGAGGATAGAGAAC
AAAATAAATCGACAGGTGACTTTTGCAAAGAGAAGGAATGGATTGTTAAA
GAAAGCTTATGAGCTCTCAGTTTTGTGTGATGCTGAGGTTGCTCTTATCA
TCTTCTCTAGCCGCGGGAAGCTCTATGAATTCTGCAGCAGCCCTAGTATG
CACCAGACACTTGAGAAGTATGAAAGGTGTAGTTATGGAACACTGCAAGC
AAATCATCAATCAGCCAAAGAGACGCAGGCCAGCTACGAGGAATACATAA
AACTCAAAGAGAAACATGAGGCCCTACAGCACTTGCAAAGACAATATTGG
GGGGGAAGATTTGGGACGCTTAGGCTTANAAGGAGTTGGAACAGCTTGAG
AGACAGCTGGGCAGTTCATTGGGCCGAGTAAGGTCACTCAAGAACCGGAA
TCAGCTGGATAAGCTTTCTGAACTTCAAGGAAAGGAAGAAATGTTGCTGG
GAAGCCCATATATTTAAGTATGAAGTTGGGAGGAATAATGCAGTCGGAAT
CCATCATGGCAGTGAGAACAAATAATAACACAATGTCATCGAGGTCTTGG
CCTACACATGTATGCCTGGTCCCCTGATA
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