EY728832

Overview
NameEY728832
Unique NameEY728832
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: AGL15_ARATH (Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana GN=AGL15 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.430e-25
Identity = 58/106 (54.72%), Postives = 73/106 (68.87%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQ 579
            MGRGK+E+KRIEN  +RQVTF+KRR+GLLKKA ELSVLCDAEVA+I+FS  GKL+E+ SS  M QTL +Y      +     +   E     ++  KL+EKH  LQ
Sbjct:    1 MGRGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEY-SSTGMKQTLSRYGNHQSSSASKAEEDCAEVDILKDQLSKLQEKHLQLQ 105          

HSP 2 Score: 28.4906 bits (62), Expect = 2.430e-25
Identity = 19/48 (39.58%), Postives = 27/48 (56.25%), Query Frame = 3
Query:  597 LGGKIWDA*AXKELEQLERQLGSSLGRVRSLKNRNQLDKLSELQGKEE 740
            L GK  +    KEL+ LE+QL  +L  VR  K R   ++L E + KE+
Sbjct:  104 LQGKGLNPLTFKELQSLEQQLYHALITVRERKERLLTNQLEESRLKEQ 151          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSJ (MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.145e-25
Identity = 61/115 (53.04%), Postives = 86/115 (74.78%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSYGTLQANHQS-AKETQASYEEYIKLKEKHEALQHLQRQYWG 603
            M RG+ ELKRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVALI+FS RG+LYEF S+PS+ +T+++Y+  +Y     N+++  ++ Q   ++ + L +K EAL   +R+  G
Sbjct:    1 MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYK--AYTKDHVNNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILG 113          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSI (MADS-box transcription factor 56 OS=Oryza sativa subsp. indica GN=MADS56 PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 5.145e-25
Identity = 61/115 (53.04%), Postives = 86/115 (74.78%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSYGTLQANHQS-AKETQASYEEYIKLKEKHEALQHLQRQYWG 603
            M RG+ ELKRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVALI+FS RG+LYEF S+PS+ +T+++Y+  +Y     N+++  ++ Q   ++ + L +K EAL   +R+  G
Sbjct:    1 MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYK--AYTKDHVNNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILG 113          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: FBP24_PETHY (MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.702e-24
Identity = 59/118 (50.00%), Postives = 82/118 (69.49%), Query Frame = 1
Query:  253 ILIMGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSP-SMHQTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQYWG 603
            ++IMGRGK+E+KRIENK +RQVTF+KRR GLLKK +ELSVLCDA++ LIIFSS+GKL+E+CS P SM Q + +Y + +  +L       +     Y+E  K++     LQ   ++Y G
Sbjct:    1 MIIMGRGKIEVKRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCSQPHSMSQIISRYLQTTGASLPVEDNRVQ----LYDEVAKMRRDTLNLQLSLQRYKG 114          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: AGL19_ARATH (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.267e-23
Identity = 63/114 (55.26%), Postives = 81/114 (71.05%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQYWG 603
            M RGK E+KRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVAL+IFS R KLYEF SS S+  T+E+Y+R     +  NH+    +Q + +E   L +K E L+  +R+  G
Sbjct:    1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEF-SSSSIAATIERYQR-RIKEIGNNHKRNDNSQQARDETSGLTKKIEQLEISKRKLLG 112          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.823e-23
Identity = 61/119 (51.26%), Postives = 80/119 (67.23%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQYWGGRFGT 618
            M RGK ++KRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEV+LIIFS +GKLYEF SS +M  T+++Y R +   +     S +  Q    E   + +K E L+  +R+  G   GT
Sbjct:    1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASS-NMQDTIDRYLRHTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGT 118          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MAD20_ORYSJ (MADS-box transcription factor 20 OS=Oryza sativa subsp. japonica GN=MADS20 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 4.076e-22
Identity = 60/126 (47.62%), Postives = 85/126 (67.46%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS-PSMHQTLEKYER---CSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQYWGGRFGTLRL 627
            MGRGKV+++RIEN+++RQVTF+KRR GLLKKA+E++VLCD +VA I+FS++G L+ + SS  +M + LEKY+R    S G          E   SY ++IKL+ + EAL+  QR   G    +L L
Sbjct:    1 MGRGKVQVRRIENEVSRQVTFSKRRPGLLKKAHEIAVLCDVDVAAIVFSAKGNLFHYASSHTTMERILEKYDRHELLSEGNNVIEEFPELEGSMSY-DHIKLRGRIEALKKSQRNLMGQELDSLTL 125          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: M17_MAIZE (MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.076e-22
Identity = 56/123 (45.53%), Postives = 81/123 (65.85%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS-SPSMHQTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQYWGGRFGTLRL 627
            MGRGK+E+KRIEN  NRQVTF+KRR GLLKKA EL+VLCDA V ++IFSS GK++E+CS + S+ + +E+Y+  +     ++ +     Q    E  ++K + E L+   R+Y G    +L L
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPACSLRELIEQYQHAT----NSHFEEINHDQQILLEMTRMKNEMEKLETGIRRYTGDDLSSLTL 119          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MAD33_ORYSJ (MADS-box transcription factor 33 OS=Oryza sativa subsp. japonica GN=MADS33 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 5.324e-22
Identity = 57/124 (45.97%), Postives = 82/124 (66.13%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQYWGGRFGTLRLXR 633
            M RGKV+++RIEN ++RQVTF KRR GLLKKA ELSVLCDA+V +IIFSS+GKL+E  ++ +MH  +E+Y+    G  Q    + +  Q + +    L+E+ + LQ   R  +GG  G + L +
Sbjct:    1 MVRGKVQMRRIENPVHRQVTFCKRRGGLLKKARELSVLCDADVGVIIFSSQGKLHELATNGNMHNLVERYQSNVAGG-QMEPGALQRQQVAEQGIFLLREEIDLLQRGLRSTYGGGAGEMTLDK 123          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MAD50_ORYSJ (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.081e-22
Identity = 59/114 (51.75%), Postives = 79/114 (69.30%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQYWG 603
            M RGK ++KRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVALI+FS RGKLYEF S+ S  +T+E+Y   +   +  N    ++ +    +   L +K EAL+  +R+  G
Sbjct:    1 MVRGKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASA-STQKTIERYRTYTKENI-GNKTVQQDIEQVKADADGLAKKLEALETYKRKLLG 112          
The following BLAST results are available for this feature:
BLAST of EY728832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
AGL15_ARATH2.430e-2554.72Agamous-like MADS-box protein AGL15 OS=Arabidopsis... [more]
MAD56_ORYSJ5.145e-2553.04MADS-box transcription factor 56 OS=Oryza sativa s... [more]
MAD56_ORYSI5.145e-2553.04MADS-box transcription factor 56 OS=Oryza sativa s... [more]
FBP24_PETHY9.702e-2450.00MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24... [more]
AGL19_ARATH1.267e-2355.26Agamous-like MADS-box protein AGL19 OS=Arabidopsis... [more]
SOC1_ARATH2.823e-2351.26MADS-box protein SOC1 OS=Arabidopsis thaliana GN=S... [more]
MAD20_ORYSJ4.076e-2247.62MADS-box transcription factor 20 OS=Oryza sativa s... [more]
M17_MAIZE4.076e-2245.53MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=... [more]
MAD33_ORYSJ5.324e-2245.97MADS-box transcription factor 33 OS=Oryza sativa s... [more]
MAD50_ORYSJ9.081e-2251.75MADS-box transcription factor 50 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-009-B11-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728832 ID=EY728832; Name=EY728832; organism=Citrus sinensis; type=EST; length=879bp
CACGCGTCCGGATGAAACAAACCAATTAGCAAAATTAAAGGTACCCAACT
CAGATCAAGTCAATTTAATCTCTCCTTTTAGGAGTGTTCTATACTAAATC
TTAAACCTAGCTATCAAAGCAACCTGATCCCAGCTTCTTGCCCTAAACAA
CAAGATCTGCAGAAACAAAATCTACTAATTTATAATTTATTTTTTAGCCT
AAAGAAACCCAAAAAAAACAAAAAATCATCCAGCTATCCAGCACTTGTAA
GTATATTAATAATGGGAAGGGGAAAAGTAGAGCTGAAGAGGATAGAGAAC
AAAATAAATCGACAGGTGACTTTTGCAAAGAGAAGGAATGGATTGTTAAA
GAAAGCTTATGAGCTCTCAGTTTTGTGTGATGCTGAGGTTGCTCTTATCA
TCTTCTCTAGCCGCGGGAAGCTCTATGAATTCTGCAGCAGCCCTAGTATG
CACCAGACACTTGAGAAGTATGAAAGGTGTAGTTATGGAACACTGCAAGC
AAATCATCAATCAGCCAAAGAGACGCAGGCCAGCTACGAGGAATACATAA
AACTCAAAGAGAAACATGAGGCCCTACAGCACTTGCAAAGACAATATTGG
GGGGGAAGATTTGGGACGCTTAGGCTTANAAGGAGTTGGAACAGCTTGAG
AGACAGCTGGGCAGTTCATTGGGCCGAGTAAGGTCACTCAAGAACCGGAA
TCAGCTGGATAAGCTTTCTGAACTTCAAGGAAAGGAAGAAATGTTGCTGG
GAAGCCCATATATTTAAGTATGAAGTTGGGAGGAATAATGCAGTCGGAAT
CCATCATGGCAGTGAGAACAAATAATAACACAATGTCATCGAGGTCTTGG
CCTACACATGTATGCCTGGTCCCCTGATA
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