EY728832

Overview
NameEY728832
Unique NameEY728832
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: AGL15_BRANA (Agamous-like MADS-box protein AGL15 OS=Brassica napus GN=AGL15 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.081e-22
Identity = 63/131 (48.09%), Postives = 80/131 (61.07%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSYGT-------LQANHQSAKETQASYEEYIKLKEKH-------------EALQHLQRQ 594
            MGRGK+E+KRIEN  +RQVTF+KRR GLLKKA+ELSVLCDAEVA+I+FS  GKL+EF SS SM +TL +Y      +          N +   E     +E   L+EKH             + LQHL++Q
Sbjct:    1 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEF-SSTSMKKTLLRYGNYQISSDVPGINCKTENQEECTEVDLLKDEISMLQEKHLHMQGKPLNLLSLKELQHLEKQ 130          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: AGL12_ARATH (Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana GN=AGL12 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 9.081e-22
Identity = 58/129 (44.96%), Postives = 78/129 (60.47%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSYG-------TLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQYWGGRFGTLRL 627
            M RGK++LKRIEN ++RQVTF KRR GLLKKA ELSVLCDAE+ ++IFS +GKL+E  +  +M   ++KY +C+ G       T  A  Q         +E   LK++ E LQ      +GG  G + L
Sbjct:    1 MARGKIQLKRIENPVHRQVTFCKRRTGLLKKAKELSVLCDAEIGVVIFSPQGKLFELATKGTMEGMIDKYMKCTGGGRGSSSATFTAQEQLQPPNLDPKDEINVLKQEIEMLQKGISYMFGGGDGAMNL 129          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: DEF21_ANTMA (MADS-box protein defh21 OS=Antirrhinum majus GN=DEFH21 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.186e-21
Identity = 57/125 (45.60%), Postives = 83/125 (66.40%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSP-SMHQTLEKYERCSYGTLQANHQSA---KETQASYEEYIKLKEKHEALQHLQRQYWGGRFGTLR 624
            MGRGK+E+KRIEN  +RQVTF+KRR+GL+KK +ELSVLCDA++ LI+FS++GKL E+C+ P SM Q +++Y +   G L      A    +     +E  ++KE+   LQ   ++Y G    T+R
Sbjct:    1 MGRGKIEVKRIENNTSRQVTFSKRRSGLMKKTHELSVLCDAQIGLIVFSTKGKLTEYCTPPFSMKQIIDRYVKAK-GILPEMENRAGPHADNDQVIKELTRMKEETLNLQLNLQRYKGDDLSTVR 124          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: SVP_ARATH (MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.449e-21
Identity = 52/114 (45.61%), Postives = 73/114 (64.04%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQYWG 603
            M R K+++++I+N   RQVTF+KRR GL KKA ELSVLCDA+VALIIFSS GKL+EFCSS SM + LE++   S    + +  S +       ++ ++ ++     H  RQ  G
Sbjct:    1 MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSS-SMKEVLERHNLQSKNLEKLDQPSLELQLVENSDHARMSKEIADKSHRLRQMRG 113          

HSP 2 Score: 30.0314 bits (66), Expect = 1.449e-21
Identity = 16/40 (40.00%), Postives = 25/40 (62.50%), Query Frame = 3
Query:  630 KELEQLERQLGSSLGRVRSLKNRNQLDKLSELQGKEEMLL 749
            +EL+QLE+ L + L RV   K+   + ++SELQ K   L+
Sbjct:  122 EELQQLEKALETGLTRVIETKSDKIMSEISELQKKGMQLM 161          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MADS2_ORYSJ (MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica GN=MADS2 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.023e-21
Identity = 49/72 (68.06%), Postives = 62/72 (86.11%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS-SPSMHQTLEKYE 474
            MGRGK+E+KRIEN  NRQVTF+KRR+G+LKKA E+SVLCDAEV ++IFSS GKLY++CS   S+ + LEKY+
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSPKTSLSRILEKYQ 72          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSJ (MADS-box transcription factor 26 OS=Oryza sativa subsp. japonica GN=MADS26 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.458e-21
Identity = 53/116 (45.69%), Postives = 77/116 (66.38%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQYWGGR 609
            M RGKV+L+RIEN ++RQVTF KRR GLLKKA ELS+LC+A++ +IIFS+ GKLY+  ++ +M + +E+Y+  S    QAN     +     +E + LK++   LQ   R  +G R
Sbjct:    1 MARGKVQLRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYKSAS--GEQAN-ACGDQRMDPKQEAMVLKQEINLLQKGLRYIYGNR 113          

HSP 2 Score: 26.5646 bits (57), Expect = 2.458e-21
Identity = 16/51 (31.37%), Postives = 26/51 (50.98%), Query Frame = 3
Query:  594 ILGGKIWDA*AXKELEQLERQLGSSLGRVRSLKNRNQLDKLSELQGKEEML 746
            I G +  +    +EL  LER L   +  +RS K +  + ++  L+ KE ML
Sbjct:  109 IYGNRANEHMTVEELNALERYLEIWMYNIRSAKMQIMIQEIQALKSKEGML 159          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSI (MADS-box transcription factor 26 OS=Oryza sativa subsp. indica GN=MADS26 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 2.458e-21
Identity = 53/116 (45.69%), Postives = 77/116 (66.38%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQYWGGR 609
            M RGKV+L+RIEN ++RQVTF KRR GLLKKA ELS+LC+A++ +IIFS+ GKLY+  ++ +M + +E+Y+  S    QAN     +     +E + LK++   LQ   R  +G R
Sbjct:    1 MARGKVQLRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYKSAS--GEQAN-ACGDQRMDPKQEAMVLKQEINLLQKGLRYIYGNR 113          

HSP 2 Score: 26.5646 bits (57), Expect = 2.458e-21
Identity = 16/51 (31.37%), Postives = 26/51 (50.98%), Query Frame = 3
Query:  594 ILGGKIWDA*AXKELEQLERQLGSSLGRVRSLKNRNQLDKLSELQGKEEML 746
            I G +  +    +EL  LER L   +  +RS K +  + ++  L+ KE ML
Sbjct:  109 IYGNRANEHMTVEELNALERYLEIWMYNIRSAKMQIMIQEIQALKSKEGML 159          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MAD29_ORYSJ (MADS-box transcription factor 29 OS=Oryza sativa subsp. japonica GN=MADS29 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.688e-21
Identity = 54/123 (43.90%), Postives = 78/123 (63.41%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS-SPSMHQTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQYWGGRFGTLRL 627
            MGRGK+E+KRIEN  NRQVTF+KRR GLLKKA EL+VLCDA V ++IFSS GK++E+CS + S+ + +E Y+  +      + +     Q  + E  +++ + E L    R++ G     L L
Sbjct:    1 MGRGKIEIKRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPTCSLRELIEHYQTVT----NTHFEEINHDQQIFVEMTRMRNEMEKLDGGIRRFTGDDLSNLTL 119          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MAD23_ORYSJ (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.688e-21
Identity = 56/120 (46.67%), Postives = 77/120 (64.17%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQYWGGRFGTL 621
            MGRGK+E+KRI+N  +RQVTF+KRR+GL KKA ELS+LCDAEV L++FSS  +LY+F SS SM   +E+Y        Q  + S+ E +   +E   L+++   LQ   RQ  G +   L
Sbjct:    1 MGRGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASS-SMKSIIERYNETKEDPHQTMNASS-EAKLWQQEAASLRQQLHNLQEYHRQLLGQQLSGL 118          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MAD57_ORYSJ (MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.311e-20
Identity = 54/114 (47.37%), Postives = 74/114 (64.91%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQYWG 603
            MGRGK+ ++RI+N  +RQVTF+KRRNGLLKKA ELS+LCDAEV L++FSS G+LYEF SS +M   +++Y       L  N  +  E +    E   L+++   LQ   +Q  G
Sbjct:    1 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEF-SSTNMKTVIDRYTNAKEELLGGN--ATSEIKIWQREAASLRQQLHNLQESHKQLMG 111          
The following BLAST results are available for this feature:
BLAST of EY728832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
AGL15_BRANA9.081e-2248.09Agamous-like MADS-box protein AGL15 OS=Brassica na... [more]
AGL12_ARATH9.081e-2244.96Agamous-like MADS-box protein AGL12 OS=Arabidopsis... [more]
DEF21_ANTMA1.186e-2145.60MADS-box protein defh21 OS=Antirrhinum majus GN=DE... [more]
SVP_ARATH1.449e-2145.61MADS-box protein SVP OS=Arabidopsis thaliana GN=SV... [more]
MADS2_ORYSJ2.023e-2168.06MADS-box transcription factor 2 OS=Oryza sativa su... [more]
MAD26_ORYSJ2.458e-2145.69MADS-box transcription factor 26 OS=Oryza sativa s... [more]
MAD26_ORYSI2.458e-2145.69MADS-box transcription factor 26 OS=Oryza sativa s... [more]
MAD29_ORYSJ7.688e-2143.90MADS-box transcription factor 29 OS=Oryza sativa s... [more]
MAD23_ORYSJ7.688e-2146.67MADS-box transcription factor 23 OS=Oryza sativa s... [more]
MAD57_ORYSJ1.311e-2047.37MADS-box transcription factor 57 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-009-B11-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728832 ID=EY728832; Name=EY728832; organism=Citrus sinensis; type=EST; length=879bp
CACGCGTCCGGATGAAACAAACCAATTAGCAAAATTAAAGGTACCCAACT
CAGATCAAGTCAATTTAATCTCTCCTTTTAGGAGTGTTCTATACTAAATC
TTAAACCTAGCTATCAAAGCAACCTGATCCCAGCTTCTTGCCCTAAACAA
CAAGATCTGCAGAAACAAAATCTACTAATTTATAATTTATTTTTTAGCCT
AAAGAAACCCAAAAAAAACAAAAAATCATCCAGCTATCCAGCACTTGTAA
GTATATTAATAATGGGAAGGGGAAAAGTAGAGCTGAAGAGGATAGAGAAC
AAAATAAATCGACAGGTGACTTTTGCAAAGAGAAGGAATGGATTGTTAAA
GAAAGCTTATGAGCTCTCAGTTTTGTGTGATGCTGAGGTTGCTCTTATCA
TCTTCTCTAGCCGCGGGAAGCTCTATGAATTCTGCAGCAGCCCTAGTATG
CACCAGACACTTGAGAAGTATGAAAGGTGTAGTTATGGAACACTGCAAGC
AAATCATCAATCAGCCAAAGAGACGCAGGCCAGCTACGAGGAATACATAA
AACTCAAAGAGAAACATGAGGCCCTACAGCACTTGCAAAGACAATATTGG
GGGGGAAGATTTGGGACGCTTAGGCTTANAAGGAGTTGGAACAGCTTGAG
AGACAGCTGGGCAGTTCATTGGGCCGAGTAAGGTCACTCAAGAACCGGAA
TCAGCTGGATAAGCTTTCTGAACTTCAAGGAAAGGAAGAAATGTTGCTGG
GAAGCCCATATATTTAAGTATGAAGTTGGGAGGAATAATGCAGTCGGAAT
CCATCATGGCAGTGAGAACAAATAATAACACAATGTCATCGAGGTCTTGG
CCTACACATGTATGCCTGGTCCCCTGATA
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