EY728832

Overview
NameEY728832
Unique NameEY728832
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MAD22_ORYSJ (MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica GN=MADS22 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.548e-20
Identity = 51/101 (50.50%), Postives = 66/101 (65.35%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEK 564
            M R + E+KRIE+   RQVTF+KRR GL KKA ELSVLCDA+VALI+FSS GKL  F SS SM++ ++KY   S   L    Q + +    + +Y  L E+
Sbjct:    1 MARERREIKRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHFASS-SMNEIIDKYNTHS-NNLGKAEQPSLDLNLEHSKYAHLNEQ 99          

HSP 2 Score: 32.7278 bits (73), Expect = 1.548e-20
Identity = 16/38 (42.11%), Postives = 25/38 (65.79%), Query Frame = 3
Query:  633 ELEQLERQLGSSLGRVRSLKNRNQLDKLSELQGKEEML 746
            EL+QLE+ L + L RV   K++  ++++SELQ K   L
Sbjct:  122 ELQQLEKNLEAGLHRVMLTKDQQFMEQISELQRKSSQL 159          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MAD31_ORYSJ (MADS-box transcription factor 31 OS=Oryza sativa subsp. japonica GN=MADS31 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.237e-20
Identity = 52/123 (42.28%), Postives = 77/123 (62.60%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSP-SMHQTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQYWGGRFGTLRL 627
            MGRG+VELK+IEN  NRQVTF+KRR GLLKKA EL++LCDA++ +I+FS  GK+YE+ S P  +    ++Y +          +     Q   +E  ++K+++  L+ + RQY G    +L L
Sbjct:    1 MGRGRVELKKIENPTNRQVTFSKRRMGLLKKANELAILCDAQIGVIVFSGTGKMYEYSSPPWRIANIFDRYLKAP----STRFEEMDVQQRIIQEMTRMKDENNRLRIIMRQYMGDDLASLTL 119          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: AGL21_ARATH (Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.815e-20
Identity = 59/131 (45.04%), Postives = 82/131 (62.60%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQYWGGRFGTLRLXRSWNSLRD 654
            MGRGK+ ++RI++  +RQVTF+KRR GL+KKA EL++LCDAEV LIIFSS GKLY+F SS SM   +++Y +      Q  +  A E +    E   L+++  ALQ   RQ  G +   L +    NSL +
Sbjct:    1 MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASS-SMKSVIDRYNKSKIEQQQLLN-PASEVKFWQREAAVLRQELHALQENHRQMMGEQLNGLSV-NELNSLEN 128          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MADS4_ORYSJ (MADS-box transcription factor 4 OS=Oryza sativa subsp. japonica GN=MADS4 PE=1 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 1.110e-19
Identity = 62/154 (40.26%), Postives = 86/154 (55.84%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS------PSMHQTLEKYERCSYGTL-QANHQSAKETQASYEEYIKLKEKHEALQHLQRQYWGGRFGTLR----------LXRSWNSLRDSWAVHW 672
            MGRGK+E+KRIEN  NRQVTF+KRR G+LKKA E+ VLCDAEV ++IFSS GKL ++C+       P + + LEKY+  S   L    H+S         E  ++K++++ +Q   R   G    +L+          L     +LRD    HW
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRAGILKKAREIGVLCDAEVGVVIFSSAGKLSDYCTPKTTSVFPPLSRILEKYQTNSGKILWDEKHKSLS------AEIDRVKKENDNMQIELRHMKGEDLNSLQPKELIAIEEALNNGQANLRDKMMDHW 148          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: FLC_ARATH (MADS-box protein FLOWERING LOCUS C OS=Arabidopsis thaliana GN=FLC PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.110e-19
Identity = 51/99 (51.52%), Postives = 72/99 (72.73%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSYGTLQA-NHQSAKETQASYEEYIKL 555
            MGR K+E+KRIENK +RQVTF+KRRNGL++KA +LSVLCDA VAL++ S+ GKLY F S  ++ + L++Y +     L+A +HQS      S+ E ++L
Sbjct:    1 MGRKKLEIKRIENKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASGKLYSFSSGDNLVKILDRYGKQHADDLKALDHQSKALNYGSHYELLEL 99          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MADS2_PETHY (Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.450e-19
Identity = 53/122 (43.44%), Postives = 82/122 (67.21%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS-SPSMHQTLEKYERCSYGTL-QANHQSAKETQASYEEYIKLKEKHEALQHLQRQYWGGRFGTL 621
            MGRGK+E+KRIEN  NRQVT++KRRNG++KKA E++VLCDA+V+LIIF + GK++E+CS S ++   L+ Y++ S   L  A H++         E  ++K++++ +Q   R   G    +L
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSGKMHEYCSPSTTLPDMLDGYQKTSGRRLWDAKHENLS------NEIDRIKKENDNMQVKLRHLKGEDINSL 116          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MAD25_ORYSJ (MADS-box transcription factor 25 OS=Oryza sativa subsp. japonica GN=MADS25 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.450e-19
Identity = 52/114 (45.61%), Postives = 75/114 (65.79%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQYWG 603
            MGRGK+ +KRI+N +NRQVTF+KRR GL+KKA EL++LCDA+V LI+FS  G+LY+F SS SM   +E+Y+       +  +  + E +    E   L+++ + L H  RQ  G
Sbjct:    1 MGRGKIAIKRIDNTMNRQVTFSKRRGGLMKKARELAILCDADVGLIVFSCTGRLYDF-SSSSMKSIIERYQEAGEEHCRLLNPMS-EAKFWQREVTTLRQQVQNLHHNNRQLLG 112          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: GLOB_ANTMA (Floral homeotic protein GLOBOSA OS=Antirrhinum majus GN=GLO PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.450e-19
Identity = 46/75 (61.33%), Postives = 62/75 (82.67%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS-SPSMHQTLEKYERCS 483
            MGRGK+E+KRIEN  NRQVT++KRRNG++KKA E+SVLCDA V++IIF+S GK++EFCS S ++   L+ Y + S
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSPSTTLVDMLDHYHKLS 75          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: PIST_ARATH (Floral homeotic protein PISTILLATA OS=Arabidopsis thaliana GN=PI PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.473e-19
Identity = 56/124 (45.16%), Postives = 82/124 (66.13%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF-CSSPSMHQTLEKYERCSYGTL-QANHQSAKETQASYEEYIKLKEKHEALQHLQRQYWGGRFGTLRL 627
            MGRGK+E+KRIEN  NR VTF+KRRNGL+KKA E++VLCDA+VALIIF+S GK+ ++ C S  +   L++Y++ S   L  A H++         E  ++K+++++LQ   R   G    +L L
Sbjct:    1 MGRGKIEIKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCPSMDLGAMLDQYQKLSGKKLWDAKHENLS------NEIDRIKKENDSLQLELRHLKGEDIQSLNL 118          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.473e-19
Identity = 54/114 (47.37%), Postives = 74/114 (64.91%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQYWG 603
            MGRGK+ ++RI+N  +RQVTF+KRRNG+ KKA EL++LCDAEV L+IFSS G+LYE+ SS SM   +++Y + S    QA      E +    E   L+++   LQ   RQ  G
Sbjct:    1 MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEY-SSTSMKSVIDRYGK-SKDEQQAVANPNSELKFWQREAASLRQQLHNLQENHRQLMG 112          
The following BLAST results are available for this feature:
BLAST of EY728832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
MAD22_ORYSJ1.548e-2050.50MADS-box transcription factor 22 OS=Oryza sativa s... [more]
MAD31_ORYSJ2.237e-2042.28MADS-box transcription factor 31 OS=Oryza sativa s... [more]
AGL21_ARATH3.815e-2045.04Agamous-like MADS-box protein AGL21 OS=Arabidopsis... [more]
MADS4_ORYSJ1.110e-1940.26MADS-box transcription factor 4 OS=Oryza sativa su... [more]
FLC_ARATH1.110e-1951.52MADS-box protein FLOWERING LOCUS C OS=Arabidopsis ... [more]
MADS2_PETHY1.450e-1943.44Floral homeotic protein PMADS 2 OS=Petunia hybrida... [more]
MAD25_ORYSJ1.450e-1945.61MADS-box transcription factor 25 OS=Oryza sativa s... [more]
GLOB_ANTMA1.450e-1961.33Floral homeotic protein GLOBOSA OS=Antirrhinum maj... [more]
PIST_ARATH2.473e-1945.16Floral homeotic protein PISTILLATA OS=Arabidopsis ... [more]
MAD27_ORYSJ2.473e-1947.37MADS-box transcription factor 27 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-009-B11-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728832 ID=EY728832; Name=EY728832; organism=Citrus sinensis; type=EST; length=879bp
CACGCGTCCGGATGAAACAAACCAATTAGCAAAATTAAAGGTACCCAACT
CAGATCAAGTCAATTTAATCTCTCCTTTTAGGAGTGTTCTATACTAAATC
TTAAACCTAGCTATCAAAGCAACCTGATCCCAGCTTCTTGCCCTAAACAA
CAAGATCTGCAGAAACAAAATCTACTAATTTATAATTTATTTTTTAGCCT
AAAGAAACCCAAAAAAAACAAAAAATCATCCAGCTATCCAGCACTTGTAA
GTATATTAATAATGGGAAGGGGAAAAGTAGAGCTGAAGAGGATAGAGAAC
AAAATAAATCGACAGGTGACTTTTGCAAAGAGAAGGAATGGATTGTTAAA
GAAAGCTTATGAGCTCTCAGTTTTGTGTGATGCTGAGGTTGCTCTTATCA
TCTTCTCTAGCCGCGGGAAGCTCTATGAATTCTGCAGCAGCCCTAGTATG
CACCAGACACTTGAGAAGTATGAAAGGTGTAGTTATGGAACACTGCAAGC
AAATCATCAATCAGCCAAAGAGACGCAGGCCAGCTACGAGGAATACATAA
AACTCAAAGAGAAACATGAGGCCCTACAGCACTTGCAAAGACAATATTGG
GGGGGAAGATTTGGGACGCTTAGGCTTANAAGGAGTTGGAACAGCTTGAG
AGACAGCTGGGCAGTTCATTGGGCCGAGTAAGGTCACTCAAGAACCGGAA
TCAGCTGGATAAGCTTTCTGAACTTCAAGGAAAGGAAGAAATGTTGCTGG
GAAGCCCATATATTTAAGTATGAAGTTGGGAGGAATAATGCAGTCGGAAT
CCATCATGGCAGTGAGAACAAATAATAACACAATGTCATCGAGGTCTTGG
CCTACACATGTATGCCTGGTCCCCTGATA
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