EY728832

Overview
NameEY728832
Unique NameEY728832
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MAD16_ORYSJ (MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.473e-19
Identity = 53/122 (43.44%), Postives = 75/122 (61.48%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS-SPSMHQTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQYWGGRFGTLR 624
            MGRGK+E+KRIEN  NRQVT++KRR G++KKA EL+VLCDA+VA+I+FSS GK +EFCS S  +    ++Y++    +L        +   S+ + I    + E  Q +     G  F  LR
Sbjct:    1 MGRGKIEIKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSPSTDIKGIFDRYQQAIGTSLWIEQYENMQRTLSHLKDINRNLRTEIRQRMGEDLDGLEFDELR 122          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: FBP1_PETHY (Floral homeotic protein FBP1 OS=Petunia hybrida GN=FBP1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.473e-19
Identity = 53/107 (49.53%), Postives = 76/107 (71.03%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCS-YGTLQANHQSAKETQASYEEYIKLKEKHEALQ 579
            MGRGK+E+KRIEN  NRQVT++KRRNG+LKKA E+SVLCDA V++IIF+S GK++EF SS S+   L++Y + +    L A H++         E  K+K+ ++ +Q
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEF-SSTSLVDILDQYHKLTGRRLLDAKHENLD------NEINKVKKDNDNMQ 100          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: GLOB_TOBAC (Floral homeotic protein GLOBOSA OS=Nicotiana tabacum GN=GLO PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.230e-19
Identity = 53/107 (49.53%), Postives = 76/107 (71.03%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSYGTL-QANHQSAKETQASYEEYIKLKEKHEALQ 579
            MGRGK+E+KRIEN  NRQVT++KRRNG+LKKA E+SVLCDA V++IIF+S GK++EF SS S+   L++Y + +   L  A H++         E  K+K+ ++ +Q
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEF-SSTSLVDILDQYHKLTGRRLWDAKHENLD------NEINKVKKDNDNMQ 100          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: TT16_ARATH (Protein TRANSPARENT TESTA 16 OS=Arabidopsis thaliana GN=TT16 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.571e-18
Identity = 46/94 (48.94%), Postives = 64/94 (68.09%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPS-MHQTLEKYERCSYGTLQANHQSAKETQASYE 540
            MGRGK+E+K+IEN+  RQVTF+KRR GL+KK  ELS+LCDA + LI+FS+ GKL EFCS  + M Q +++Y   +   L  +H   ++     E
Sbjct:    1 MGRGKIEIKKIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCSEQNRMPQLIDRYLHTNGLRLPDHHDDQEQLHHEME 94          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MADS1_PETHY (Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.571e-18
Identity = 54/115 (46.96%), Postives = 75/115 (65.22%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS-SPSMHQTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQYWG 603
            M RGK+++KRIEN+ NRQVT++KRRNGL KKA EL+VLCDA+V++I+ SS GKL+EF S S +  Q  + Y++     L  +H    +     E+  KLKE +  L+   RQ  G
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISPSITTKQLFDLYQKTVGVDLWNSHYEKMQ-----EQLRKLKEVNRNLRKEIRQRMG 110          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: DEFA_ANTMA (Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.571e-18
Identity = 54/132 (40.91%), Postives = 80/132 (60.61%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS-SPSMHQTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQYWGGRFGTLRLXRSWNSLRD 654
            M RGK+++KRIEN+ NRQVT++KRRNGL KKA+ELSVLCDA+V++I+ SS  KL+E+ S + +  Q  ++Y++     L ++H    +     E   KL E +  L+   RQ  G     L   +  N + D
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISPTTATKQLFDQYQKAVGVDLWSSHYEKMQ-----EHLKKLNEVNRNLRREIRQRMGESLNDLGYEQIVNLIED 127          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: JOIN_SOLLC (MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.664e-18
Identity = 53/114 (46.49%), Postives = 71/114 (62.28%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQYWG 603
            M R K+++K+I+N   RQVTF+KRR GL KKA ELSVLCDA+VALIIFSS GKL+++ SS SM Q LE+ +  S    + +  S +        Y +L ++     H  RQ  G
Sbjct:    1 MAREKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDY-SSSSMKQILERRDLHSKNLEKLDQPSLELQLVENSNYSRLSKEISEKSHRLRQMRG 113          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: AGL31_ARATH (Agamous-like MADS-box protein AGL31 OS=Arabidopsis thaliana GN=AGL31 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 6.091e-18
Identity = 47/106 (44.34%), Postives = 70/106 (66.04%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQ 579
            MGR KVE+KRIENK +RQVTF+KRRNGL++KA +LS+LC++ +A+++ S  GKLY+  S  +M + +++YE        A+   A +       Y+ LKE  E +Q
Sbjct:    1 MGRKKVEIKRIENKSSRQVTFSKRRNGLIEKARQLSILCESSIAVLVVSGSGKLYKSASGDNMSKIIDRYE-----IHHADELEALDLAEKTRNYLPLKELLEIVQ 101          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MAD30_ORYSJ (MADS-box transcription factor 30 OS=Oryza sativa subsp. japonica GN=MADS30 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.039e-17
Identity = 48/115 (41.74%), Postives = 73/115 (63.48%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSYGTLQANHQSA-KETQASYEEYIKLKEKHEALQHLQRQYWG 603
            MG+GK+E+KRIE+   RQVTF+KRR G LKKA EL+VLCDA+V +++FS +GKL++FCS P +   +E + R    T     Q   ++ +    E  +L+ + + L+   R+  G
Sbjct:    1 MGQGKIEMKRIEDATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCSPPVI--LMELFHRYEITTRNTRLQETNRDDEQMVMEITRLRNEIDQLEASLRRQTG 113          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: AGL17_ARATH (Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana GN=AGL17 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.315e-17
Identity = 51/114 (44.74%), Postives = 73/114 (64.04%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQYWG 603
            MGRGK+ +++I++  +RQVTF+KRR GL+KKA EL++LCDAEV LIIFS+  KLY+F SS S+  T+E++        Q     A E +    E   L+++  +LQ   RQ  G
Sbjct:    1 MGRGKIVIQKIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSNTDKLYDFASS-SVKSTIERFNTAKMEE-QELMNPASEVKFWQREAETLRQELHSLQENYRQLTG 112          
The following BLAST results are available for this feature:
BLAST of EY728832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
MAD16_ORYSJ2.473e-1943.44MADS-box transcription factor 16 OS=Oryza sativa s... [more]
FBP1_PETHY2.473e-1949.53Floral homeotic protein FBP1 OS=Petunia hybrida GN... [more]
GLOB_TOBAC3.230e-1949.53Floral homeotic protein GLOBOSA OS=Nicotiana tabac... [more]
TT16_ARATH3.571e-1848.94Protein TRANSPARENT TESTA 16 OS=Arabidopsis thalia... [more]
MADS1_PETHY3.571e-1846.96Floral homeotic protein PMADS 1 OS=Petunia hybrida... [more]
DEFA_ANTMA3.571e-1840.91Floral homeotic protein DEFICIENS OS=Antirrhinum m... [more]
JOIN_SOLLC4.664e-1846.49MADS-box protein JOINTLESS OS=Solanum lycopersicum... [more]
AGL31_ARATH6.091e-1844.34Agamous-like MADS-box protein AGL31 OS=Arabidopsis... [more]
MAD30_ORYSJ1.039e-1741.74MADS-box transcription factor 30 OS=Oryza sativa s... [more]
AGL17_ARATH2.315e-1744.74Agamous-like MADS-box protein AGL17 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-009-B11-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728832 ID=EY728832; Name=EY728832; organism=Citrus sinensis; type=EST; length=879bp
CACGCGTCCGGATGAAACAAACCAATTAGCAAAATTAAAGGTACCCAACT
CAGATCAAGTCAATTTAATCTCTCCTTTTAGGAGTGTTCTATACTAAATC
TTAAACCTAGCTATCAAAGCAACCTGATCCCAGCTTCTTGCCCTAAACAA
CAAGATCTGCAGAAACAAAATCTACTAATTTATAATTTATTTTTTAGCCT
AAAGAAACCCAAAAAAAACAAAAAATCATCCAGCTATCCAGCACTTGTAA
GTATATTAATAATGGGAAGGGGAAAAGTAGAGCTGAAGAGGATAGAGAAC
AAAATAAATCGACAGGTGACTTTTGCAAAGAGAAGGAATGGATTGTTAAA
GAAAGCTTATGAGCTCTCAGTTTTGTGTGATGCTGAGGTTGCTCTTATCA
TCTTCTCTAGCCGCGGGAAGCTCTATGAATTCTGCAGCAGCCCTAGTATG
CACCAGACACTTGAGAAGTATGAAAGGTGTAGTTATGGAACACTGCAAGC
AAATCATCAATCAGCCAAAGAGACGCAGGCCAGCTACGAGGAATACATAA
AACTCAAAGAGAAACATGAGGCCCTACAGCACTTGCAAAGACAATATTGG
GGGGGAAGATTTGGGACGCTTAGGCTTANAAGGAGTTGGAACAGCTTGAG
AGACAGCTGGGCAGTTCATTGGGCCGAGTAAGGTCACTCAAGAACCGGAA
TCAGCTGGATAAGCTTTCTGAACTTCAAGGAAAGGAAGAAATGTTGCTGG
GAAGCCCATATATTTAAGTATGAAGTTGGGAGGAATAATGCAGTCGGAAT
CCATCATGGCAGTGAGAACAAATAATAACACAATGTCATCGAGGTCTTGG
CCTACACATGTATGCCTGGTCCCCTGATA
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