EY728832

Overview
NameEY728832
Unique NameEY728832
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: AP3_ARATH (Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.735e-17
Identity = 47/106 (44.34%), Postives = 68/106 (64.15%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPS-------MHQTLEKYE--RCSYGTLQANHQSAKETQASYEEYIK 552
            M RGK+++KRIEN+ NRQVT++KRRNGL KKA+EL+VLCDA V++I+FSS  KL+E+ S  +       ++QT+   +     Y  +Q   +   ET  +    IK
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISPNTTTKEIVDLYQTISDVDVWATQYERMQETKRKLLETNRNLRTQIK 106          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MAD32_ORYSJ (MADS-box transcription factor 32 OS=Oryza sativa subsp. japonica GN=MADS32 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.796e-17
Identity = 44/91 (48.35%), Postives = 64/91 (70.33%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS--PSMHQTLEKYERCSYGTLQANHQSAKETQ 528
            MGRG+ E+KRIEN   RQ TF KRR+GL KKA EL+VLCDA++ L++FS+ GKLY F S   PS+ + +E+YE  ++  + A+ +  +  +
Sbjct:    1 MGRGRSEIKRIENPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSASGKLYHFLSPTVPSVREFVERYEATTHTKVWADIRQERRAE 91          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: CMB2_DIACA (MADS-box protein CMB2 OS=Dianthus caryophyllus GN=CMB2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.500e-16
Identity = 49/123 (39.84%), Postives = 79/123 (64.23%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS-SPSMHQTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQYWGGRFGTLRL 627
            MGRGK+E+++IENK NRQVTF+KRRNG++KKA EL+VLCDA+V+L++ SS  KL+ + S   S+ +  ++Y++     ++      K+ +   E++ K+ E +  L+    +  GG    L L
Sbjct:    1 MGRGKLEIRKIENKTNRQVTFSKRRNGIMKKAQELTVLCDAKVSLLMISSTHKLHHYLSPGVSLKKMYDEYQK-----IEGVDLWRKQWERMQEQHRKVLELNSLLRREISRRMGGDLEGLTL 118          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MEF2_DROME (Myocyte-specific enhancer factor 2 OS=Drosophila melanogaster GN=Mef2 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.270e-15
Identity = 42/70 (60.00%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKY 471
            MGR K+++ RI ++ NRQVTF KR+ G++KKAYELSVLCD E+ALIIFSS  KLY++ S+  M + L KY
Sbjct:    1 MGRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQYAST-DMDRVLLKY 69          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: SRFC_DICDI (Serum factor response C OS=Dictyostelium discoideum GN=srfC PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.695e-15
Identity = 38/72 (52.78%), Postives = 55/72 (76.39%), Query Frame = 1
Query:  256 LIMGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKY 471
            + MGR K+ +++I N+ NRQ TF KR+NGL+KKA ELS+LCD E+A+I+FSS  KL+++ SS  M + L +Y
Sbjct:    1 MYMGRNKITIEKISNERNRQATFTKRKNGLIKKAMELSILCDCEIAMIVFSSNNKLFQY-SSRDMDKLLIRY 71          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MEF2C_PONAB (Myocyte-specific enhancer factor 2C OS=Pongo abelii GN=MEF2C PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.695e-15
Identity = 41/70 (58.57%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKY 471
            MGR K+++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF+S  KL+++ S+  M + L KY
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYAST-DMDKVLLKY 69          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MEF2C_PIG (Myocyte-specific enhancer factor 2C OS=Sus scrofa GN=MEF2C PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.695e-15
Identity = 41/70 (58.57%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKY 471
            MGR K+++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF+S  KL+++ S+  M + L KY
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYAST-DMDKVLLKY 69          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MEF2C_MOUSE (Myocyte-specific enhancer factor 2C OS=Mus musculus GN=Mef2c PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.695e-15
Identity = 41/70 (58.57%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKY 471
            MGR K+++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF+S  KL+++ S+  M + L KY
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYAST-DMDKVLLKY 69          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MEF2C_HUMAN (Myocyte-specific enhancer factor 2C OS=Homo sapiens GN=MEF2C PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.695e-15
Identity = 41/70 (58.57%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKY 471
            MGR K+++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF+S  KL+++ S+  M + L KY
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYAST-DMDKVLLKY 69          
BLAST of EY728832 vs. ExPASy Swiss-Prot
Match: MEF2C_BOVIN (Myocyte-specific enhancer factor 2C OS=Bos taurus GN=MEF2C PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.695e-15
Identity = 41/70 (58.57%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  262 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHQTLEKY 471
            MGR K+++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF+S  KL+++ S+  M + L KY
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYAST-DMDKVLLKY 69          
The following BLAST results are available for this feature:
BLAST of EY728832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
AP3_ARATH6.735e-1744.34Floral homeotic protein APETALA 3 OS=Arabidopsis t... [more]
MAD32_ORYSJ8.796e-1748.35MADS-box transcription factor 32 OS=Oryza sativa s... [more]
CMB2_DIACA1.500e-1639.84MADS-box protein CMB2 OS=Dianthus caryophyllus GN=... [more]
MEF2_DROME1.270e-1560.00Myocyte-specific enhancer factor 2 OS=Drosophila m... [more]
SRFC_DICDI3.695e-1552.78Serum factor response C OS=Dictyostelium discoideu... [more]
MEF2C_PONAB3.695e-1558.57Myocyte-specific enhancer factor 2C OS=Pongo abeli... [more]
MEF2C_PIG3.695e-1558.57Myocyte-specific enhancer factor 2C OS=Sus scrofa ... [more]
MEF2C_MOUSE3.695e-1558.57Myocyte-specific enhancer factor 2C OS=Mus musculu... [more]
MEF2C_HUMAN3.695e-1558.57Myocyte-specific enhancer factor 2C OS=Homo sapien... [more]
MEF2C_BOVIN3.695e-1558.57Myocyte-specific enhancer factor 2C OS=Bos taurus ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-009-B11-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728832 ID=EY728832; Name=EY728832; organism=Citrus sinensis; type=EST; length=879bp
CACGCGTCCGGATGAAACAAACCAATTAGCAAAATTAAAGGTACCCAACT
CAGATCAAGTCAATTTAATCTCTCCTTTTAGGAGTGTTCTATACTAAATC
TTAAACCTAGCTATCAAAGCAACCTGATCCCAGCTTCTTGCCCTAAACAA
CAAGATCTGCAGAAACAAAATCTACTAATTTATAATTTATTTTTTAGCCT
AAAGAAACCCAAAAAAAACAAAAAATCATCCAGCTATCCAGCACTTGTAA
GTATATTAATAATGGGAAGGGGAAAAGTAGAGCTGAAGAGGATAGAGAAC
AAAATAAATCGACAGGTGACTTTTGCAAAGAGAAGGAATGGATTGTTAAA
GAAAGCTTATGAGCTCTCAGTTTTGTGTGATGCTGAGGTTGCTCTTATCA
TCTTCTCTAGCCGCGGGAAGCTCTATGAATTCTGCAGCAGCCCTAGTATG
CACCAGACACTTGAGAAGTATGAAAGGTGTAGTTATGGAACACTGCAAGC
AAATCATCAATCAGCCAAAGAGACGCAGGCCAGCTACGAGGAATACATAA
AACTCAAAGAGAAACATGAGGCCCTACAGCACTTGCAAAGACAATATTGG
GGGGGAAGATTTGGGACGCTTAGGCTTANAAGGAGTTGGAACAGCTTGAG
AGACAGCTGGGCAGTTCATTGGGCCGAGTAAGGTCACTCAAGAACCGGAA
TCAGCTGGATAAGCTTTCTGAACTTCAAGGAAAGGAAGAAATGTTGCTGG
GAAGCCCATATATTTAAGTATGAAGTTGGGAGGAATAATGCAGTCGGAAT
CCATCATGGCAGTGAGAACAAATAATAACACAATGTCATCGAGGTCTTGG
CCTACACATGTATGCCTGGTCCCCTGATA
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