EY728818

Overview
NameEY728818
Unique NameEY728818
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728818 vs. ExPASy Swiss-Prot
Match: TDH_BURP8 (L-threonine 3-dehydrogenase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=tdh PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.894e-28
Identity = 78/220 (35.45%), Postives = 117/220 (53.18%), Query Frame = 1
Query:   25 ADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGAGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKEIGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGLXQTMFTALGATCAGGKVCLVG 681
            A   +  PM +GHE  G I ++G EV+    GDRV+ E  I+C  C +C+ GR +LC            G+ A  +V PA   FK+P  +S +  A+ +P     H     N+  E +VLI GAGPIG++ +  A+  GA  +VI DV+DYRL +A+++GA   V VS   L+D+  ++      M  G DV  + +G+     + L A   GGK+ L+G
Sbjct:   51 AQKTIPVPMHVGHEYVGEIVEMGQEVRGFSIGDRVSGEGHITCGFCRNCRAGRRHLCRNTVGVGVNR-EGAFAEYLVIPAFNAFKIPPEISDDLAAIFDPFGNATHTALSFNLVGE-DVLITGAGPIGIMAVAIAKHVGARNVVITDVNDYRLELARKMGATRAVNVSRETLRDVMRDLH-----MTEGFDVGLEMSGVPSAFTSMLEAMNHGGKIALLG 263          
BLAST of EY728818 vs. ExPASy Swiss-Prot
Match: TDH_CHRVO (L-threonine 3-dehydrogenase OS=Chromobacterium violaceum GN=tdh PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.698e-28
Identity = 78/213 (36.62%), Postives = 116/213 (54.46%), Query Frame = 1
Query:   46 PMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGAGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKEIGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGLXQTMFTALGATCAGGKVCLVG 681
            PM +GHE  GV+  +GSEV+    G RV+ E  I+C  C +C+ GR +LC            G+ A  +V PA   F +PD++S +  ++ +P    VH     N+  E +VLI GAGPIG++ +  A+  GA  +VI DV+DYRL +AK++GA   V V+  +L+ + +E+      M  G DV  + +G  Q     L     GGKV L+G
Sbjct:   58 PMHVGHEYVGVVAGMGSEVQGFKIGQRVSGEGHITCGYCRNCRAGRRHLCRNTTGVGVNR-EGAFAEYLVIPAFNAFPIPDDISDDLASIFDPFGNAVHTALSFNLVGE-DVLITGAGPIGIMAVAIAKHVGARHVVITDVNDYRLELAKKMGATRAVNVAREDLKAVMQELH-----MSEGFDVGLEMSGNPQAFRQMLETMNHGGKVALLG 263          
BLAST of EY728818 vs. ExPASy Swiss-Prot
Match: TDH_SHEFN (L-threonine 3-dehydrogenase OS=Shewanella frigidimarina (strain NCIMB 400) GN=tdh PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.005e-27
Identity = 74/213 (34.74%), Postives = 114/213 (53.52%), Query Frame = 1
Query:   46 PMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGAGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKEIGADNIVKVST-NLQDIAEEVEKIQKAMGTGIDVSFDCAGLXQTMFTALGATCAGGKVCLVG 681
            PM+ GHE  G +  VG EV+    GDRV+ E  I+C  C +C+ GR +LC            G+ A  +V PA   FK+P ++  +  A+ +P    VH     ++  E +VLI GAGPIG++     +  GA  +VI DV++YRL +A+++GA   V V+T NL+D+ +E+      M  G DV  + +G+       L     GGK+ ++G
Sbjct:   58 PMIAGHEYVGEVVDVGQEVRGFSIGDRVSGEGHITCGHCRNCRAGRTHLCRNTSGVGVNR-DGAFAEYLVLPAFNAFKIPADIPDDLAAIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVCKHVGARHVVITDVNEYRLDLARKMGATRAVNVATENLKDVMKEL-----GMTEGFDVGLEMSGVPSAFHAMLDTMNHGGKIAMLG 263          
BLAST of EY728818 vs. ExPASy Swiss-Prot
Match: TDH_PHOPR (L-threonine 3-dehydrogenase OS=Photobacterium profundum GN=tdh PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.313e-27
Identity = 75/213 (35.21%), Postives = 114/213 (53.52%), Query Frame = 1
Query:   46 PMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGAGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKEIGADNIVKVST-NLQDIAEEVEKIQKAMGTGIDVSFDCAGLXQTMFTALGATCAGGKVCLVG 681
            PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+GGR +LC            G+ A  +V PA   FK+P  +S +  ++ +P    VH     ++  E +VLI GAGPIG++    A+  GA  +VI DV++YRL +A+++G    V V+   L+D+  E+      M  G DV  + +G+       L +   GGKV L+G
Sbjct:   60 PMVVGHEYVGEVVGIGQEVRGFTIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNR-DGAFAEFLVIPAFNAFKIPAGISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLDLARKMGVTRAVNVANEKLEDVMSEL-----GMTEGFDVGLEMSGVPSAFNGMLASMNHGGKVALLG 265          
BLAST of EY728818 vs. ExPASy Swiss-Prot
Match: TDH_IDILO (L-threonine 3-dehydrogenase OS=Idiomarina loihiensis GN=tdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.313e-27
Identity = 76/213 (35.68%), Postives = 113/213 (53.05%), Query Frame = 1
Query:   46 PMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGAGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKEIGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGLXQTMFTALGATCAGGKVCLVG 681
            PMV+GHE  G +  +G  V+    GDRV+ E  I+C  C +C+ GR +LC    +       G+ A  +  PA+  FKLPD+V+ E  A+ +P    VH     ++  E +VLI GAGPIG++    AR  GA  +VI DV++YRL +A+++G    V VS   L D+  E+      M  G DV  + +G+       L     GGK+ ++G
Sbjct:   58 PMVVGHEYVGEVAAMGDGVRGFEIGDRVSGEGHITCGHCRNCRAGRRHLCRNT-YGVGVNRPGAFAEYLALPAENAFKLPDDVTDEMAAVFDPFGNAVHTALAFDLVGE-DVLITGAGPIGIMAAAVARHVGARHVVITDVNEYRLDLARKMGVTRAVDVSKEKLSDVMTEL-----GMKEGFDVGLEMSGVPSAFSQMLETMNHGGKIAMLG 263          
BLAST of EY728818 vs. ExPASy Swiss-Prot
Match: TDH_AERHH (L-threonine 3-dehydrogenase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=tdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.313e-27
Identity = 77/214 (35.98%), Postives = 113/214 (52.80%), Query Frame = 1
Query:   46 PMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGAGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKEIGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGLXQTMFTALGATCAGGKVCLVG 681
            PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+ GR +LC   +      P  G+ A  +V PA   FKLPDNV  E  A+ +P    VH     ++  E +VLI GAGPIG++     R  GA  +VI DV++YRL +A+++GA   V V+   L  +  E+      M  G DV  + +G+       +     GGK+ ++G
Sbjct:   58 PMVVGHEYVGEVVAIGQEVRGFAVGDRVSGEGHITCGHCRNCRAGRTHLCRNTIGVGVNRP--GAFAEYLVIPAFNAFKLPDNVPDELAAIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVCRHVGARHVVITDVNEYRLELARKMGATRAVNVTKEQLSGVMSEL-----GMTEGFDVGLEMSGVPSAFQDMIDKMNHGGKIAMLG 263          
BLAST of EY728818 vs. ExPASy Swiss-Prot
Match: TDH_SHIDS (L-threonine 3-dehydrogenase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=tdh PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.240e-27
Identity = 75/214 (35.05%), Postives = 114/214 (53.27%), Query Frame = 1
Query:   46 PMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGAGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKEIGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGLXQTMFTALGATCAGGKVCLVG 681
            PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC   +      P  G  A  +V PA   FK+P N+S +  ++ +P    VH     ++  E +VL+ GAGPIG++    A+  GA  +VI DV++YRL +A+++G      V+  NL D+  E+      M  G DV  + +G      T L     GG++ ++G
Sbjct:   58 PMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRP--GCFAEYLVIPAFNAFKIPGNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEYRLELARKMGITRAANVAKENLNDVMAEL-----GMTEGFDVGLEMSGAPPAFRTMLDTMNHGGRIAMLG 263          
BLAST of EY728818 vs. ExPASy Swiss-Prot
Match: TDH_BURVG (L-threonine 3-dehydrogenase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=tdh PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.240e-27
Identity = 76/220 (34.55%), Postives = 117/220 (53.18%), Query Frame = 1
Query:   25 ADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGAGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKEIGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGLXQTMFTALGATCAGGKVCLVG 681
            A   +  PM +GHE  G I ++G EV+    GDRV+ E  I+C  C +C+ GR +LC            G+ A  +  PA   FK+P  +S +  ++ +P     H     N+  E +VLI GAGPIG++ +  A+  GA  +VI D++DYRL +A+++GA   V V+  +L+D+  E+      M  G DV  + +G+     + L A   GGKV L+G
Sbjct:   51 AQKTIPVPMHVGHEYVGEIVEMGQEVRGFAIGDRVSGEGHITCGFCRNCRAGRRHLCRNTVGVGVNR-EGAFAEYLAIPAFNAFKIPPEISDDLASIFDPFGNATHTALSFNLVGE-DVLITGAGPIGIMAVAIAKHVGARNVVITDINDYRLELARKMGATRAVNVARESLRDVMAELR-----MTEGFDVGLEMSGVPSAFTSLLEAMNHGGKVALLG 263          
BLAST of EY728818 vs. ExPASy Swiss-Prot
Match: TDH_VIBPA (L-threonine 3-dehydrogenase OS=Vibrio parahaemolyticus GN=tdh PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.925e-27
Identity = 74/213 (34.74%), Postives = 114/213 (53.52%), Query Frame = 1
Query:   46 PMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGAGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKEIGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGLXQTMFTALGATCAGGKVCLVG 681
            PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+GGR +LC            G+ A  +V PA   FK+PD +S +  ++ +P    VH     ++  E +VLI GAGPIG++    A+  GA  +VI DV++YRL +A+++G    V V+   L+D+  E+      M  G DV  + +G      + L     GG++ L+G
Sbjct:   60 PMVVGHEYVGEVVAIGQEVRGFEIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNR-EGAFAEYLVIPAFNAFKIPDEISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGVTRAVNVAEEKLEDVMAEL-----GMTEGFDVGLEMSGNPAAFNSMLTTMNHGGRIALLG 265          
BLAST of EY728818 vs. ExPASy Swiss-Prot
Match: TDH_CITK8 (L-threonine 3-dehydrogenase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=tdh PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.925e-27
Identity = 75/214 (35.05%), Postives = 115/214 (53.74%), Query Frame = 1
Query:   46 PMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGAGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKEIGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGLXQTMFTALGATCAGGKVCLVG 681
            PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC   +      P  G  A  +V PA   FK+PDN+S +  ++ +P    VH     ++  E +VL+ GAGPIG++    A+  GA  +VI DV++YRL +A+++G  + V V+  NL D+   +      M  G DV  + +G        L     GG++ ++G
Sbjct:   58 PMVVGHEYVGEVVGIGQEVKGFRIGDRVSGEGHITCGHCRNCRGGRTHLCRNTLGVGVNRP--GCFAEYLVLPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGIIHTVNVAKENLTDVMANL-----GMTEGFDVGLEMSGAPPAFRAMLDTMNHGGRIAMLG 263          
The following BLAST results are available for this feature:
BLAST of EY728818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
TDH_BURP85.894e-2835.45L-threonine 3-dehydrogenase OS=Burkholderia phymat... [more]
TDH_CHRVO7.698e-2836.62L-threonine 3-dehydrogenase OS=Chromobacterium vio... [more]
TDH_SHEFN1.005e-2734.74L-threonine 3-dehydrogenase OS=Shewanella frigidim... [more]
TDH_PHOPR1.313e-2735.21L-threonine 3-dehydrogenase OS=Photobacterium prof... [more]
TDH_IDILO1.313e-2735.68L-threonine 3-dehydrogenase OS=Idiomarina loihiens... [more]
TDH_AERHH1.313e-2735.98L-threonine 3-dehydrogenase OS=Aeromonas hydrophil... [more]
TDH_SHIDS2.240e-2735.05L-threonine 3-dehydrogenase OS=Shigella dysenteria... [more]
TDH_BURVG2.240e-2734.55L-threonine 3-dehydrogenase OS=Burkholderia vietna... [more]
TDH_VIBPA2.925e-2734.74L-threonine 3-dehydrogenase OS=Vibrio parahaemolyt... [more]
TDH_CITK82.925e-2735.05L-threonine 3-dehydrogenase OS=Citrobacter koseri ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-009-A07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728818 ID=EY728818; Name=EY728818; organism=Citrus sinensis; type=EST; length=827bp
CACGCGTCCGAGACCTTGAGGCTTGCCGATTTTGTAGTGAAAGAGCCTAT
GGTGATCGGGCATGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGCGAGG
TGAAGACTTTGGTGCCCGGTGACCGTGTGGCCCTGGAACCAGGGATCAGC
TGCTGGCGATGTGATCACTGCAAAGGAGGTCGATACAATTTGTGTCCAGA
GATGAAATTTTTTGCAACTCCGCCAGTTCATGGTTCTCTGGCTAATCAGG
TGGTGCATCCTGCAGACCTATGTTTTAAGCTGCCGGACAATGTGAGCCTG
GAGGAAGGGGCTATGTGTGAGCCCTTGAGTGTTGGTGTTCATGCTTGCCG
CCGTGCCAATATCGGTCCTGAGACAAATGTGCTTATCATGGGTGCAGGGC
CCATAGGACTTGTCACAATGCTAGCAGCTCGTGCTTTTGGAGCTCCTAGA
ATTGTCATTGTGGATGTGGATGACTATCGTTTATCTGTTGCAAAGGAAAT
TGGTGCAGATAATATTGTTAAAGTTTCAACAAATTTGCAGGATATAGCTG
AAGAAGTGGAAAAGATACAGAAAGCCATGGGGACAGGAATAGATGTGAGC
TTTGATTGTGCAGGCCTTNAACAAACCATGTTCACAGCACTGGGCGCCAC
TTGTGCAGGTGGTAAAGTTTGCCTCGTGGGGGATGGGTCATCATGAAATG
ACTGTTCCACTCACTCCANCTGCTGTAAGGTGATTGGATTTGGCTTAAAT
AANGGCAAAAGGGAATCTTGAACANGGTGGCTGCCANGCGTGATGGACTG
ATGGTGATGCTATGACAAGTATCCTAT
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