EY728812

Overview
NameEY728812
Unique NameEY728812
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728812 vs. ExPASy Swiss-Prot
Match: UBC16_ARATH (Probable ubiquitin carrier protein E2 16 OS=Arabidopsis thaliana GN=UBC16 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.381e-16
Identity = 43/112 (38.39%), Postives = 67/112 (59.82%), Query Frame = 1
Query:  193 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAF-RTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 525
            +A+ R+ KEL + Q +PPT      V +++  W   ++G   + YA   + + + FP  YP + P+V F      HP+I SNG ICLDIL + WSPA+T+S + +SI S+L+
Sbjct:   15 IATNRLQKELVEWQMNPPTGFKH-KVTDNLQRWIIEVIGAPGTLYANDTYQLQVDFPEHYPMESPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLS 125          
BLAST of EY728812 vs. ExPASy Swiss-Prot
Match: UBE2F_DANRE (NEDD8-conjugating enzyme UBE2F OS=Danio rerio GN=ube2f PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.110e-16
Identity = 50/149 (33.56%), Postives = 77/149 (51.68%), Query Frame = 1
Query:  208 ILKELKDLQKDPPTSCSAG-PVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLYPEIAHMYKSDKAXYESTARSWTQKYA 630
            ++KE+ +L+ + P++C    P    + H+Q  I  P +  Y GG F   I  P  Y   PPKV   T+++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  + A  +  DK  + +  + + + YA
Sbjct:   37 LIKEVAELEANLPSTCKVTFPDENKLCHFQLAI-SPDEGYYLGGKFQFEIEVPEAYNMVPPKVKCLTRIWHPNIAETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIDAAEHHLRDKEDFRNKVQDFIKNYA 184          
BLAST of EY728812 vs. ExPASy Swiss-Prot
Match: UBC3_YEAST (Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharomyces cerevisiae GN=CDC34 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.110e-16
Identity = 49/148 (33.11%), Postives = 73/148 (49.32%), Query Frame = 1
Query:  205 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPS-DSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL------------KEQWSPALTISKVLLSICSLLTDPNPDDPLYPEIAHMYKSDKAXYESTAR 609
            R  +EL D +K  P+         ++F W   +M  + DS Y GG F   + FP D+PF PP+  F   ++HPN+  +G +C+ IL             E WSP  T+  VL+SI SLL DPN + P   + A  Y+ +   Y+   +
Sbjct:   14 RQYRELTDPKKAIPSFHIELEDDSNIFTWNIGVMVLNEDSIYHGGFFKAQMRFPEDFPFSPPQFRFTPAIYHPNVYRDGRLCISILHQSGDPMTDEPDAETWSPVQTVESVLISIVSLLEDPNINSPANVDAAVDYRKNPEQYKQRVK 161          
BLAST of EY728812 vs. ExPASy Swiss-Prot
Match: UBE2F_RAT (NEDD8-conjugating enzyme UBE2F OS=Rattus norvegicus GN=Ube2f PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 4.062e-16
Identity = 49/150 (32.67%), Postives = 72/150 (48.00%), Query Frame = 1
Query:  202 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLYPEIAHMYKSDKAXYESTARSWTQKYA 630
            K ++KE+ +L+ + P +C       +  H     + P +  Y GG F      P  Y   PPKV   TK++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  E A  +  DK  +      + ++YA
Sbjct:   35 KLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVSPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRDKVDEYIKRYA 184          
BLAST of EY728812 vs. ExPASy Swiss-Prot
Match: UB2FA_MOUSE (NEDD8-conjugating enzyme UBE2F OS=Mus musculus GN=Ube2f PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.062e-16
Identity = 49/150 (32.67%), Postives = 72/150 (48.00%), Query Frame = 1
Query:  202 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLYPEIAHMYKSDKAXYESTARSWTQKYA 630
            K ++KE+ +L+ + P +C       +  H     + P +  Y GG F      P  Y   PPKV   TK++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  E A  +  DK  +      + ++YA
Sbjct:   35 KLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVSPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRDKVDEYIKRYA 184          
BLAST of EY728812 vs. ExPASy Swiss-Prot
Match: UBE2F_HUMAN (NEDD8-conjugating enzyme UBE2F OS=Homo sapiens GN=UBE2F PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.305e-16
Identity = 49/150 (32.67%), Postives = 73/150 (48.67%), Query Frame = 1
Query:  202 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLYPEIAHMYKSDKAXYESTARSWTQKYA 630
            K ++KE+ +L+ + P +C       +  H     + P +  Y GG F      P  Y   PPKV   TK++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  E A  +  DK  + +    + ++YA
Sbjct:   35 KLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYA 184          
BLAST of EY728812 vs. ExPASy Swiss-Prot
Match: UBC6_SCHPO (Ubiquitin-conjugating enzyme E2 6 OS=Schizosaccharomyces pombe GN=ubc6 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.305e-16
Identity = 43/113 (38.05%), Postives = 62/113 (54.87%), Query Frame = 1
Query:  196 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLT 525
            A KR++KE   LQK+P     A P  E++  W   I GP D+PY GG +  T+ FPPDYPFKPP +   T        +N  +CL   D   + W+P+  +S +L+ + S +T
Sbjct:    6 AYKRLMKEYLALQKNPVELVDAKPATENILEWHYIITGPPDTPYEGGQYHGTLIFPPDYPFKPPAIRMITP--SGRFQTNTRLCLSFSDFHPKSWNPSWMVSTILVGLVSFMT 116          
BLAST of EY728812 vs. ExPASy Swiss-Prot
Match: UBE2F_BOVIN (NEDD8-conjugating enzyme UBE2F OS=Bos taurus GN=UBE2F PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.049e-16
Identity = 51/156 (32.69%), Postives = 75/156 (48.08%), Query Frame = 1
Query:  187 RVMASKRIL-KELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLYPEIAHMYKSDKAXYESTARSWTQKYA 630
            RV    R+L KE+ +L+ + P +C       +  H     + P +  Y GG F      P  Y   PPKV   T+++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  E A  +  DK  + +    + ++YA
Sbjct:   29 RVSVRDRLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVEDYIKRYA 184          
BLAST of EY728812 vs. ExPASy Swiss-Prot
Match: UBC18_ARATH (Probable ubiquitin carrier protein E2 18 OS=Arabidopsis thaliana GN=UBC18 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.049e-16
Identity = 44/112 (39.29%), Postives = 65/112 (58.04%), Query Frame = 1
Query:  193 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV-FHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 525
            +A  R+ KEL + Q +PPT      V +++  W   + G   + YA   + + + FP  YP + P+V F      HP+I SNG ICLDIL + WSPA+T+S V +SI S+L+
Sbjct:   15 IACNRLQKELSEWQVNPPTGFKHR-VTDNLQKWVIEVTGAPGTLYANETYNLQVEFPQHYPMEAPQVIFVPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLS 125          
BLAST of EY728812 vs. ExPASy Swiss-Prot
Match: UBC15_ARATH (Ubiquitin-conjugating enzyme 15 OS=Arabidopsis thaliana GN=UBC15 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 9.049e-16
Identity = 43/112 (38.39%), Postives = 66/112 (58.93%), Query Frame = 1
Query:  193 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV-FHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 525
            +A  R+ KEL + Q +PPT      V +++  W   + G   + YA   + + + FP  YP + P+V F +    HP+I SNG ICLDIL + WSPA+T++ V +SI S+L+
Sbjct:   15 IACNRLQKELSEWQLNPPTGFRH-KVTDNLQKWTIDVTGAPGTLYANETYQLQVEFPEHYPMEAPQVVFVSPAPSHPHIYSNGHICLDILYDSWSPAMTVNSVCISILSMLS 125          
The following BLAST results are available for this feature:
BLAST of EY728812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 268
Match NameE-valueIdentityDescription
UBC16_ARATH2.381e-1638.39Probable ubiquitin carrier protein E2 16 OS=Arabid... [more]
UBE2F_DANRE3.110e-1633.56NEDD8-conjugating enzyme UBE2F OS=Danio rerio GN=u... [more]
UBC3_YEAST3.110e-1633.11Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharo... [more]
UBE2F_RAT4.062e-1632.67NEDD8-conjugating enzyme UBE2F OS=Rattus norvegicu... [more]
UB2FA_MOUSE4.062e-1632.67NEDD8-conjugating enzyme UBE2F OS=Mus musculus GN=... [more]
UBE2F_HUMAN5.305e-1632.67NEDD8-conjugating enzyme UBE2F OS=Homo sapiens GN=... [more]
UBC6_SCHPO5.305e-1638.05Ubiquitin-conjugating enzyme E2 6 OS=Schizosacchar... [more]
UBE2F_BOVIN9.049e-1632.69NEDD8-conjugating enzyme UBE2F OS=Bos taurus GN=UB... [more]
UBC18_ARATH9.049e-1639.29Probable ubiquitin carrier protein E2 18 OS=Arabid... [more]
UBC15_ARATH9.049e-1638.39Ubiquitin-conjugating enzyme 15 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-008-H10-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728812 ID=EY728812; Name=EY728812; organism=Citrus sinensis; type=EST; length=839bp
CACGCGTCCGGTTGAAGGACACAAAGCAAGGGGTTGATAGAGGAGCGAGG
CGGGGGCGGCTTGACGACCTAGATCTGCTTCACCGTTTCGCTTTCTCGAC
GCTATCGCTCTCCGATCCTGTTCTCTGCCGCGCAAGTTTCGCAGGTCTTA
AGGTTCGTTGTAGTTTCAATTTTAATAATCCCTTGAAGAGTCATGGCTTC
AAAGCGTATTTTGAAGGAACTCAAGGATTTGCAGAAGGATCCTCCCACGT
CTTGCAGCGCTGGCCCTGTGGCTGAAGACATGTTCCACTGGCAAGCAACA
ATTATGGGCCCTTCTGATAGCCCATATGCAGGAGGTGTATTTTTAGTTAC
CATTCATTTTCCTCCTGATTATCCTTTCAAGCCCCCAAAGGTTGCTTTTA
GGACCAAGGTCTTCCACCCGAACATCAACAGCAATGGAAGCATCTGTCTT
GATATCCTTAAAGAACAGTGGAGTCCAGCGCTTACCATTTCAAAGGTCCT
GCTCTCTATCTGCTCCTTGCTTACTGATCCAAATCCCGACGACCCTCTGT
ACCCGGAGATTGCCCACATGTACAAGTCCGACAAGGCCANATATGAATCC
ACGGCCAGGAGCTGGACACAGAAGTATGCCATGGGATGAAGGTTGTTANG
ATATTGCANAAAAANGGAGCATTATTGAAATATGTNGTGTGTGTTGTCTA
TCTATTTTCTTTAACTTGCTTTGGGGAGGGCANACGTTGTGTTTACAATG
TGTTGGGAGGAATGCAAGGCCGGACTTTTAGTTATGGGATGTTGGTTGAA
CTCTTCAGGACTAATATGTCTATCTTAAAAAAAAAGGCA
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