EY728812

Overview
NameEY728812
Unique NameEY728812
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728812 vs. ExPASy Swiss-Prot
Match: UBE2W_MOUSE (Probable ubiquitin-conjugating enzyme E2 W OS=Mus musculus GN=Ube2w PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.911e-14
Identity = 48/126 (38.10%), Postives = 63/126 (50.00%), Query Frame = 1
Query:  202 KRILKELKDLQKDPPTSCSAGP--VAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTK--VFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPN-----PDDPLY 552
            KR+ KEL  LQ DPP   +     V   +  W   + G   + Y G  F +   F   YPF  P+V F  +    HP++ SNG ICL IL E WSPAL++  V LSI S+L+        PD+  Y
Sbjct:    6 KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPIHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFY 131          
BLAST of EY728812 vs. ExPASy Swiss-Prot
Match: UBE2W_HUMAN (Probable ubiquitin-conjugating enzyme E2 W OS=Homo sapiens GN=UBE2W PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.802e-14
Identity = 48/126 (38.10%), Postives = 63/126 (50.00%), Query Frame = 1
Query:  202 KRILKELKDLQKDPPTSCSAGP--VAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVF--HPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPN-----PDDPLY 552
            KR+ KEL  LQ DPP   +     V   +  W   + G   + Y G  F +   F   YPF  P+V F  +    HP++ SNG ICL IL E WSPAL++  V LSI S+L+        PD+  Y
Sbjct:    6 KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFY 131          
BLAST of EY728812 vs. ExPASy Swiss-Prot
Match: UBC6_CANGA (Ubiquitin-conjugating enzyme E2 6 OS=Candida glabrata GN=UBC6 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.445e-13
Identity = 39/113 (34.51%), Postives = 60/113 (53.10%), Query Frame = 1
Query:  196 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLT 525
            A KR+ KE K + ++PP    A P  E++  W   I GP D+PY GG +  T+ FP DYP+KPP +   T   +     N  +CL   D   + W+P  +++ +L  + S +T
Sbjct:    6 AQKRLTKEYKMMVENPPPFIIARPNEENILEWHYVISGPPDTPYDGGQYHGTLTFPSDYPYKPPAIRMITP--NGRFKENTRLCLSMSDYHPDTWNPGWSVATILNGLLSFMT 116          
BLAST of EY728812 vs. ExPASy Swiss-Prot
Match: UBC6_YEAST (Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces cerevisiae GN=UBC6 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.887e-13
Identity = 39/113 (34.51%), Postives = 61/113 (53.98%), Query Frame = 1
Query:  196 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLT 525
            A KR+ KE K + ++PP    A P  +++  W   I GP+D+PY GG +  T+ FP DYP+KPP +   T   +     N  +CL   D   + W+P  ++S +L  + S +T
Sbjct:    6 AHKRLTKEYKLMVENPPPYILARPNEDNILEWHYIITGPADTPYKGGQYHGTLTFPSDYPYKPPAIRMITP--NGRFKPNTRLCLSMSDYHPDTWNPGWSVSTILNGLLSFMT 116          
BLAST of EY728812 vs. ExPASy Swiss-Prot
Match: UBC34_ARATH (Ubiquitin carrier protein E2 34 OS=Arabidopsis thaliana GN=UBC34 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.464e-13
Identity = 38/115 (33.04%), Postives = 59/115 (51.30%), Query Frame = 1
Query:  202 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLTDPNP 537
            KR+ KE + L K+P +   A P   D+  W   + G   +P+AGG +   I FPP+YP+KPP +   T   +    +   ICL   D   E W+P  ++S +L  + S + D +P
Sbjct:    8 KRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSEGTPFAGGFYYGKIKFPPEYPYKPPGITMTTP--NGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSP 120          
BLAST of EY728812 vs. ExPASy Swiss-Prot
Match: UBC6_KLULA (Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces lactis GN=UBC6 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.218e-13
Identity = 38/115 (33.04%), Postives = 59/115 (51.30%), Query Frame = 1
Query:  190 VMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLT 525
            + A+KR+ KE K++  +PP    A P  +++  W   I GP  +PY  G +  T+ FP DYPF PP +   T   +     N  +CL   D   E W+PA ++  +L  + S +T
Sbjct:    4 IQANKRLTKEYKNIVNNPPPFIIAAPHEDNILEWHYVITGPPSTPYENGQYHGTLTFPSDYPFNPPAIRMITP--NGRFKENTRLCLSMSDYHPEAWNPAWSVVTILNGLLSFMT 116          
BLAST of EY728812 vs. ExPASy Swiss-Prot
Match: UBC33_ARATH (Probable ubiquitin carrier protein E2 33 OS=Arabidopsis thaliana GN=UBC33 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.203e-13
Identity = 38/115 (33.04%), Postives = 59/115 (51.30%), Query Frame = 1
Query:  202 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLTDPNP 537
            KR+ KE + L K+P +   A P   D+  W   + G   +P+AGG +   I FPP+YP+KPP +   T   +    +   ICL   D   E W+P  ++S +L  + S + D +P
Sbjct:    8 KRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSEGTPFAGGFYYGKIKFPPEYPYKPPGITMTTP--NGRFVTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSP 120          
BLAST of EY728812 vs. ExPASy Swiss-Prot
Match: Y1A1_ENCCU (Probable ubiquitin-conjugating enzyme E2 ECU01_1010 OS=Encephalitozoon cuniculi GN=ECU01_1010 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.223e-12
Identity = 36/116 (31.03%), Postives = 56/116 (48.28%), Query Frame = 1
Query:  289 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL--------------KEQWSPALTISKVLLSICSLLTDPNPDDPLYPEIAHMYKSDKAXY 594
            W        DS YAG +    + FP  YP +PP + F +K+FHPNI  +G +C+ IL              K++W+P   I  +++SI  +L  PN   P   + + MY+ +   Y
Sbjct:   68 WDIYFTLGGDSLYAGRILKAVMKFPSSYPLRPPTLKFVSKMFHPNIYEDGKMCISILEEDKQQDSSVFGDPKDKWTPVQNIRTIVMSIVVILNSPNISSPANVDASVMYRDNPEEY 183          
BLAST of EY728812 vs. ExPASy Swiss-Prot
Match: UB2J1_MOUSE (Ubiquitin-conjugating enzyme E2 J1 OS=Mus musculus GN=Ube2j1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.086e-12
Identity = 41/112 (36.61%), Postives = 58/112 (51.79%), Query Frame = 1
Query:  196 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL---KEQWSPALTISKVLLSICSLL 522
            A KR++KE  +L KDP     A P+ +++F W  T+ GP DS + GGV+   I  PP+YP KPP +   T   +        ICL I     E W P+ +I   LL+I   +
Sbjct:   11 AVKRLMKEAAEL-KDPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHGRIVLPPEYPMKPPSIILLTA--NGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFM 119          
BLAST of EY728812 vs. ExPASy Swiss-Prot
Match: UB2J1_HUMAN (Ubiquitin-conjugating enzyme E2 J1 OS=Homo sapiens GN=UBE2J1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.086e-12
Identity = 41/112 (36.61%), Postives = 58/112 (51.79%), Query Frame = 1
Query:  196 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL---KEQWSPALTISKVLLSICSLL 522
            A KR++KE  +L KDP     A P+ +++F W  T+ GP DS + GGV+   I  PP+YP KPP +   T   +        ICL I     E W P+ +I   LL+I   +
Sbjct:   11 AVKRLMKEAAEL-KDPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHGRIVLPPEYPMKPPSIILLTA--NGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFM 119          
The following BLAST results are available for this feature:
BLAST of EY728812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 268
Match NameE-valueIdentityDescription
UBE2W_MOUSE2.911e-1438.10Probable ubiquitin-conjugating enzyme E2 W OS=Mus ... [more]
UBE2W_HUMAN3.802e-1438.10Probable ubiquitin-conjugating enzyme E2 W OS=Homo... [more]
UBC6_CANGA1.445e-1334.51Ubiquitin-conjugating enzyme E2 6 OS=Candida glabr... [more]
UBC6_YEAST1.887e-1334.51Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces... [more]
UBC34_ARATH2.464e-1333.04Ubiquitin carrier protein E2 34 OS=Arabidopsis tha... [more]
UBC6_KLULA3.218e-1333.04Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces... [more]
UBC33_ARATH4.203e-1333.04Probable ubiquitin carrier protein E2 33 OS=Arabid... [more]
Y1A1_ENCCU1.223e-1231.03Probable ubiquitin-conjugating enzyme E2 ECU01_101... [more]
UB2J1_MOUSE2.086e-1236.61Ubiquitin-conjugating enzyme E2 J1 OS=Mus musculus... [more]
UB2J1_HUMAN2.086e-1236.61Ubiquitin-conjugating enzyme E2 J1 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-008-H10-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728812 ID=EY728812; Name=EY728812; organism=Citrus sinensis; type=EST; length=839bp
CACGCGTCCGGTTGAAGGACACAAAGCAAGGGGTTGATAGAGGAGCGAGG
CGGGGGCGGCTTGACGACCTAGATCTGCTTCACCGTTTCGCTTTCTCGAC
GCTATCGCTCTCCGATCCTGTTCTCTGCCGCGCAAGTTTCGCAGGTCTTA
AGGTTCGTTGTAGTTTCAATTTTAATAATCCCTTGAAGAGTCATGGCTTC
AAAGCGTATTTTGAAGGAACTCAAGGATTTGCAGAAGGATCCTCCCACGT
CTTGCAGCGCTGGCCCTGTGGCTGAAGACATGTTCCACTGGCAAGCAACA
ATTATGGGCCCTTCTGATAGCCCATATGCAGGAGGTGTATTTTTAGTTAC
CATTCATTTTCCTCCTGATTATCCTTTCAAGCCCCCAAAGGTTGCTTTTA
GGACCAAGGTCTTCCACCCGAACATCAACAGCAATGGAAGCATCTGTCTT
GATATCCTTAAAGAACAGTGGAGTCCAGCGCTTACCATTTCAAAGGTCCT
GCTCTCTATCTGCTCCTTGCTTACTGATCCAAATCCCGACGACCCTCTGT
ACCCGGAGATTGCCCACATGTACAAGTCCGACAAGGCCANATATGAATCC
ACGGCCAGGAGCTGGACACAGAAGTATGCCATGGGATGAAGGTTGTTANG
ATATTGCANAAAAANGGAGCATTATTGAAATATGTNGTGTGTGTTGTCTA
TCTATTTTCTTTAACTTGCTTTGGGGAGGGCANACGTTGTGTTTACAATG
TGTTGGGAGGAATGCAAGGCCGGACTTTTAGTTATGGGATGTTGGTTGAA
CTCTTCAGGACTAATATGTCTATCTTAAAAAAAAAGGCA
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