EY728812

Overview
NameEY728812
Unique NameEY728812
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728812 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.939e-34
Identity = 68/144 (47.22%), Postives = 96/144 (66.67%), Query Frame = 1
Query:  202 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLYPEIAHMYKSDKAXYESTARSWTQKYAM 633
            +RI+KE + L  +P     A P   +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++ +G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K+++A    TAR+WT+ YAM
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKSGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of EY728812 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.532e-34
Identity = 69/144 (47.92%), Postives = 95/144 (65.97%), Query Frame = 1
Query:  202 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLYPEIAHMYKSDKAXYESTARSWTQKYAM 633
            +RI+KE + L  +P     A P   +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KS++A    TAR+WT+ YAM
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKSNEAQAIETARAWTRLYAM 149          
BLAST of EY728812 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.320e-34
Identity = 69/146 (47.26%), Postives = 92/146 (63.01%), Query Frame = 1
Query:  196 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLYPEIAHMYKSDKAXY-----ESTARSWT 618
            A KR++++ K LQ+DPP   S  P   ++  W A I GP D+P+ GG F +T+ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A MY  +K  Y     E   +SWT
Sbjct:    5 ARKRLMRDFKRLQQDPPAGISGAPHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSENKREYNRKVREVVEQSWT 150          
BLAST of EY728812 vs. ExPASy Swiss-Prot
Match: UBE2N_PONAB (Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii GN=UBE2N PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.642e-34
Identity = 68/144 (47.22%), Postives = 95/144 (65.97%), Query Frame = 1
Query:  202 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLYPEIAHMYKSDKAXYESTARSWTQKYAM 633
            +RI+KE + L  +P     A P   +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K+++A    TAR+WT+ YAM
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of EY728812 vs. ExPASy Swiss-Prot
Match: UBE2N_MOUSE (Ubiquitin-conjugating enzyme E2 N OS=Mus musculus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.642e-34
Identity = 68/144 (47.22%), Postives = 95/144 (65.97%), Query Frame = 1
Query:  202 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLYPEIAHMYKSDKAXYESTARSWTQKYAM 633
            +RI+KE + L  +P     A P   +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K+++A    TAR+WT+ YAM
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of EY728812 vs. ExPASy Swiss-Prot
Match: UBE2N_HUMAN (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.642e-34
Identity = 68/144 (47.22%), Postives = 95/144 (65.97%), Query Frame = 1
Query:  202 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLYPEIAHMYKSDKAXYESTARSWTQKYAM 633
            +RI+KE + L  +P     A P   +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K+++A    TAR+WT+ YAM
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of EY728812 vs. ExPASy Swiss-Prot
Match: UBE2N_BOVIN (Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN=UBE2N PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.642e-34
Identity = 68/144 (47.22%), Postives = 95/144 (65.97%), Query Frame = 1
Query:  202 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLYPEIAHMYKSDKAXYESTARSWTQKYAM 633
            +RI+KE + L  +P     A P   +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K+++A    TAR+WT+ YAM
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of EY728812 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 7.368e-34
Identity = 69/143 (48.25%), Postives = 95/143 (66.43%), Query Frame = 1
Query:  202 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLYPEIAHMYKSDKAXYESTARSWTQKYA 630
            KRI+KE + L  +P    SA P  ++  +++  I GP DSP+ GGVF + +    DYP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K+++    + AR WT+ YA
Sbjct:    6 KRIIKETQRLMTEPAPGISATPATDNFRYFKVAISGPLDSPFEGGVFNLELFLTDDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEHWKTNEKEAMARAREWTRLYA 148          
BLAST of EY728812 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.368e-34
Identity = 68/146 (46.58%), Postives = 90/146 (61.64%), Query Frame = 1
Query:  196 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLYPEIAHMYKSDKAXYESTAR-----SWT 618
            A KR++++ K LQ+DPP   S  P   ++  W A I GP D+P+ GG F +++ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A MY   K  Y    R     SWT
Sbjct:    5 ARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWT 150          
BLAST of EY728812 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 1.257e-33
Identity = 63/143 (44.06%), Postives = 92/143 (64.34%), Query Frame = 1
Query:  196 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLYPEIAHMYKSDKAXYESTARSWTQK 624
            A +R++++ K LQ+DPPT  S  P   ++  W A I GP D+P+  G F +TI F  +YP KPP V F +KVFHPN+ ++G ICLDIL+ +WSP   +S +L SI SLL+DPNP+ P     A +YK ++  YE   ++  ++
Sbjct:    5 ARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKVFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSTAAQLYKENRREYEKRVKACVEQ 147          
The following BLAST results are available for this feature:
BLAST of EY728812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 268
Match NameE-valueIdentityDescription
UBE2N_MACFA1.939e-3447.22Ubiquitin-conjugating enzyme E2 N OS=Macaca fascic... [more]
UBE2N_RAT2.532e-3447.92Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]
UBC2_WHEAT4.320e-3447.26Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UBE2N_PONAB5.642e-3447.22Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii ... [more]
UBE2N_MOUSE5.642e-3447.22Ubiquitin-conjugating enzyme E2 N OS=Mus musculus ... [more]
UBE2N_HUMAN5.642e-3447.22Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ... [more]
UBE2N_BOVIN5.642e-3447.22Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN... [more]
UBE2N_DICDI7.368e-3448.25Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]
UBC1_ARATH7.368e-3446.58Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]
UBCD6_DROME1.257e-3344.06Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-008-H10-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728812 ID=EY728812; Name=EY728812; organism=Citrus sinensis; type=EST; length=839bp
CACGCGTCCGGTTGAAGGACACAAAGCAAGGGGTTGATAGAGGAGCGAGG
CGGGGGCGGCTTGACGACCTAGATCTGCTTCACCGTTTCGCTTTCTCGAC
GCTATCGCTCTCCGATCCTGTTCTCTGCCGCGCAAGTTTCGCAGGTCTTA
AGGTTCGTTGTAGTTTCAATTTTAATAATCCCTTGAAGAGTCATGGCTTC
AAAGCGTATTTTGAAGGAACTCAAGGATTTGCAGAAGGATCCTCCCACGT
CTTGCAGCGCTGGCCCTGTGGCTGAAGACATGTTCCACTGGCAAGCAACA
ATTATGGGCCCTTCTGATAGCCCATATGCAGGAGGTGTATTTTTAGTTAC
CATTCATTTTCCTCCTGATTATCCTTTCAAGCCCCCAAAGGTTGCTTTTA
GGACCAAGGTCTTCCACCCGAACATCAACAGCAATGGAAGCATCTGTCTT
GATATCCTTAAAGAACAGTGGAGTCCAGCGCTTACCATTTCAAAGGTCCT
GCTCTCTATCTGCTCCTTGCTTACTGATCCAAATCCCGACGACCCTCTGT
ACCCGGAGATTGCCCACATGTACAAGTCCGACAAGGCCANATATGAATCC
ACGGCCAGGAGCTGGACACAGAAGTATGCCATGGGATGAAGGTTGTTANG
ATATTGCANAAAAANGGAGCATTATTGAAATATGTNGTGTGTGTTGTCTA
TCTATTTTCTTTAACTTGCTTTGGGGAGGGCANACGTTGTGTTTACAATG
TGTTGGGAGGAATGCAAGGCCGGACTTTTAGTTATGGGATGTTGGTTGAA
CTCTTCAGGACTAATATGTCTATCTTAAAAAAAAAGGCA
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