EY728806

Overview
NameEY728806
Unique NameEY728806
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728806 vs. ExPASy Swiss-Prot
Match: ARFO_ARATH (Putative auxin response factor 15 OS=Arabidopsis thaliana GN=ARF15 PE=3 SV=2)

HSP 1 Score: 62.7734 bits (151), Expect = 3.911e-13
Identity = 30/73 (41.10%), Postives = 50/73 (68.49%), Query Frame = 3
Query:  441 EKSCLRSPQESQSRQI---RSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMXDIEGDLCGFTKKWQVVYT 650
            +   LRSP + QS+Q    R+CTKV MQG+ +GRAVDL+  + Y+ L+ +LE++ D++G L     +W++++T
Sbjct:  492 QSQTLRSPTKIQSKQFSSTRTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDLKGQL-QTRNQWKIIFT 563          

HSP 2 Score: 33.113 bits (74), Expect = 3.911e-13
Identity = 12/16 (75.00%), Postives = 14/16 (87.50%), Query Frame = 1
Query:  676 VGDDPWHEFCXMVRKI 723
            VGDDPW EFC MV++I
Sbjct:  572 VGDDPWPEFCNMVKRI 587          
BLAST of EY728806 vs. ExPASy Swiss-Prot
Match: ARFD_ORYSJ (Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.255e-13
Identity = 60/192 (31.25%), Postives = 93/192 (48.44%), Query Frame = 3
Query:  231 EKRQGNGNTCRLFGIQLVDNSNVEEASPAFTMSGAMGDDRAIPCLDADSDQHSEPSNINRSDVPSVSCDA-------EKSCLRSPQESQSRQ-------IRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMXDIEGDLCGFTKKWQVVYTXXXXXXXXGGR*SMA*VLXHGEENFIYTAEEVKNLVPK 764
            EK +G+G   ++FG + VD +N    +P   +S  M      P L   S  + +   +    +P VS          EKS  ++ Q S+  Q        RSCTKVH QG+A+GR+VDL++F  Y++L  +L++M + +G+L    K WQ+VYT         G            + +IYT EEV+ +  K
Sbjct:  601 EKTEGSG--FKIFGFK-VDTTN----APNNHLSSPMAATHE-PMLQTPSSLN-QLQPVQTDCIPEVSVSTAGTATENEKSGQQAQQSSKDVQSKTQVASTRSCTKVHKQGVALGRSVDLSKFSNYDELKAELDKMFEFDGELVSSNKNWQIVYTDNEGDMMLVGDDPWEEFCSIVRKIYIYTKEEVQKMNSK 783          
BLAST of EY728806 vs. ExPASy Swiss-Prot
Match: ARFR_ARATH (Auxin response factor 18 OS=Arabidopsis thaliana GN=ARF18 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.171e-12
Identity = 50/134 (37.31%), Postives = 69/134 (51.49%), Query Frame = 3
Query:  387 SEPSNINRSDVPSVSCDAEKSCLRSPQESQSRQ-----IRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMXDIEGDLCGFTKKWQVVYTXXXXXXXXGGR*SMA*VLXHGEENFIYTAEEVKNLVPKVKL 773
            + P+ I +   P  +C A K        S S Q      RS TKV MQGIAVGRAVDLT    Y++L+ +LEEM +I+G L     KW VV+T         G           ++ FIY+++EVK +  K+K+
Sbjct:  450 NSPAPIPQDKQPMDTCGAAKCQEPITPTSMSEQKKQQTSRSRTKVQMQGIAVGRAVDLTLLKSYDELIDELEEMFEIQGQLLA-RDKWIVVFTDDEGDMMLAGDDPWNEFCKMAKKIFIYSSDEVKKMTTKLKI 582          
BLAST of EY728806 vs. ExPASy Swiss-Prot
Match: ARFI_ARATH (Auxin response factor 9 OS=Arabidopsis thaliana GN=ARF9 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.608e-12
Identity = 57/177 (32.20%), Postives = 87/177 (49.15%), Query Frame = 3
Query:  261 RLFGIQLVDNSNVEEASPAFTMSGAMGDDRAIPCLDADSDQHSEPSNINRSDVPSVSCDAEKSCLR-SPQESQSRQ---IRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMXDIEGDLCGFTKKWQVVYTXXXXXXXXGGR*SMA*VLXHGEENFIYTAEEVKNLVPKVKLQV 779
            RLFGI L+ +S          M       R I       D HS+P    +S++  VS + ++     SP+E QS+Q    RS TKV MQG+ VGRAVDL     Y +L+  +E++ DI+G+L     +W++V+T         G           +  FI++ EEVK + P  +L++
Sbjct:  454 RLFGIDLMSSSLAVPEEKTAPM-------RPINISKPTMDSHSDP----KSEISKVSEEKKQEPAEGSPKEVQSKQSSSTRSRTKVQMQGVPVGRAVDLNALKGYNELIDDIEKLFDIKGELRS-RNQWEIVFTDDEGDMMLVGDDPWPEFCNMVKRIFIWSKEEVKKMTPGNQLRM 618          
BLAST of EY728806 vs. ExPASy Swiss-Prot
Match: ARFN_ARATH (Putative auxin response factor 14 OS=Arabidopsis thaliana GN=ARF14 PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.406e-12
Identity = 42/114 (36.84%), Postives = 64/114 (56.14%), Query Frame = 3
Query:  441 EKSCLRSPQESQSRQI---RSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMXDIEGDLCGFTKKWQVVYTXXXXXXXXGGR*SMA*VLXHGEENFIYTAEEVKNLVPKVKL 773
            +   LRSP E QS+Q    R+CTKV MQG+ +GRAVDL+  + Y+ L+ +LE++ D++G L     +W++ +T         G           ++ FIY+ EEVKNL  +  L
Sbjct:  491 QSQILRSPTEIQSKQFSSTRTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDLKGQLQA-RNQWEIAFTNNEEDKMLVGEDPWPEFCNMVKKIFIYSKEEVKNLKSRKSL 603          
BLAST of EY728806 vs. ExPASy Swiss-Prot
Match: ARFK_ARATH (Auxin response factor 11 OS=Arabidopsis thaliana GN=ARF11 PE=2 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 5.811e-12
Identity = 56/171 (32.75%), Postives = 81/171 (47.37%), Query Frame = 3
Query:  252 NTCRLFGIQLVDNSNVEEASPAFTMSGAMGDDRAIPCLDADSDQHSEPSNINRSDVPSVSCDAEKSCLRSPQESQSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMXDIEGDLCGFTKKWQVVYTXXXXXXXXGGR*SMA*VLXHGEENFIYTAEEVKNLVPK 764
            ++CRLFG  L        + PA   S  +  D+ +  +D         SNI+ S   +  C    S     ++ Q    RS  KV MQG AVGRAVDLT    Y++L+K+LE+M +IEG+L     KW +V+T         G           ++ FIY ++EVK +  K
Sbjct:  454 SSCRLFGFDLT-------SKPA---SATIPHDKQLISVD---------SNISDS---TTKCQDPNSSNSPKEQKQQTSTRSRIKVQMQGTAVGRAVDLTLLRSYDELIKELEKMFEIEGELSP-KDKWAIVFTDDEGDRMLVGDDPWNEFCKMAKKLFIYPSDEVKKMRSK 601          
BLAST of EY728806 vs. ExPASy Swiss-Prot
Match: ARFU_ARATH (Putative auxin response factor 21 OS=Arabidopsis thaliana GN=ARF21 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.424e-11
Identity = 41/108 (37.96%), Postives = 61/108 (56.48%), Query Frame = 3
Query:  441 EKSCLRSPQESQSRQI---RSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMXDIEGDLCGFTKKWQVVYTXXXXXXXXGGR*SMA*VLXHGEENFIYTAEEVKNL 755
            +   LRSP E QS+Q    R+CTKV MQG+ +GRAVDL+  + Y+ L+ +LE++ DI+G L     +W++ +T         G           ++  IY+ EEVKNL
Sbjct:  492 QSQTLRSPIEIQSKQFSSSRTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDIKGQL-QTRNQWKIAFTDSDGYEMLVGDDPWPEFCKMVKKILIYSKEEVKNL 598          
The following BLAST results are available for this feature:
BLAST of EY728806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
ARFO_ARATH3.911e-1341.10Putative auxin response factor 15 OS=Arabidopsis t... [more]
ARFD_ORYSJ5.255e-1331.25Auxin response factor 4 OS=Oryza sativa subsp. jap... [more]
ARFR_ARATH1.171e-1237.31Auxin response factor 18 OS=Arabidopsis thaliana G... [more]
ARFI_ARATH2.608e-1232.20Auxin response factor 9 OS=Arabidopsis thaliana GN... [more]
ARFN_ARATH3.406e-1236.84Putative auxin response factor 14 OS=Arabidopsis t... [more]
ARFK_ARATH5.811e-1232.75Auxin response factor 11 OS=Arabidopsis thaliana G... [more]
ARFU_ARATH6.424e-1137.96Putative auxin response factor 21 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-008-H02-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728806 ID=EY728806; Name=EY728806; organism=Citrus sinensis; type=EST; length=820bp
CACGCGTCCGGGAAATCTCACGTTGAATCTTCAGCTTTCTCATACTGTGA
CTCACCGCAAGGACGCGACCTCTATCCATCACCTAAGTTTCCACTGCCAC
GAAGGGCAACCATTTTGGTTTGAGTGGAAATAAGTCACTGGCTGCTGTTT
CCAGCAACTCAATGTACTGGCCCAACCGTGCAGAAAATGTAACAGAATCA
TTTGCTCCAGTTGTGAACAAGGAATGCAGTGAAAAGAGACAGGGCAATGG
GAACACCTGCAGGCTATTTGGCATTCAGCTCGTTGACAACTCGAATGTAG
AAGAAGCTTCACCTGCTTTTACCATGTCTGGAGCAATGGGGGATGATCGA
GCAATTCCATGTTTAGATGCAGACTCTGACCAGCATTCTGAACCATCAAA
TATTAATCGATCTGACGTTCCTTCTGTAAGTTGTGATGCAGAGAAATCGT
GCCTGAGATCTCCTCAGGAGTCTCAAAGCAGGCAGATTCGAAGTTGCACA
AAGGTTCATATGCAAGGAATTGCAGTTGGGAGGGCTGTTGATTTGACACG
ATTTGACTGTTATGAAGACCTTCTCAAGAAACTGGAGGAGATGTNTGACA
TTGAGGGAGACCTGTGTGGATTCACCAAGAAGTGGCAAGTGGTCTACACT
GATGATGAAGATGACATGATGATGGGTGGGAGATGATCCATGGCATGAGT
TCTGTANCATGGTGAGGAAAATTTCATCTACACAGCAGAAGAAGTAAAAA
ACCTTGTCCCCAAGGTAAAACTCCAAGTTAACAGGAGCTCATGCCGGCAA
CCAAATGTTGAAGTGGTTGT
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