EY728793

Overview
NameEY728793
Unique NameEY728793
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length849
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY728793_ssr736 microsatellite EY728793_ssr736:736..747. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY728793 vs. ExPASy Swiss-Prot
Match: C71BH_ARATH (Cytochrome P450 71B17 OS=Arabidopsis thaliana GN=CYP71B17 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.325e-11
Identity = 35/104 (33.65%), Postives = 57/104 (54.81%), Query Frame = 3
Query:  237 PVIGHLHLLGRFPLHRVLGDMADKYGPIFTIRMGVHRALVVSNWEMAKECLTTHDRVFASRPKALVAEILGFNFSMFGFSPYGPHWRQIRKIATLELLSNHRLE 548
            PVIG+LH +G  P HR    +A++ G +  + +G     V+S+ E A+E L THD    SRP  + + ++   F    F+PYG  W++ R+    EL  + +L+
Sbjct:   38 PVIGNLHQVGELP-HRSFRRLAERTGHVMLLHLGFVPVTVISSREAAEEVLRTHDLDCCSRPNLVGSRLISRGFKDLNFTPYGEEWKERRRFLVGELFCSKKLQ 140          
BLAST of EY728793 vs. ExPASy Swiss-Prot
Match: TCMO_GLYEC (Trans-cinnamate 4-monooxygenase OS=Glycyrrhiza echinata GN=CYP73A14 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.036e-11
Identity = 38/100 (38.00%), Postives = 57/100 (57.00%), Query Frame = 3
Query:  237 PVIGHLHLLGRFPLHRVLGDMADKYGPIFTIRMGVHRALVVSNWEMAKECLTTHDRVFASRPKALVAEILGFNFSMFGFSPYGPHWRQIRKIATLELLSN 536
            P+ G+   +G    HR L D+A ++G IF +RMG    +VVS+ E+AKE L T    F SR + +V +I         F+ YG HWR++R+I T+   +N
Sbjct:   41 PIFGNWLQVGDDLNHRNLTDLAKRFGDIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTN 140          
BLAST of EY728793 vs. ExPASy Swiss-Prot
Match: C71AR_ARATH (Cytochrome P450 71A27 OS=Arabidopsis thaliana GN=CYP71A27 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 3.036e-11
Identity = 37/100 (37.00%), Postives = 55/100 (55.00%), Query Frame = 3
Query:  237 PVIGHLHLLGRFPLHRVLGDMADKYGPIFTIRMGVHRALVVSNWEMAKECLTTHDRVFASRPKALVAEILGFNFSMFGFSPYGPHWRQIRKIATLELLSN 536
            PVIG+LH LG  P HR L  ++ +YGP+  +  G    LVVS  ++  + + THD  FA+RPK+    I         F PYG  W+ ++ +  + LL+N
Sbjct:   41 PVIGNLHQLGPNP-HRYLHSLSLRYGPLMLLHFGRVPVLVVSCPDVTNDIMKTHDLKFANRPKSKAINIFMEGGRDIIFGPYGEDWKSMKSLGVVHLLNN 139          
BLAST of EY728793 vs. ExPASy Swiss-Prot
Match: C71AJ_ARATH (Cytochrome P450 71A19 OS=Arabidopsis thaliana GN=CYP71A19 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.036e-11
Identity = 37/100 (37.00%), Postives = 58/100 (58.00%), Query Frame = 3
Query:  237 PVIGHLHLLGRFPLHRVLGDMADKYGPIFTIRMGVHRALVVSNWEMAKECLTTHDRVFASRPKALVAEILGFNFSMFGFSPYGPHWRQIRKIATLELLSN 536
            PVIG+LH L     HR L  ++ +YGP+  +  G    L+VS+ ++A + L T+D + A+RPK  V + +        F+PYG +W+Q++ I    LLSN
Sbjct:   41 PVIGNLHQLS-LNTHRSLRSLSLRYGPLMLLHFGRTPVLIVSSADVAHDILKTYDVICANRPKTKVIDKILRGGRDVAFAPYGEYWKQMKSICIQNLLSN 139          
BLAST of EY728793 vs. ExPASy Swiss-Prot
Match: C98A1_SORBI (Cytochrome P450 98A1 OS=Sorghum bicolor GN=CYP98A1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.965e-11
Identity = 39/114 (34.21%), Postives = 62/114 (54.39%), Query Frame = 3
Query:  216 PEAGGAWPVIGHLHLLGRFPLH-RVLGDMADKYGPIFTIRMGVHRALVVSNWEMAKECLTTHDRVFASRPKALVAEILGFNFSMFGFSPYGPHWRQIRKIATLELLSNHRLEKL 554
            P     WPV+G+L  +   P+  R   + A++YGP+ ++  G    +VVS  E+AKE L  +D+  A RP+    +    N     ++ YGPH+ ++RK+  LEL +  RLE L
Sbjct:   32 PPGPRPWPVLGNLRQIK--PIRCRCFQEWAERYGPVISVWFGSGLTVVVSTSELAKEVLKENDQQLADRPRNRSTQRFSRNGQDLIWADYGPHYIKVRKLCNLELFTPKRLEAL 143          
BLAST of EY728793 vs. ExPASy Swiss-Prot
Match: TCMO_ZINEL (Trans-cinnamate 4-monooxygenase OS=Zinnia elegans GN=CYP73A12 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.179e-11
Identity = 38/100 (38.00%), Postives = 56/100 (56.00%), Query Frame = 3
Query:  237 PVIGHLHLLGRFPLHRVLGDMADKYGPIFTIRMGVHRALVVSNWEMAKECLTTHDRVFASRPKALVAEILGFNFSMFGFSPYGPHWRQIRKIATLELLSN 536
            P+ G+   +G    HR L D+A K+G IF +RMG    +VVS+  +AKE L T    F SR + +V +I         F+ YG HWR++R+I T+   +N
Sbjct:   41 PIFGNWLQVGDDLNHRNLTDLAKKFGEIFLLRMGQRNLVVVSSPNLAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTN 140          
BLAST of EY728793 vs. ExPASy Swiss-Prot
Match: TCMO_POPKI (Trans-cinnamate 4-monooxygenase OS=Populus kitakamiensis GN=CYP73A16 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.179e-11
Identity = 38/100 (38.00%), Postives = 57/100 (57.00%), Query Frame = 3
Query:  237 PVIGHLHLLGRFPLHRVLGDMADKYGPIFTIRMGVHRALVVSNWEMAKECLTTHDRVFASRPKALVAEILGFNFSMFGFSPYGPHWRQIRKIATLELLSN 536
            PV G+   +G    HR L D+A K+G IF +RMG    +VVS+ +++KE L T    F SR + +V +I         F+ YG HWR++R+I T+   +N
Sbjct:   41 PVFGNWLQVGDDLNHRNLTDLAKKFGDIFLLRMGQRNLVVVSSPDLSKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTN 140          
BLAST of EY728793 vs. ExPASy Swiss-Prot
Match: TCMO_MEDSA (Trans-cinnamate 4-monooxygenase OS=Medicago sativa GN=CYP73A3 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.834e-11
Identity = 38/100 (38.00%), Postives = 56/100 (56.00%), Query Frame = 3
Query:  237 PVIGHLHLLGRFPLHRVLGDMADKYGPIFTIRMGVHRALVVSNWEMAKECLTTHDRVFASRPKALVAEILGFNFSMFGFSPYGPHWRQIRKIATLELLSN 536
            P+ G+   +G    HR L D A ++G IF +RMG    +VVS+ E+AKE L T    F SR + +V +I         F+ YG HWR++R+I T+   +N
Sbjct:   41 PIFGYWLQVGDDLNHRNLTDYAKRFGEIFLLRMGQRNLVVVSSPELAKEVLHTQCVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTN 140          
The following BLAST results are available for this feature:
BLAST of EY728793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
C71BH_ARATH2.325e-1133.65Cytochrome P450 71B17 OS=Arabidopsis thaliana GN=C... [more]
TCMO_GLYEC3.036e-1138.00Trans-cinnamate 4-monooxygenase OS=Glycyrrhiza ech... [more]
C71AR_ARATH3.036e-1137.00Cytochrome P450 71A27 OS=Arabidopsis thaliana GN=C... [more]
C71AJ_ARATH3.036e-1137.00Cytochrome P450 71A19 OS=Arabidopsis thaliana GN=C... [more]
C98A1_SORBI3.965e-1134.21Cytochrome P450 98A1 OS=Sorghum bicolor GN=CYP98A1... [more]
TCMO_ZINEL5.179e-1138.00Trans-cinnamate 4-monooxygenase OS=Zinnia elegans ... [more]
TCMO_POPKI5.179e-1138.00Trans-cinnamate 4-monooxygenase OS=Populus kitakam... [more]
TCMO_MEDSA8.834e-1138.00Trans-cinnamate 4-monooxygenase OS=Medicago sativa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-008-F09-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728793 ID=EY728793; Name=EY728793; organism=Citrus sinensis; type=EST; length=849bp
CACGCGTCCGTATTTATCTCCTCTATTTGTCTTGAATGTGCATGCATATT
ATATTAAGCTCAACCACTCAGGCTTAGAAGGAAGCAGCGGCGATGGCCTT
TTTTGCATCCCAAACAAGTGCTGTAGCTGCGATTTTAACCCTTATAATCT
TTCTATACACTTTGTTGTTGTTTGTTTCAAGAAATTACGCAAGCAATAAG
AAGAAGAGAGGACCTCCAGAAGCTGGTGGAGCATGGCCTGTGATTGGGCA
TCTACACCTCTTGGGAAGGTTCCCCCTTCACAGAGTGTTGGGAGACATGG
CTGACAAGTACGGACCAATCTTCACAATCAGGATGGGCGTACATCGCGCT
TTGGTGGTGAGCAATTGGGAGATGGCTAAAGAGTGTCTCACTACACATGA
CAGAGTCTTTGCCAGCCGTCCAAAAGCTCTTGTCGCAGAGATATTAGGCT
TCAACTTTTCCATGTTTGGTTTCAGCCCATATGGTCCCCATTGGCGCCAG
ATACGCAAGATAGCCACACTTGAGCTTCTCTCAAACCATCGGCTTGAGAA
GCTCAGCATGTTCGAGAAGGCGAGGTAAAGACTTGTTTGAAGGAGTTATA
TGAGTTTTGGGAACGTACGAACATTACAAAAGTTCGGATCATAATAACAC
AAGAAGGTATTGGTGGAGATGAACAAATGGTTTGAGGATGTACCCCTTAT
ACGATCTTAAGGGGTACGGTTGGACAAAGATGCATTCATCATCATCACAA
GAGGATACCGATCATGAAGGAGCATGGAAAGAGGAATTGACCAAATTTTT
GCTTTTAGTGGTAATTTCGTGGTGTCCGATCCCTGCCCGTTTGAAATGG
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