EY728779

Overview
NameEY728779
Unique NameEY728779
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length853
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: KTNA1_MACFA (Katanin p60 ATPase-containing subunit A1 OS=Macaca fascicularis GN=KATNA1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.242e-29
Identity = 86/237 (36.29%), Postives = 131/237 (55.27%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGL-------HQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHSXQELSAKSKGLYTLMRRLMNXDI 725
            P   KTL+A+AVA+E    F  V    L SK+ GESEK VR LF  AR  +P+ IF DEID + + RG  S+    S RV ++LLV++DG+            V V+AATN P  ID AL R  R ++ +Y+  P+   REE+ RI LR++  + DV++  +A   EG +GADI+ +CR+A++ A+   ++   +T +     IR++   E+H    +      L  + + +   DI
Sbjct:  251 PGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRG-TSEEHEASRRVKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGREELLRISLRELELADDVDLASIAENMEGYSGADITNVCRDASLMAMRRRIEG--LTPEE----IRNLSKEEMHMPTTMEDFEMALKKVSKSVSAADI 478          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: KTNA1_HUMAN (Katanin p60 ATPase-containing subunit A1 OS=Homo sapiens GN=KATNA1 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.242e-29
Identity = 86/237 (36.29%), Postives = 131/237 (55.27%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGL-------HQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHSXQELSAKSKGLYTLMRRLMNXDI 725
            P   KTL+A+AVA+E    F  V    L SK+ GESEK VR LF  AR  +P+ IF DEID + + RG  S+    S RV ++LLV++DG+            V V+AATN P  ID AL R  R ++ +Y+  P+   REE+ RI LR++  + DV++  +A   EG +GADI+ +CR+A++ A+   ++   +T +     IR++   E+H    +      L  + + +   DI
Sbjct:  251 PGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRG-TSEEHEASRRVKAELLVQMDGVGGTSENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGREELLRISLRELELADDVDLASIAENMEGYSGADITNVCRDASLMAMRRRIEG--LTPEE----IRNLSKEEMHMPTTMEDFEMALKKVSKSVSAADI 478          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: PRS6B_ASPNG (26S protease regulatory subunit 6B homolog OS=Aspergillus niger GN=tbpA PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.236e-29
Identity = 75/186 (40.32%), Postives = 107/186 (57.53%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVS-DRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREE---IFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEEN 581
            P   KT++ +AVA+    +F+ V G E   K++GE  + VR +F  AR N+P+IIF DEID +A  R     G      R++ +LL ++DG  Q  NV VI ATNR D +DPALLRPGR DR +    P+  DR E   IF     K+  S +V++  L   +E  +GA I+ I +EA + A+ +N
Sbjct:  209 PGTGKTMLVKAVANSTTASFIRVNGSEFVQKYLGEGPRMVRDVFRMARENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFEQSSNVKVIMATNRADTLDPALLRPGRLDRKIEF--PSLRDRRERRLIFSTIASKMSLSPEVDLDSLIVRNEPLSGAVIAAIMQEAGLRAVRKN 392          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: KTNA1_XENTR (Katanin p60 ATPase-containing subunit A1 OS=Xenopus tropicalis GN=katna1 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.236e-29
Identity = 78/191 (40.84%), Postives = 115/191 (60.21%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGL-------HQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLD 587
            P   KTL+A+AVA+E    F  +    L SK+ GESEK VR LF  AR  AP+ IF DEID + + RG  S+    S RV ++LLV++DG+            V V+AATN P  ID AL R  R ++ +Y+  P+   REE+ RI+L+++  + DVNI  +A   +G +GADI+ +CR+A++ A+   ++
Sbjct:  252 PGTGKTLLAKAVATECKTTFFNISSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRG-TSEEHEASRRVKAELLVQMDGVGGASENEDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGREELLRINLKELELADDVNIECIAENMDGYSGADITNVCRDASLMAMRRRIE 439          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: KTNA1_XENLA (Katanin p60 ATPase-containing subunit (Fragment) OS=Xenopus laevis GN=katna1 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.236e-29
Identity = 78/191 (40.84%), Postives = 115/191 (60.21%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGL-------HQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLD 587
            P   KTL+A+AVA+E    F  +    L SK+ GESEK VR LF  AR  AP+ IF DEID + + RG  S+    S RV ++LLV++DG+            V V+AATN P  ID AL R  R ++ +Y+  P+   REE+ RI+L+++  + DVNI  +A   +G +GADI+ +CR+A++ A+   ++
Sbjct:  248 PGTGKTLLAKAVATECKTTFFNISSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRG-TSEEHEASRRVKAELLVQMDGVGGASENEDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGREELLRINLKELELADDVNIECIAENMDGYSGADITNVCRDASLMAMRRRIE 435          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: KTNA1_MOUSE (Katanin p60 ATPase-containing subunit A1 OS=Mus musculus GN=Katna1 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.236e-29
Identity = 78/191 (40.84%), Postives = 114/191 (59.69%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGL-------HQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLD 587
            P   KTL+A+AVA+E    F  V    L SK+ GESEK VR LF  AR  +P+ IF DEID + + RG  S+    S R+ ++LLV++DG+            V V+AATN P  ID AL R  R ++ +Y+  P+   REE+ RI LR++  + DVN+  +A   EG +GADI+ +CR+A++ A+   ++
Sbjct:  251 PGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRG-TSEEHEASRRMKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGREELLRISLRELELADDVNLASIAENMEGYSGADITNVCRDASLMAMRRRIE 438          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: VPS4_YEAST (Vacuolar protein sorting-associated protein 4 OS=Saccharomyces cerevisiae GN=VPS4 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.612e-28
Identity = 71/183 (38.80%), Postives = 113/183 (61.75%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGL-HQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPC-SSDVNIRELACLSEGCTGADISLICREAAISAIEE 578
            P   K+ +A+AVA+EA   F +V   +L SKW+GESEK V+ LFA AR N PSIIF DE+D L   RG+       S R+ ++LLV+++G+ +    V V+ ATN P ++D A+ R  RF+R +Y+  P+   R  +F I++   PC  +  + R L  ++EG +G+DI+++ ++A +  I +
Sbjct:  175 PGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGEGES--EASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 353          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: SPG7_RAT (Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.612e-28
Identity = 76/177 (42.94%), Postives = 105/177 (59.32%), Query Frame = 3
Query:    9 PLGF*CLVLPXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVS--VSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLR--KIPCSSDVNIRELACLSEGCTG 527
            P G   L  P C KTL+A+AVA+EA + FLA+ GPE      G     VRSLF +ARA AP I++ DEID +   R     G S    ++ ++QLLVE+DG+    +V V+A+TNR D +D AL+RPGR DR +++  P   +R EIF  HL+  K+   S    + LA L+ G +G
Sbjct:  342 PKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTSMSGFSNTEEEQTLNQLLVEMDGMGTADHVIVLASTNRADVLDNALMRPGRLDRHVFIDLPTLQERREIFEQHLKGLKLTQPSSFYSQRLAELTPGFSG 518          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: SPAST_DROPS (Spastin OS=Drosophila pseudoobscura pseudoobscura GN=spas PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.106e-28
Identity = 82/212 (38.68%), Postives = 125/212 (58.96%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVN---VTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRK--IPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHS 656
            P   KTL+ARAVA+E    FL +    L SK+VG+ EK VR+LFA AR   PSIIF DE+D L + R   S     S R+ ++ LVE DGL    +   + V+AATNRP ++D A LR  RF + +YV  P+E  RE +    L+K   P  +D  +R L+ +++G +G+D++ + ++AA+  I E L+  ++    +  A+RH+   + H+
Sbjct:  555 PGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHLQPSIIFIDEVDSLLSER--SSGEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTDA-LRRLSKITDGYSGSDLTALAKDAALEPIRE-LNVEQVKCLDI-NAMRHITEKDFHN 759          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: SPAST_DROPE (Spastin OS=Drosophila persimilis GN=spas PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.106e-28
Identity = 82/212 (38.68%), Postives = 125/212 (58.96%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVN---VTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRK--IPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHS 656
            P   KTL+ARAVA+E    FL +    L SK+VG+ EK VR+LFA AR   PSIIF DE+D L + R   S     S R+ ++ LVE DGL    +   + V+AATNRP ++D A LR  RF + +YV  P+E  RE +    L+K   P  +D  +R L+ +++G +G+D++ + ++AA+  I E L+  ++    +  A+RH+   + H+
Sbjct:  555 PGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHLQPSIIFIDEVDSLLSER--SSGEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTDA-LRRLSKITDGYSGSDLTALAKDAALEPIRE-LNVEQVKCLDI-NAMRHITEKDFHN 759          
The following BLAST results are available for this feature:
BLAST of EY728779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 382
Match NameE-valueIdentityDescription
KTNA1_MACFA4.242e-2936.29Katanin p60 ATPase-containing subunit A1 OS=Macaca... [more]
KTNA1_HUMAN4.242e-2936.29Katanin p60 ATPase-containing subunit A1 OS=Homo s... [more]
PRS6B_ASPNG7.236e-2940.3226S protease regulatory subunit 6B homolog OS=Aspe... [more]
KTNA1_XENTR7.236e-2940.84Katanin p60 ATPase-containing subunit A1 OS=Xenopu... [more]
KTNA1_XENLA7.236e-2940.84Katanin p60 ATPase-containing subunit (Fragment) O... [more]
KTNA1_MOUSE7.236e-2940.84Katanin p60 ATPase-containing subunit A1 OS=Mus mu... [more]
VPS4_YEAST1.612e-2838.80Vacuolar protein sorting-associated protein 4 OS=S... [more]
SPG7_RAT1.612e-2842.94Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1[more]
SPAST_DROPS2.106e-2838.68Spastin OS=Drosophila pseudoobscura pseudoobscura ... [more]
SPAST_DROPE2.106e-2838.68Spastin OS=Drosophila persimilis GN=spas PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-008-E03-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728779 ID=EY728779; Name=EY728779; organism=Citrus sinensis; type=EST; length=853bp
CCACGCGTCCGCTGGGATTTTGATGTTTGGTCCTCCCGNGTTGTAGCAAA
ACCCTCATGGCACGTGCAGTAGCTTCAGAAGCAGGGCTGAACTTCCTTGC
AGTGAAGGGTCCAGAGCTTTTTAGCAAATGGGTTGGTGAATCCGAGAAAG
CAGTGCGATCGCTGTTTGCAAAGGCTAGGGCCAATGCTCCATCAATCATA
TTTTTTGATGAAATTGATGGTCTTGCTGCCATTCGTGGGAAGGAAAGTGA
TGGGGTTTCTGTTTCTGATCGGGTTATGAGTCAACTTCTTGTTGAATTGG
ATGGCCTGCATCAAAGAGTTAATGTTACTGTTATTGCTGCTACAAATCGA
CCAGACAAGATTGATCCTGCCCTGTTGCGACCAGGACGCTTTGACAGGCT
TCTGTATGTGGGACCTCCAAATGAGACTGACCGAGAAGAAATATTCCGAA
TTCATTTGCGTAAAATTCCTTGCAGCTCTGATGTAAACATAAGAGAACTG
GCTTGCCTCTCAGAAGGCTGTACTGGGGCTGATATATCATTAATCTGCCG
AGAGGCAGCCATTTCAGCCATTGAGGAGAACCTCGATGCATCAAGAATAA
CAATGCAACACTTGAAGACTGCAATTAGACACGTACAACCATCGGAGATT
CATTCTTANCAGGAGCTCTCAGCTAAGTCCAAAGGCTTGTACACTCTAAT
GCGGAGGCTGATGAATCANGATATCACCTGCGCCCGAATAAATCATCGGA
TTGAATATGTGGTCCCTAATAAATCCATNGCACTGTTCCTATGTCGCTTC
CCAGCAGGCCTCTCACAATCAAAGTCTGGTTCAACCGGGTACTAAAGTTG
TCT
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