EY728779

Overview
NameEY728779
Unique NameEY728779
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length853
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: SPAST_DROVI (Spastin OS=Drosophila virilis GN=spas PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.361e-26
Identity = 79/211 (37.44%), Postives = 121/211 (57.35%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGL---HQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVN-IRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHS 656
            P   KTL+ARAVA+E    FL +    L SK+VG+ EK VR+LFA AR   PSIIF DE+D L + R   S+    S R+ ++ LVE DGL    +   + V+AATNRP ++D A LR  RF + +YV  P    RE +    L+K     D   +  LA +++G +G+D++ + ++AA+  I E L+  ++    + +A+R +   + H+
Sbjct:  536 PGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSER--SSNEHEASRRLKTEFLVEFDGLPGNPEGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPGVQTRELLLSRLLQKQGSPLDTEALARLAKITDGYSGSDLTALAKDAALEPIRE-LNVEQVKCLDI-SAMRPITEKDFHN 740          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: SPAST_CAEEL (Probable spastin homolog spas-1 OS=Caenorhabditis elegans GN=spas-1 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 3.361e-26
Identity = 79/219 (36.07%), Postives = 121/219 (55.25%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVN--VTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDV---NIRELACLSEGCTGADISLICREAAISAIEENLDASRITM-----------QHLKTAIRHVQPS 644
            P   KTL+A+AVA E+   F  +    L SKWVG+SEK +R LF  AR   PSIIF DEID +   R ++     VS R+ ++ LV+ DG     +  + VI ATNRP ++D A+LR  RF + + +  P+E  R+E+    L+K      +   +IR +A  + G + +D+  +C+EAA+  I E +D S+++M               TA+R ++PS
Sbjct:  281 PGNGKTLLAKAVAGESKQMFFNISASSLTSKWVGDSEKTIRGLFQIARNAQPSIIFIDEIDSILCERSEKD--AEVSRRMKTEFLVQFDGATSSADDRILVIGATNRPHELDDAVLR--RFPKRIMLNLPDEEARKELITKTLKKHNMMDGLISSDIRYIASNTSGFSNSDLVALCKEAAMVPIRE-IDRSKLSMTDGEKIRKIRASDFDTALRTIRPS 494          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: NSF_DICDI (Vesicle-fusing ATPase OS=Dictyostelium discoideum GN=nsfA PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.361e-26
Identity = 79/228 (34.65%), Postives = 111/228 (48.68%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEA-GLNFLAVKGPELFSKWVGESEKAVRSLF--------AKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI----PCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDAS------------RITMQHLKTAIRHVQPS 644
            P   KTL+AR +     G     V GP + +K+VG+SE+ +R LF        AK   +   II FDE+D +   RG       V D V++QLL  +DG+    N+ VI  TNR D ID ALLRPGR +  + +  P+E  RE+IF+IH  K+        DVN+   A  +   +GA+I  + + AA  A    +D              ++  Q  K AI  V PS
Sbjct:  266 PGTGKTLIARQIGKMLNGREPKVVSGPSILNKYVGQSEENIRMLFRDAEIEQKAKGDDSGLHIIIFDELDAICKSRGSRQGDSGVGDSVVNQLLAMIDGVESLNNILVIGMTNRKDMIDEALLRPGRLEVHVEISLPDEHGREQIFKIHTAKMRDQNALDKDVNLANYAHTTRNYSGAEIEGVVKSAASYAFSRQVDTKNIKNVEIKPEDIKVCDQDFKRAITEVTPS 493          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: NSF2_DROME (Vesicle-fusing ATPase 2 OS=Drosophila melanogaster GN=Nsf2 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 3.361e-26
Identity = 73/198 (36.87%), Postives = 107/198 (54.04%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNF-LAVKGPELFSKWVGESEKAVRSLFAKARANAPS--------IIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI----PCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDA 590
            P   KTLMAR + +         V GP++  K+VGESE  +R LFA+A              II FDEID +   RG  +    V D V++QLL ++DG+ Q  N+ VI  TNR D ID ALLRPGR +  + +  PNE  R +I  IH +++      +SDV+  E+A  ++  +GA++  + R A  +A+   + A
Sbjct:  267 PGTGKTLMARQIGTMLNAREPKIVNGPQILDKYVGESEANIRRLFAEAEEEEKRLGPNSGLHIIIFDEIDAICKARGSVAGNSGVHDTVVNQLLAKIDGVEQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEISLPNEQGRVQILNIHTKRMRDFNKIASDVDNNEIAAKTKNFSGAELEGLVRAAQSTAMNRLIKA 464          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: SPAST_DROMO (Spastin OS=Drosophila mojavensis GN=spas PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.390e-26
Identity = 79/211 (37.44%), Postives = 121/211 (57.35%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGL---HQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVN-IRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHS 656
            P   KTL+ARAVA+E    FL +    L SK+VG+ EK VR+LFA AR   PSIIF DE+D L + R   S+    S R+ ++ LVE DGL    +   + V+AATNRP ++D A LR  RF + +YV  P    RE +    L+K     D   +  LA +++G +G+D++ + ++AA+  I E L+  ++    + +A+R +   + H+
Sbjct:  532 PGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHLQPSIIFIDEVDSLLSER--SSNEHEASRRLKTEFLVEFDGLPGNPEGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPEVQTRELLLSRLLQKQGSPLDTEALARLAKITDGYSGSDLTALAKDAALEPIRE-LNVEQVKCLDI-SAMRPITEKDFHN 736          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: FIGL1_RAT (Fidgetin-like protein 1 OS=Rattus norvegicus GN=Fignl1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.734e-26
Identity = 78/217 (35.94%), Postives = 116/217 (53.46%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSD-RVMSQLLVELDG--LHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEI-FRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQ----------HLKTAIRHVQPS 644
            P   KTL+ + +AS++G  F ++    L SKWVGE EK VR+LFA AR   P++IF DEID L + RG   DG   S  R+ ++ LV+LDG        + V+ ATNRP +ID A  R  R  + LY+  P  + R++I   +  ++  C +D     +   S+G +GAD++ +CREA++  I     A   T+             + A R V+PS
Sbjct:  446 PGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRG---DGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVVNLMSKEQCCLTDEETELVVQQSDGFSGADMTQLCREASLGPIRSLHTADIATISPDQVRPIAYIDFENAFRTVRPS 657          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: FIGL1_MOUSE (Fidgetin-like protein 1 OS=Mus musculus GN=Fignl1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.734e-26
Identity = 72/183 (39.34%), Postives = 106/183 (57.92%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSD-RVMSQLLVELDG--LHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIF-RIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAI 572
            P   KTL+ + +AS++G  F ++    L SKWVGE EK VR+LFA AR   P++IF DEID L + RG   DG   S  R+ ++ LV+LDG        + V+ ATNRP +ID A  R  R  + LY+  P  + R++I   +  ++  C SD     +   S+G +GAD++ +CREA++  I
Sbjct:  452 PGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRG---DGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVGNLMSKEQCCLSDEETDLVVQQSDGFSGADMTQLCREASLGPI 629          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: ATD1A_DANRE (ATPase family AAA domain-containing protein 1-A OS=Danio rerio GN=atad1a PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 5.734e-26
Identity = 69/183 (37.70%), Postives = 103/183 (56.28%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVN--VTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEE 578
            P C KTL+A+A A  +G  F+ ++   L  KW GES+K   ++F+ A    P IIF DEID    +R + S     +  + +Q +   DGL    N  V V+ ATNRP  +D A+LR  R     +VG PN   REEI R+ L     S+ +N++E+A  SEG +G+D+  +CR+AA+  + +
Sbjct:  138 PGCGKTLIAKATAKASGCRFINLQASTLTDKWYGESQKLTAAVFSLAVKIQPCIIFLDEIDSF--LRNRSSMDHEATAMMKAQFMSLWDGLDTGENSQVMVMGATNRPQDVDAAILR--RMPTAFHVGLPNAAQREEILRLILSGENLSNAINLKEIASQSEGYSGSDLKELCRDAAMYRVRD 316          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: YMEL1_RAT (ATP-dependent metalloprotease YME1L1 OS=Rattus norvegicus GN=Yme1l1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.489e-26
Identity = 74/203 (36.45%), Postives = 110/203 (54.19%), Query Frame = 3
Query:    9 PLGF*CLVLPXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLK 617
            P G   +  P   KTL+ARAVA EA + F    G E    +VG     +R+LF +A+ANAP +IF DE+D +   R  E      S + + QLL E+DG      V +I ATN P+ +D AL+RPGRFD  + V  P+   R EI + +L KI     V+   +A  + G +GA++  +  +AA+ A  +  +   +TM+ L+
Sbjct:  314 PKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKR-IEFPMHPYSRQTIIQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDKSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKE--MVTMKELE 513          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: ATAD1_RAT (ATPase family AAA domain-containing protein 1 OS=Rattus norvegicus GN=Atad1 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.179e-25
Identity = 74/218 (33.94%), Postives = 115/218 (52.75%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGL--HQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHSXQELSAKSK 683
            P C KTL+A+A A EAG  F+ ++   L  KW GES+K   ++F+ A    PSIIF DEID    +R + S     +  + +Q +   DGL       V V+ ATNRP  +D A++R  R     ++  P    RE I ++ L+       V++ E+A  ++G +G+D+  +CR+AA+  + E ++ S     H +  IR VQ  ++H   E   KSK
Sbjct:  135 PGCGKTLIAKATAKEAGCRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSF--LRNRSSSDHEATAMMKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMR--RMPTRFHINQPALKQREAILKLILKNENVDRHVDLLEVAQETDGFSGSDLKEMCRDAALLCVREYVN-STSEESHDEDEIRPVQQQDLHRAIEKMKKSK 347          
The following BLAST results are available for this feature:
BLAST of EY728779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 382
Match NameE-valueIdentityDescription
SPAST_DROVI3.361e-2637.44Spastin OS=Drosophila virilis GN=spas PE=3 SV=1[more]
SPAST_CAEEL3.361e-2636.07Probable spastin homolog spas-1 OS=Caenorhabditis ... [more]
NSF_DICDI3.361e-2634.65Vesicle-fusing ATPase OS=Dictyostelium discoideum ... [more]
NSF2_DROME3.361e-2636.87Vesicle-fusing ATPase 2 OS=Drosophila melanogaster... [more]
SPAST_DROMO4.390e-2637.44Spastin OS=Drosophila mojavensis GN=spas PE=3 SV=1[more]
FIGL1_RAT5.734e-2635.94Fidgetin-like protein 1 OS=Rattus norvegicus GN=Fi... [more]
FIGL1_MOUSE5.734e-2639.34Fidgetin-like protein 1 OS=Mus musculus GN=Fignl1 ... [more]
ATD1A_DANRE5.734e-2637.70ATPase family AAA domain-containing protein 1-A OS... [more]
YMEL1_RAT7.489e-2636.45ATP-dependent metalloprotease YME1L1 OS=Rattus nor... [more]
ATAD1_RAT2.179e-2533.94ATPase family AAA domain-containing protein 1 OS=R... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-008-E03-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728779 ID=EY728779; Name=EY728779; organism=Citrus sinensis; type=EST; length=853bp
CCACGCGTCCGCTGGGATTTTGATGTTTGGTCCTCCCGNGTTGTAGCAAA
ACCCTCATGGCACGTGCAGTAGCTTCAGAAGCAGGGCTGAACTTCCTTGC
AGTGAAGGGTCCAGAGCTTTTTAGCAAATGGGTTGGTGAATCCGAGAAAG
CAGTGCGATCGCTGTTTGCAAAGGCTAGGGCCAATGCTCCATCAATCATA
TTTTTTGATGAAATTGATGGTCTTGCTGCCATTCGTGGGAAGGAAAGTGA
TGGGGTTTCTGTTTCTGATCGGGTTATGAGTCAACTTCTTGTTGAATTGG
ATGGCCTGCATCAAAGAGTTAATGTTACTGTTATTGCTGCTACAAATCGA
CCAGACAAGATTGATCCTGCCCTGTTGCGACCAGGACGCTTTGACAGGCT
TCTGTATGTGGGACCTCCAAATGAGACTGACCGAGAAGAAATATTCCGAA
TTCATTTGCGTAAAATTCCTTGCAGCTCTGATGTAAACATAAGAGAACTG
GCTTGCCTCTCAGAAGGCTGTACTGGGGCTGATATATCATTAATCTGCCG
AGAGGCAGCCATTTCAGCCATTGAGGAGAACCTCGATGCATCAAGAATAA
CAATGCAACACTTGAAGACTGCAATTAGACACGTACAACCATCGGAGATT
CATTCTTANCAGGAGCTCTCAGCTAAGTCCAAAGGCTTGTACACTCTAAT
GCGGAGGCTGATGAATCANGATATCACCTGCGCCCGAATAAATCATCGGA
TTGAATATGTGGTCCCTAATAAATCCATNGCACTGTTCCTATGTCGCTTC
CCAGCAGGCCTCTCACAATCAAAGTCTGGTTCAACCGGGTACTAAAGTTG
TCT
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