EY728779

Overview
NameEY728779
Unique NameEY728779
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length853
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: ATAD1_MOUSE (ATPase family AAA domain-containing protein 1 OS=Mus musculus GN=Atad1 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.179e-25
Identity = 74/218 (33.94%), Postives = 115/218 (52.75%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGL--HQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHSXQELSAKSK 683
            P C KTL+A+A A EAG  F+ ++   L  KW GES+K   ++F+ A    PSIIF DEID    +R + S     +  + +Q +   DGL       V V+ ATNRP  +D A++R  R     ++  P    RE I ++ L+       V++ E+A  ++G +G+D+  +CR+AA+  + E ++ S     H +  IR VQ  ++H   E   KSK
Sbjct:  135 PGCGKTLIAKATAKEAGCRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSF--LRNRSSSDHEATAMMKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMR--RMPTRFHINQPALKQREAILKLILKNENVDRHVDLLEVAQETDGFSGSDLKEMCRDAALLCVREYVN-STSEESHDEDEIRPVQQQDLHRAIEKMKKSK 347          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: ATAD1_HUMAN (ATPase family AAA domain-containing protein 1 OS=Homo sapiens GN=ATAD1 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.179e-25
Identity = 74/218 (33.94%), Postives = 115/218 (52.75%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGL--HQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHSXQELSAKSK 683
            P C KTL+A+A A EAG  F+ ++   L  KW GES+K   ++F+ A    PSIIF DEID    +R + S     +  + +Q +   DGL       V V+ ATNRP  +D A++R  R     ++  P    RE I ++ L+       V++ E+A  ++G +G+D+  +CR+AA+  + E ++ S     H +  IR VQ  ++H   E   KSK
Sbjct:  135 PGCGKTLIAKATAKEAGCRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSF--LRNRSSSDHEATAMMKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMR--RMPTRFHINQPALKQREAILKLILKNENVDRHVDLLEVAQETDGFSGSDLKEMCRDAALLCVREYVN-STSEESHDEDEIRPVQQQDLHRAIEKMKKSK 347          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: NSF_CAEEL (Vesicle-fusing ATPase OS=Caenorhabditis elegans GN=nsf-1 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 3.717e-25
Identity = 76/198 (38.38%), Postives = 109/198 (55.05%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNF-LAVKGPELFSKWVGESEKAVRSLFAKA-----RANAPS---IIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI----PCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDA 590
            P   KTLMAR +           V GP++  K+VGESE  VR LFA A     R  A S   II FDEID +   RG  +   SV D V++QLL ++DG+ Q  N+ VI  TNR D ID ALLRPGR +  + V  P+ET R +I +IH  ++        +V++ +++  ++  +GA++  + R A  SA+   + A
Sbjct:  339 PGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESESNVRKLFADAEEEWRRCGANSGLHIIIFDEIDAICKQRGSMAGSSSVHDTVVNQLLSKMDGVEQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEVSLPDETGRLQILKIHTARMREYNKMDPNVDLEDISKRTKNFSGAELEGLVRAAQSSAMNRLVKA 536          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: SPAST_XENLA (Spastin OS=Xenopus laevis GN=spast PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.854e-25
Identity = 72/184 (39.13%), Postives = 109/184 (59.24%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVN--VTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEE 578
            P   KT++A+AVA+E+   F  +    L SK+VGE EK VR+LF+ AR   PSIIF DE+D L   R +       S R+ ++ L+E DG+    +  V V+ ATNRP ++D A+LR  RF + +YV  PNE  R  + +  L K     S+  + +L+ L+EG +G+DI+ + ++AA+  I E
Sbjct:  368 PGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFSVARELQPSIIFIDEVDSLLCERREGEH--DASRRLKTEFLIEFDGVQSGGDDRVLVMGATNRPQELDDAVLR--RFTKRVYVALPNEETRLVLLKNLLSKQGNPLSEKELTQLSRLTEGYSGSDITALAKDAALGPIRE 547          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: SPAST_PIG (Spastin (Fragment) OS=Sus scrofa GN=SPAST PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 4.854e-25
Identity = 79/228 (34.65%), Postives = 123/228 (53.95%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVN--VTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-----SDVNIRELACLSEGCTGADISLICREAAISAIEE-------NLDASRIT-------MQHLKTAIRHVQPSEIHS 656
            P   KT++A+AVA+E+   F  +    L SK+VGE EK VR+LFA AR   PSIIF DE+D L  +R +       S R+ ++ L+E DG+    +  V V+ ATNRP ++D A+LR  RF + +YV  PNE  R     + L+ + C      +   + +LA L++G +G+D++ + ++AA+  I E       N+ AS +         + LK   R V P  + +
Sbjct:  381 PGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSL--LRERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETR----LLLLKNLLCKQGSPLTQKELAQLARLTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEA 600          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: FIGL1_CAEEL (Fidgetin-like protein 1 OS=Caenorhabditis elegans GN=figl-1 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.854e-25
Identity = 78/217 (35.94%), Postives = 117/217 (53.92%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVN--VTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDV---NIRELACLSEGCTGADISLICREAAISAIE---------ENLDASRITMQHLKTAIRHVQPS 644
            P   KT++ R VAS+    F  +    L SKWVGE EK VR+LF+ AR   PS+IF DEID L + R  ES+  S S R+ ++ LV+LDG++   +  + V+ ATNRP ++D A  R  RF + LY+  P    R +I +  L  +    D+   N+  +  L++G +GAD+  +C EAA+  I          +  D   +T+     A R V+P+
Sbjct:  358 PGTGKTMIGRCVASQCKATFFNISASSLTSKWVGEGEKLVRALFSVARLKLPSVIFIDEIDSLLSSR-SESEHES-SRRIKTEFLVQLDGVNTAPDERLLVLGATNRPQELDEAARR--RFQKRLYIALPEPESRTQIVQNLL--VGTRHDITNHNLERIRELTDGYSGADMRQLCTEAAMGPIRDIGDDIETIDKDDIRAVTVMDFAEAARVVRPT 568          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: VPS4B_MOUSE (Vacuolar protein sorting-associated protein 4B OS=Mus musculus GN=Vps4b PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 1.081e-24
Identity = 68/184 (36.96%), Postives = 109/184 (59.24%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLN-FLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-QRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEE 578
            P   K+ +A+AVA+EA  + F ++   +L SKW+GESEK V++LF  AR N PSIIF DEID L   R +       + R+ ++ LV++ G+      + V+ ATN P  +D A+ R  RF++ +Y+  P    R  +FR+HL     S ++ + +EL   ++G +GADIS+I R+A +  + +
Sbjct:  176 PGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENES--EAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: VPS4B_HUMAN (Vacuolar protein sorting-associated protein 4B OS=Homo sapiens GN=VPS4B PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 1.081e-24
Identity = 68/184 (36.96%), Postives = 109/184 (59.24%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLN-FLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-QRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEE 578
            P   K+ +A+AVA+EA  + F ++   +L SKW+GESEK V++LF  AR N PSIIF DEID L   R +       + R+ ++ LV++ G+      + V+ ATN P  +D A+ R  RF++ +Y+  P    R  +F++HL     S ++ + REL   ++G +GADIS+I R+A +  + +
Sbjct:  176 PGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENES--EAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 355          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: VPS4B_BOVIN (Vacuolar protein sorting-associated protein 4B OS=Bos taurus GN=VPS4B PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.081e-24
Identity = 68/184 (36.96%), Postives = 109/184 (59.24%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLN-FLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-QRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEE 578
            P   K+ +A+AVA+EA  + F ++   +L SKW+GESEK V++LF  AR N PSIIF DEID L   R +       + R+ ++ LV++ G+      + V+ ATN P  +D A+ R  RF++ +Y+  P    R  +F++HL     S ++ + R+L   +EG +GADIS+I R+A +  + +
Sbjct:  176 PGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENES--EAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFKLHLGTTQNSLTEADFRDLGKKTEGYSGADISIIVRDALMQPVRK 355          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: SPAST_XENTR (Spastin OS=Xenopus tropicalis GN=spast PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.412e-24
Identity = 71/184 (38.59%), Postives = 109/184 (59.24%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVN--VTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEE 578
            P   KT++A+AVA+E+   F  +    L SK+VGE EK VR+LF+ AR   PSIIF DE+D L   R +       S R+ ++ L+E DG+    +  V V+ ATNRP ++D A+LR  RF + +YV  PNE  R  + +  L K     ++  + +L+ L+EG +G+DI+ + ++AA+  I E
Sbjct:  371 PGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFSVARELQPSIIFIDEVDSLLCERREGEH--DASRRLKTEFLIEFDGVQSGGDDRVLVMGATNRPQELDDAVLR--RFTKRVYVSLPNEETRLLLLKNLLSKQGNPLNEKELTQLSRLTEGYSGSDITALAKDAALGPIRE 550          
The following BLAST results are available for this feature:
BLAST of EY728779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 382
Match NameE-valueIdentityDescription
ATAD1_MOUSE2.179e-2533.94ATPase family AAA domain-containing protein 1 OS=M... [more]
ATAD1_HUMAN2.179e-2533.94ATPase family AAA domain-containing protein 1 OS=H... [more]
NSF_CAEEL3.717e-2538.38Vesicle-fusing ATPase OS=Caenorhabditis elegans GN... [more]
SPAST_XENLA4.854e-2539.13Spastin OS=Xenopus laevis GN=spast PE=2 SV=1[more]
SPAST_PIG4.854e-2534.65Spastin (Fragment) OS=Sus scrofa GN=SPAST PE=2 SV=... [more]
FIGL1_CAEEL4.854e-2535.94Fidgetin-like protein 1 OS=Caenorhabditis elegans ... [more]
VPS4B_MOUSE1.081e-2436.96Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4B_HUMAN1.081e-2436.96Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4B_BOVIN1.081e-2436.96Vacuolar protein sorting-associated protein 4B OS=... [more]
SPAST_XENTR1.412e-2438.59Spastin OS=Xenopus tropicalis GN=spast PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-008-E03-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728779 ID=EY728779; Name=EY728779; organism=Citrus sinensis; type=EST; length=853bp
CCACGCGTCCGCTGGGATTTTGATGTTTGGTCCTCCCGNGTTGTAGCAAA
ACCCTCATGGCACGTGCAGTAGCTTCAGAAGCAGGGCTGAACTTCCTTGC
AGTGAAGGGTCCAGAGCTTTTTAGCAAATGGGTTGGTGAATCCGAGAAAG
CAGTGCGATCGCTGTTTGCAAAGGCTAGGGCCAATGCTCCATCAATCATA
TTTTTTGATGAAATTGATGGTCTTGCTGCCATTCGTGGGAAGGAAAGTGA
TGGGGTTTCTGTTTCTGATCGGGTTATGAGTCAACTTCTTGTTGAATTGG
ATGGCCTGCATCAAAGAGTTAATGTTACTGTTATTGCTGCTACAAATCGA
CCAGACAAGATTGATCCTGCCCTGTTGCGACCAGGACGCTTTGACAGGCT
TCTGTATGTGGGACCTCCAAATGAGACTGACCGAGAAGAAATATTCCGAA
TTCATTTGCGTAAAATTCCTTGCAGCTCTGATGTAAACATAAGAGAACTG
GCTTGCCTCTCAGAAGGCTGTACTGGGGCTGATATATCATTAATCTGCCG
AGAGGCAGCCATTTCAGCCATTGAGGAGAACCTCGATGCATCAAGAATAA
CAATGCAACACTTGAAGACTGCAATTAGACACGTACAACCATCGGAGATT
CATTCTTANCAGGAGCTCTCAGCTAAGTCCAAAGGCTTGTACACTCTAAT
GCGGAGGCTGATGAATCANGATATCACCTGCGCCCGAATAAATCATCGGA
TTGAATATGTGGTCCCTAATAAATCCATNGCACTGTTCCTATGTCGCTTC
CCAGCAGGCCTCTCACAATCAAAGTCTGGTTCAACCGGGTACTAAAGTTG
TCT
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