EY728779

Overview
NameEY728779
Unique NameEY728779
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length853
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: KATL2_XENTR (Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus tropicalis GN=katnal2 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.412e-24
Identity = 72/193 (37.31%), Postives = 114/193 (59.07%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGV-SVSDRVMSQLLVELDGLHQRVN-VTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIR------ELACLSEGCTGADISLICREAAISAIEENLDA 590
            P   KTL+A+AVA+E    F  +    + SKW G+SEK VR LF  AR +APS IF DE++ + + RG    G    S R+ ++LLV++DGL +  + V V+AA+N P ++D A+LR  R ++ + V  P++  R+ + +  L  +  SS V +R       L   ++G +G+DI L+C+EAA+  + +  DA
Sbjct:  300 PGTGKTLLAKAVATECNTTFFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQRGTGPGGEHEGSRRMKTELLVQMDGLARSDDLVFVLAASNLPWELDYAMLR--RLEKRILVDLPSKEARQAMIQHWLPPVSNSSGVELRTDLDYSTLGAETDGYSGSDIRLVCKEAAMRPVRKIFDA 490          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: VPS4B_PONAB (Vacuolar protein sorting-associated protein 4B OS=Pongo abelii GN=VPS4B PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.845e-24
Identity = 68/184 (36.96%), Postives = 109/184 (59.24%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLN-FLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-QRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEE 578
            P   K+ +A+AVA+EA  + F ++   +L SKW+GESEK V++LF  AR N PSIIF DEID L   R +       + R+ ++ LV++ G+      + V+ ATN P  +D A+ R  RF++ +Y+  P    R  +F++HL     S ++ + REL   ++G +GADIS+I R+A +  + +
Sbjct:  176 PGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENES--EAARRIKTEFLVQMRGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 355          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: SPAST_CAEBR (Probable spastin homolog spas-1 OS=Caenorhabditis briggsae GN=spas-1 PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.845e-24
Identity = 77/218 (35.32%), Postives = 118/218 (54.13%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVN--VTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRK---IPCSSDVNIRELACLSEGCTGADISLICREAAISAIEE----NLDAS------RITMQHLKTAIRHVQPS 644
            P   KTL+A+AVA E+   F  +    L SKWVG+SEK +R LF  AR   PSIIF DEID +   R ++     VS R+ ++ LV+ DG     +  + VI ATNRP ++D A+LR  RF + + +  P+   R+E+    L+K   +   S  +IR +A  + G + +D+  +C+EAA+  + E     L  +      +I      TA+R ++PS
Sbjct:  311 PGNGKTLLAKAVAGESKQMFFNISASSLTSKWVGDSEKTIRGLFQIARNGQPSIIFIDEIDSILCERSEKD--AEVSRRMKTEFLVQFDGATSSPDDRILVIGATNRPYELDDAVLR--RFPKRIMLNLPDTEARKELITNTLKKHDMMDGLSSSDIRYIASNTSGFSNSDLVALCKEAAMVPVREIHRSKLSVTDGDKIRKIRASDFDTALRTIRPS 524          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: SPAST_RAT (Spastin OS=Rattus norvegicus GN=Spast PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.409e-24
Identity = 78/228 (34.21%), Postives = 122/228 (53.51%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVN--VTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-----SDVNIRELACLSEGCTGADISLICREAAISAIEE-------NLDASRIT-------MQHLKTAIRHVQPSEIHS 656
            P   KT++A+AVA+E+   F  +    L SK+VGE EK VR+LFA AR   PSIIF DE+D L   R +       S R+ ++ L+E DG+    +  V V+ ATNRP ++D A+LR  RF + +YV  PNE  R     + L+ + C      +   + +LA +++G +G+D++ + ++AA+  I E       N+ AS +         + LK   R V P  + +
Sbjct:  349 PGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEH--DASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETR----LLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEA 568          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: SPAST_MOUSE (Spastin OS=Mus musculus GN=Spast PE=2 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 2.409e-24
Identity = 78/228 (34.21%), Postives = 122/228 (53.51%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVN--VTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-----SDVNIRELACLSEGCTGADISLICREAAISAIEE-------NLDASRIT-------MQHLKTAIRHVQPSEIHS 656
            P   KT++A+AVA+E+   F  +    L SK+VGE EK VR+LFA AR   PSIIF DE+D L   R +       S R+ ++ L+E DG+    +  V V+ ATNRP ++D A+LR  RF + +YV  PNE  R     + L+ + C      +   + +LA +++G +G+D++ + ++AA+  I E       N+ AS +         + LK   R V P  + +
Sbjct:  382 PGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEH--DASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETR----LLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEA 601          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: SPAST_HUMAN (Spastin OS=Homo sapiens GN=SPAST PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.409e-24
Identity = 78/228 (34.21%), Postives = 122/228 (53.51%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVN--VTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-----SDVNIRELACLSEGCTGADISLICREAAISAIEE-------NLDASRIT-------MQHLKTAIRHVQPSEIHS 656
            P   KT++A+AVA+E+   F  +    L SK+VGE EK VR+LFA AR   PSIIF DE+D L   R +       S R+ ++ L+E DG+    +  V V+ ATNRP ++D A+LR  RF + +YV  PNE  R     + L+ + C      +   + +LA +++G +G+D++ + ++AA+  I E       N+ AS +         + LK   R V P  + +
Sbjct:  384 PGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEH--DASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETR----LLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEA 603          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: SPAST_CHICK (Spastin OS=Gallus gallus GN=SPAST PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.409e-24
Identity = 69/184 (37.50%), Postives = 107/184 (58.15%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQ--RVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEE 578
            P   KT++A+AVA+E+   F  +    L SK+VGE EK VR+LFA AR   PSIIF DE+D L   R +       S R+ ++ L+E DG+       + V+ ATNRP ++D A+LR  RF + +YV  PNE  R  + +  L K     +   + +LA +++G +G+D++ + ++AA+  I E
Sbjct:  381 PGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEH--DASRRLKTEFLIEFDGVQSSGEDRILVMGATNRPQELDDAVLR--RFTKRVYVSLPNEETRLILLKNLLSKQGSPLTQKELAQLARMTDGYSGSDLTALVKDAALGPIRE 560          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: SPAST_BOVIN (Spastin OS=Bos taurus GN=SPAST PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.409e-24
Identity = 78/228 (34.21%), Postives = 121/228 (53.07%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVN--VTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-----SDVNIRELACLSEGCTGADISLICREAAISAIEE-------NLDASRIT-------MQHLKTAIRHVQPSEIHS 656
            P   KT++A+AVA+E+   F  +    L SK+VGE EK VR+LFA AR   PSIIF DE+D L   R +       S R+ ++ L+E DG+    +  V V+ ATNRP ++D A+LR  RF + +YV  PNE  R     + L+ + C      +   + +LA ++ G +G+D++ + ++AA+  I E       N+ AS +         + LK   R V P  + +
Sbjct:  382 PGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEH--DASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFTKRVYVSLPNEETR----LLLLKNLLCKQGSPLTQKELAQLARMTNGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEA 601          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: SPAST_DANRE (Spastin OS=Danio rerio GN=spast PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 3.146e-24
Identity = 72/184 (39.13%), Postives = 106/184 (57.61%), Query Frame = 3
Query:   36 PXCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQ--RVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEE 578
            P   KT++A+AVA E+   F  +    L SK+VGE EK VR+LFA AR   PSIIF DEID L   R +       S R+ ++ L+E DG+       V V+ ATNRP ++D A+LR  RF + +YV  P E  R ++ +  L K     S   + +LA L++G +G+D++ + ++AA+  I E
Sbjct:  337 PGNGKTMLAKAVAMESNATFFNISAATLTSKYVGEGEKLVRALFAVARELQPSIIFIDEIDSLLCERREGEH--DASRRLKTEFLIEFDGVQSGGDERVLVMGATNRPQELDEAVLR--RFAKRIYVALPTEETRLKLLKNLLSKHRNPLSQKELSQLARLTDGYSGSDLTSLAKDAALGPIRE 516          
BLAST of EY728779 vs. ExPASy Swiss-Prot
Match: MPA_RHOER (Proteasome-associated ATPase OS=Rhodococcus erythropolis GN=mpa PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.109e-24
Identity = 69/162 (42.59%), Postives = 95/162 (58.64%), Query Frame = 3
Query:   36 PXCSKTLMARAVAS---------------EAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANA----PSIIFFDEIDGLAAIRGKESDGVS--VSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHL 458
            P C KTL+A+AVA+               +A   FL +KGPEL +K+VGE+E+ +R +F +AR  A    P I+FFDE+D +   RG    GVS  V   V+ QLL E+DG+    NV VI A+NR D IDPA+LRPGR D  + +  P+    ++IF  +L
Sbjct:  277 PGCGKTLIAKAVANSLAKKIAEARGQDSKDAKSYFLNIKGPELLNKFVGETERHIRMIFQRAREKASEGTPVIVFFDEMDSIFRTRGS---GVSSDVETTVVPQLLSEIDGVEGLENVIVIGASNREDMIDPAILRPGRLDVKIKIERPDAESAQDIFSKYL 435          
The following BLAST results are available for this feature:
BLAST of EY728779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 382
Match NameE-valueIdentityDescription
KATL2_XENTR1.412e-2437.31Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
VPS4B_PONAB1.845e-2436.96Vacuolar protein sorting-associated protein 4B OS=... [more]
SPAST_CAEBR1.845e-2435.32Probable spastin homolog spas-1 OS=Caenorhabditis ... [more]
SPAST_RAT2.409e-2434.21Spastin OS=Rattus norvegicus GN=Spast PE=2 SV=1[more]
SPAST_MOUSE2.409e-2434.21Spastin OS=Mus musculus GN=Spast PE=2 SV=3[more]
SPAST_HUMAN2.409e-2434.21Spastin OS=Homo sapiens GN=SPAST PE=1 SV=1[more]
SPAST_CHICK2.409e-2437.50Spastin OS=Gallus gallus GN=SPAST PE=2 SV=1[more]
SPAST_BOVIN2.409e-2434.21Spastin OS=Bos taurus GN=SPAST PE=2 SV=1[more]
SPAST_DANRE3.146e-2439.13Spastin OS=Danio rerio GN=spast PE=2 SV=2[more]
MPA_RHOER4.109e-2442.59Proteasome-associated ATPase OS=Rhodococcus erythr... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-008-E03-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728779 ID=EY728779; Name=EY728779; organism=Citrus sinensis; type=EST; length=853bp
CCACGCGTCCGCTGGGATTTTGATGTTTGGTCCTCCCGNGTTGTAGCAAA
ACCCTCATGGCACGTGCAGTAGCTTCAGAAGCAGGGCTGAACTTCCTTGC
AGTGAAGGGTCCAGAGCTTTTTAGCAAATGGGTTGGTGAATCCGAGAAAG
CAGTGCGATCGCTGTTTGCAAAGGCTAGGGCCAATGCTCCATCAATCATA
TTTTTTGATGAAATTGATGGTCTTGCTGCCATTCGTGGGAAGGAAAGTGA
TGGGGTTTCTGTTTCTGATCGGGTTATGAGTCAACTTCTTGTTGAATTGG
ATGGCCTGCATCAAAGAGTTAATGTTACTGTTATTGCTGCTACAAATCGA
CCAGACAAGATTGATCCTGCCCTGTTGCGACCAGGACGCTTTGACAGGCT
TCTGTATGTGGGACCTCCAAATGAGACTGACCGAGAAGAAATATTCCGAA
TTCATTTGCGTAAAATTCCTTGCAGCTCTGATGTAAACATAAGAGAACTG
GCTTGCCTCTCAGAAGGCTGTACTGGGGCTGATATATCATTAATCTGCCG
AGAGGCAGCCATTTCAGCCATTGAGGAGAACCTCGATGCATCAAGAATAA
CAATGCAACACTTGAAGACTGCAATTAGACACGTACAACCATCGGAGATT
CATTCTTANCAGGAGCTCTCAGCTAAGTCCAAAGGCTTGTACACTCTAAT
GCGGAGGCTGATGAATCANGATATCACCTGCGCCCGAATAAATCATCGGA
TTGAATATGTGGTCCCTAATAAATCCATNGCACTGTTCCTATGTCGCTTC
CCAGCAGGCCTCTCACAATCAAAGTCTGGTTCAACCGGGTACTAAAGTTG
TCT
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