EY728773

Overview
NameEY728773
Unique NameEY728773
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728773 vs. ExPASy Swiss-Prot
Match: PAT01_SOLTU (Patatin-01 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 7.652e-37
Identity = 88/226 (38.94%), Postives = 139/226 (61.50%), Query Frame = 2
Query:   11 VKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLETKDSDSGGTRTFDLVDGGVA-ANNPTLLAISHISKEMVKQNPQFRDKNPMDGRDMLVLSLGTGTAKK-ELKYNAAKASKWGIFEWIYEDSNTPILDIYSDGSSDIVDFHVSALFQSCGSKDNYLRIQDDTLTGDAASVDIATEENMQRLVETGTKLLKEQVSRVNLXT 682
            V + LT V I +FDIK  +PVIF+ ++  ++   +A++ DIC ST+AAPTYFPPHY  T ++ +G    F+LVDG VA   +P LL++S ++    +++P F     ++ + ML+LSLGTGT  + +  + A + +KWG  +W+       I  +    SS + D+++S +FQ   S++NYLR+Q++ LTG     D A+E NM+ L + G  LLK+ VS+ N  T
Sbjct:  144 VHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPTYFPPHYFAT-NTINGDKYEFNLVDGAVATVADPALLSVS-VATRRAQEDPAFASIRSLNYKKMLLLSLGTGTTSEFDKTHTAEETAKWGALQWM-----LVIQQMTEAASSYMTDYYLSTVFQDLHSQNNYLRVQENALTGTTTKADDASEANMELLAQVGENLLKKPVSKDNPET 362          
BLAST of EY728773 vs. ExPASy Swiss-Prot
Match: PAT17_SOLCD (Patatin-17 OS=Solanum cardiophyllum PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.705e-36
Identity = 92/226 (40.71%), Postives = 137/226 (60.62%), Query Frame = 2
Query:   11 VKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLETKDSDSGGTRTFDLVDGGVAA-NNPTLLAISHISKEMVKQNPQFRDKNPMDGRDMLVLSLGTGTAKK-ELKYNAAKASKWGIFEWIYEDSNTPILDIYSDGSSDIVDFHVSALFQSCGSKDNYLRIQDDTLTGDAASVDIATEENMQRLVETGTKLLKEQVSRVNLXT 682
            V + LT VVI +FDIK  +PVIF+ ++   +   +A++ DI  ST+AAPTYFPPHY  T  S+ G    F+LVDG VA   +P LL+IS ++  + +++P F     ++ + ML+LSLGTGT  + +  Y A +A+ W    W+       I  +    SS + D+++S  FQ+  SK+NYLR+Q++ LTG    +D A+E NM+ LV+ G  LLK+ VS  N  T
Sbjct:  143 VHQALTEVVISSFDIKTNKPVIFTKSNLANSPELDAKMYDISYSTAAAPTYFPPHYFVTNTSN-GDEYEFNLVDGAVATVADPALLSIS-VATRLAQKDPAFASIRSLNYKKMLLLSLGTGTTSEFDKTYTAKEAATWTAVHWMLV-----IQKMTDAASSYMTDYYLSTAFQALDSKNNYLRVQENALTGTTTEMDDASEANMELLVQVGENLLKKPVSEDNPET 361          
BLAST of EY728773 vs. ExPASy Swiss-Prot
Match: PATA2_SOLTU (Patatin group A-2 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.908e-36
Identity = 87/226 (38.50%), Postives = 138/226 (61.06%), Query Frame = 2
Query:   11 VKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLETKDSDSGGTRTFDLVDGGVA-ANNPTLLAISHISKEMVKQNPQFRDKNPMDGRDMLVLSLGTGTAKK-ELKYNAAKASKWGIFEWIYEDSNTPILDIYSDGSSDIVDFHVSALFQSCGSKDNYLRIQDDTLTGDAASVDIATEENMQRLVETGTKLLKEQVSRVNLXT 682
            V + LT V I +FDIK  +PVIF+ ++  ++   +A++ DIC S +AAPTYFPPHY  T ++ +G    F+LVDG VA   +P LL++S ++    +++P F     ++ + ML+LSLGTGT  + +  + A + +KWG  +W+       I  +    SS + D+++S +FQ   S++NYLR+Q++ LTG     D A+E NM+ L + G  LLK+ VS+ N  T
Sbjct:  144 VHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSAAAAPTYFPPHYFAT-NTINGDKYEFNLVDGAVATVADPALLSVS-VATRRAQEDPAFASIRSLNYKKMLLLSLGTGTTSEFDKTHTAEETAKWGALQWM-----LVIQQMTEAASSYMTDYYLSTVFQDLHSQNNYLRVQENALTGTTTKADDASEANMELLAQVGENLLKKPVSKDNPET 362          
BLAST of EY728773 vs. ExPASy Swiss-Prot
Match: PAT16_SOLTU (Patatin-16 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.960e-36
Identity = 87/226 (38.50%), Postives = 138/226 (61.06%), Query Frame = 2
Query:   11 VKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLETKDSDSGGTRTFDLVDGGVA-ANNPTLLAISHISKEMVKQNPQFRDKNPMDGRDMLVLSLGTGTAKK-ELKYNAAKASKWGIFEWIYEDSNTPILDIYSDGSSDIVDFHVSALFQSCGSKDNYLRIQDDTLTGDAASVDIATEENMQRLVETGTKLLKEQVSRVNLXT 682
            V + LT V I +FDIK  +PVIF+ ++  ++   +A++ DIC ST+AAPTYFPPHY  T ++ +G     +LVDG VA   +P LL++S ++    +++P F     ++ + ML+LSLGTGT  + +  + A + +KWG  +W+       I  +    SS + D+++S +FQ   S++NYLR+Q++ LTG     D A+E NM+ L + G  LLK+ VS+ N  T
Sbjct:  143 VHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPTYFPPHYFAT-NTINGDKYELNLVDGAVATVADPALLSVS-VATRRAQEDPAFASIRSLNYKKMLLLSLGTGTTSEFDKTHTAEETAKWGALQWM-----LVIQQMTEAASSYMTDYYLSTVFQDLHSQNNYLRVQENPLTGTTTKADDASEANMELLAQVGENLLKKPVSKDNPET 361          
The following BLAST results are available for this feature:
BLAST of EY728773 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
PAT01_SOLTU7.652e-3738.94Patatin-01 OS=Solanum tuberosum PE=2 SV=1[more]
PAT17_SOLCD1.705e-3640.71Patatin-17 OS=Solanum cardiophyllum PE=1 SV=1[more]
PATA2_SOLTU2.908e-3638.50Patatin group A-2 OS=Solanum tuberosum PE=2 SV=1[more]
PAT16_SOLTU4.960e-3638.50Patatin-16 OS=Solanum tuberosum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-008-D07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728773 ID=EY728773; Name=EY728773; organism=Citrus sinensis; type=EST; length=880bp
CACGCGTCCGGTGAAAGAGACTCTTACCAACGTGGTTATACCAACTTTTG
ACATCAAGCTTCTTCAACCAGTCATCTTCTCAACCACCGATGGAAAAGAG
AACGTTTTGAAGAATGCTCGGCTGGCTGATATATGCATCAGCACTTCTGC
AGCGCCCACTTACTTCCCACCTCACTACTTGGAGACTAAGGACAGTGACA
GTGGCGGAACCCGCACTTTTGATCTTGTTGACGGTGGAGTTGCTGCTAAT
AATCCTACCCTATTGGCAATAAGCCACATATCGAAGGAAATGGTGAAGCA
GAACCCCCAGTTCAGGGACAAAAACCCAATGGACGGTAGAGATATGCTGG
TACTATCACTAGGCACAGGTACAGCCAAGAAAGAATTGAAGTACAATGCA
GCCAAAGCCTCCAAGTGGGGCATTTTCGAATGGATCTATGAAGATAGCAA
TACCCCAATACTCGACATCTACTCTGATGGAAGCTCCGATATTGTTGATT
TCCATGTGTCTGCTCTCTTTCAATCCTGCGGAAGCAAGGACAACTACCTT
CGAATTCAGGACGACACGTTGACTGGTGATGCAGCATCTGTTGACATTGC
CACGGAGGAGAATATGCAAAGGCTTGTGGAAACTGGAACCAAGTTGTTGA
AGGAGCAGGTGTCGAGGGTGAACCTGNAGACTGGCAGATATGAAAAGGTT
GACGGAGAGGTCACAATTGAAAAACACTTGCTCGACTTGCCAAATTATCT
CTGAACAACTTAAGTCCGGCCGCGCCCATAATCCTTATATTGGAACTCGT
NTATTTGAGTAGGCATAGGATTCCGCTGCGTGTTTTATGTGTATCCCTCC
GACCAAGTGCTCCATTGGACCTCCCAATAG
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