EY728735

Overview
NameEY728735
Unique NameEY728735
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2505 contig Csv1_Contig2505:344..1177. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY728735 vs. ExPASy Swiss-Prot
Match: DOIAD_STRLV (2-deoxy-scyllo-inosamine dehydrogenase OS=Streptomyces lividus GN=livE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.629e-11
Identity = 50/158 (31.65%), Postives = 68/158 (43.04%), Query Frame = 2
Query:   47 PMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGAGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKEIGADNIV 520
            P+V GHE +G +  V      LV  D V  +   SC  C HC  G+  LC +++        G+ A  +  PA    +LP   SL      EPL+V ++A  R  + P   V I GAG IGL+  LA R  G       +    R   A  +G    V
Sbjct:   54 PVVPGHEWSGTVVDVNGADSGLVGVDVVG-DLTCSCGTCRHCAEGKPTLCGDLQELGFTR-DGACAEYMTIPAANLHRLPPGTSLRAACQVEPLAVALNAVDRLAVVPGEKVAITGAGGIGLLLALAVRQRGGEVTAFAEPVAERREAAAALGVSATV 209          
BLAST of EY728735 vs. ExPASy Swiss-Prot
Match: TERPD_PSESP (Probable alcohol dehydrogenase OS=Pseudomonas sp. GN=terPD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.658e-11
Identity = 58/226 (25.66%), Postives = 95/226 (42.04%), Query Frame = 2
Query:   47 PMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEM------------------------KFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRA-----NIGPETNVLIMGAGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKEIGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGLNKTCQQ 637
            P V+GHE +G++E VG  VK L PGD V +    SC  C  C+  R + C +                          FF       S+A    H       L D+  +E   +  PL  GV     A     ++    + L++G G +GL  ++AA+  G  RI++ +    +   A  +GA  ++      +++ E V++I +  G G D + +C GL    +Q
Sbjct:   34 PAVLGHEGSGIVEAVGPGVKHLKPGDAVVM-TFASCGHCASCEHERPSYCLDFGAQNYSAQRADGPVLLSQGDEVISGFFFGQSSFSSMAMAREHNLVKIDALVDDAPIE---LLGPLGCGVQTGAGAVMISLDVRAGRSFLVLGGGAVGLSAVMAAKLRGCSRIIVSEPSAAKREQALALGATEVIDPLN--ENLVERVQQITE--GQGCDYALECTGLVSVMEQ 251          
The following BLAST results are available for this feature:
BLAST of EY728735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 272
Match NameE-valueIdentityDescription
DOIAD_STRLV6.629e-1131.652-deoxy-scyllo-inosamine dehydrogenase OS=Streptom... [more]
TERPD_PSESP8.658e-1125.66Probable alcohol dehydrogenase OS=Pseudomonas sp. ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-007-H05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728735 ID=EY728735; Name=EY728735; organism=Citrus sinensis; type=EST; length=834bp
CCACGCGTCCGAGACCTTGAGGCTTGCCGATTTTGTAGTGAAAGAGCCTA
TGGTGATCGGGCATGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGCGAG
GTGAAGACTTTGGTGCCCGGTGACCGTGTGGCCCTGGAACCAGGGATCAG
CTGCTGGCGATGTGATCACTGCAAAGGAGGTCGATACAATTTGTGTCCAG
AGATGAAATTTTTTGCAACTCCGCCAGTTCATGGTTCTCTGGCTAATCAG
GTGGTGCATCCTGCAGACCTATGTTTTAAGCTGCCGGACAATGTGAGCCT
GGAGGAAGGGGCTATGTGTGAGCCCTTGAGTGTTGGTGTTCATGCTTGCC
GCCGTGCCAATATCGGTCCTGAGACAAATGTGCTTATCATGGGTGCAGGG
CCCATAGGACTTGTCACAATGCTAGCAGCTCGTGCTTTTGGAGCTCCTAG
AATTGTCATTGTGGATGTGGATGACTATCGTTTATCTGTTGCAAAGGAAA
TTGGTGCAGATAATATTGTTAAAGTTTCAACAAATTTGCAGGATATAGCT
GAAGAAGTGGAAAAGATACAGAAAGCCATGGGGACAGGAATAGATGTGAG
CTTTGATTGTGCAGGCCTTAACAAAACATGTCAACAGCACTGGGCGCCAC
TTGTGCAGGTGGTNAAAGTTGCTCGTGGGGGATGGGTCATCATGAAATGA
CTGTCCCACTCACTCCANCTGCTGGTAAGTGATTGGATTTGGCTTAAATA
AGGGCAAAAGGAATCTTGAACCAGGTGGCTGCCANGCGTGATGGACTGAT
GGGGATGCTAATGACTAGGTATGCTTTATGGTGG
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