EY728735

Overview
NameEY728735
Unique NameEY728735
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2505 contig Csv1_Contig2505:344..1177. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY728735 vs. ExPASy Swiss-Prot
Match: TDH_SHIFL (L-threonine 3-dehydrogenase OS=Shigella flexneri GN=tdh PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.275e-26
Identity = 72/192 (37.50%), Postives = 107/192 (55.73%), Query Frame = 2
Query:   47 PMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGAGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKEIGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAG 616
            PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC   +      P  G  A  +V PA   FK+PDN+S +  ++ +P    VH     ++  E +VL+ GAGPIG++    A+  GA  +VI DV++YRL +A+++G    V V+  NL D+  E+      M  G DV  + +G
Sbjct:   58 PMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRP--GCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEYRLELARKMGITRAVNVAKENLNDVMAEL-----GMTEGFDVGLEMSG 241          
BLAST of EY728735 vs. ExPASy Swiss-Prot
Match: TDH_SHIF8 (L-threonine 3-dehydrogenase OS=Shigella flexneri serotype 5b (strain 8401) GN=tdh PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.275e-26
Identity = 72/192 (37.50%), Postives = 107/192 (55.73%), Query Frame = 2
Query:   47 PMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGAGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKEIGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAG 616
            PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC   +      P  G  A  +V PA   FK+PDN+S +  ++ +P    VH     ++  E +VL+ GAGPIG++    A+  GA  +VI DV++YRL +A+++G    V V+  NL D+  E+      M  G DV  + +G
Sbjct:   58 PMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRP--GCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEYRLELARKMGITRAVNVAKENLNDVMAEL-----GMTEGFDVGLEMSG 241          
BLAST of EY728735 vs. ExPASy Swiss-Prot
Match: TDH_SHIBS (L-threonine 3-dehydrogenase OS=Shigella boydii serotype 4 (strain Sb227) GN=tdh PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.275e-26
Identity = 72/192 (37.50%), Postives = 107/192 (55.73%), Query Frame = 2
Query:   47 PMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGAGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKEIGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAG 616
            PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC   +      P  G  A  +V PA   FK+PDN+S +  ++ +P    VH     ++  E +VL+ GAGPIG++    A+  GA  +VI DV++YRL +A+++G    V V+  NL D+  E+      M  G DV  + +G
Sbjct:   58 PMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRP--GCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEYRLELARKMGITRAVNVAKENLNDVMAEL-----GMTEGFDVGLEMSG 241          
BLAST of EY728735 vs. ExPASy Swiss-Prot
Match: TDH_SHIB3 (L-threonine 3-dehydrogenase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=tdh PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.275e-26
Identity = 72/192 (37.50%), Postives = 107/192 (55.73%), Query Frame = 2
Query:   47 PMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGAGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKEIGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAG 616
            PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC   +      P  G  A  +V PA   FK+PDN+S +  ++ +P    VH     ++  E +VL+ GAGPIG++    A+  GA  +VI DV++YRL +A+++G    V V+  NL D+  E+      M  G DV  + +G
Sbjct:   58 PMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRP--GCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEYRLELARKMGITRAVNVAKENLNDVMAEL-----GMTEGFDVGLEMSG 241          
BLAST of EY728735 vs. ExPASy Swiss-Prot
Match: TDH_SHESM (L-threonine 3-dehydrogenase OS=Shewanella sp. (strain MR-4) GN=tdh PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.275e-26
Identity = 70/192 (36.46%), Postives = 108/192 (56.25%), Query Frame = 2
Query:   47 PMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGAGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKEIGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGL 619
            PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+ GR +LC            GS A  +V PA   FK+PD++S +  ++ +P    VH     ++  E +VLI GAGPIG++     R  GA  +VI DV++YRL +A+++GA   V V+  +L+D+ +E+      M  G DV  + +G+
Sbjct:   58 PMVVGHEYVGEVVDIGQEVRGFKIGDRVSGEGHITCGHCRNCRAGRTHLCRNTSGVGVNR-EGSFAEYLVIPAFNAFKIPDDISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVCRHVGARHVVITDVNEYRLELARKMGATRAVNVAQESLKDVMKEL-----GMTEGFDVGLEMSGV 242          
BLAST of EY728735 vs. ExPASy Swiss-Prot
Match: TDH_SHESA (L-threonine 3-dehydrogenase OS=Shewanella sp. (strain ANA-3) GN=tdh PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.275e-26
Identity = 70/192 (36.46%), Postives = 108/192 (56.25%), Query Frame = 2
Query:   47 PMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGAGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKEIGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGL 619
            PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+ GR +LC            GS A  +V PA   FK+PD++S +  ++ +P    VH     ++  E +VLI GAGPIG++     R  GA  +VI DV++YRL +A+++GA   V V+  +L+D+ +E+      M  G DV  + +G+
Sbjct:   58 PMVVGHEYVGEVVDIGQEVRGFKIGDRVSGEGHITCGHCRNCRAGRTHLCRNTSGVGVNR-EGSFAEYLVIPAFNAFKIPDDISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVCRHVGARHVVITDVNEYRLELARKMGATRAVNVAQESLKDVMKEL-----GMTEGFDVGLEMSGV 242          
BLAST of EY728735 vs. ExPASy Swiss-Prot
Match: TDH_SHELP (L-threonine 3-dehydrogenase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=tdh PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.275e-26
Identity = 69/192 (35.94%), Postives = 108/192 (56.25%), Query Frame = 2
Query:   47 PMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGAGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKEIGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGL 619
            PMV+GHE  G + ++G EV+    GDRV+ E  I+C  C +C+ GR +LC            G+ A  +V PA   FK+PD++S +  ++ +P    VH     ++  E +VLI GAGPIG++     R  GA  +VI DV++YRL +AK++GA   V V+   L+D+ +++      M  G DV  + +G+
Sbjct:   58 PMVVGHEYVGEVVEIGQEVRGFQIGDRVSGEGHITCGHCRNCRAGRTHLCRNTSGVGVNR-EGAFAEYLVIPAFNAFKIPDDISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVCRHVGARHVVITDVNEYRLELAKKMGATRAVNVAKEKLEDVMQDL-----GMTEGFDVGLEMSGV 242          
BLAST of EY728735 vs. ExPASy Swiss-Prot
Match: TDH_FRATN (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. novicida (strain U112) GN=tdh PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.275e-26
Identity = 68/196 (34.69%), Postives = 113/196 (57.65%), Query Frame = 2
Query:   47 PMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGAGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKEIGADNIVKVS--TNLQDIAEEVEKIQKAMG--TGIDVSFDCAGLN 622
            PM+ GHE AG +   G  V ++  GDRV+ E  + C +C +C+ G+ +LC +        V G+ A  +V PA   FK+PD++S +  +  +P+   +H     N+  E +VLI GAGPIGL+ +  AR  GA RIVI D+++YRL +A++ GA   + V+   N  ++ +++ K+   +G   G D+  + +G+N
Sbjct:   59 PMITGHEFAGEVVAKGDGVTSVDIGDRVSGEGHLVCGQCRNCRAGKRHLCRKTIGIGVN-VQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTALSFNLTGE-DVLITGAGPIGLMAVKIARFCGARRIVITDINEYRLQMARDFGATVALNVAPFKNQDELVKQMRKVMSDIGMTEGFDIGLEMSGIN 252          
BLAST of EY728735 vs. ExPASy Swiss-Prot
Match: TDH_ECOUT (L-threonine 3-dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=tdh PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.275e-26
Identity = 72/192 (37.50%), Postives = 107/192 (55.73%), Query Frame = 2
Query:   47 PMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGAGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKEIGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAG 616
            PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC   +      P  G  A  +V PA   FK+PDN+S +  ++ +P    VH     ++  E +VL+ GAGPIG++    A+  GA  +VI DV++YRL +A+++G    V V+  NL D+  E+      M  G DV  + +G
Sbjct:   58 PMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRP--GCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEYRLELARKMGITRAVNVAKENLNDVMTEL-----GMTEGFDVGLEMSG 241          
BLAST of EY728735 vs. ExPASy Swiss-Prot
Match: TDH_ECOSM (L-threonine 3-dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=tdh PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.275e-26
Identity = 72/192 (37.50%), Postives = 107/192 (55.73%), Query Frame = 2
Query:   47 PMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGAGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKEIGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAG 616
            PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC   +      P  G  A  +V PA   FK+PDN+S +  ++ +P    VH     ++  E +VL+ GAGPIG++    A+  GA  +VI DV++YRL +A+++G    V V+  NL D+  E+      M  G DV  + +G
Sbjct:   58 PMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRP--GCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEYRLELARKMGITRAVNVAKENLNDVMTEL-----GMTEGFDVGLEMSG 241          
The following BLAST results are available for this feature:
BLAST of EY728735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 272
Match NameE-valueIdentityDescription
TDH_SHIFL3.275e-2637.50L-threonine 3-dehydrogenase OS=Shigella flexneri G... [more]
TDH_SHIF83.275e-2637.50L-threonine 3-dehydrogenase OS=Shigella flexneri s... [more]
TDH_SHIBS3.275e-2637.50L-threonine 3-dehydrogenase OS=Shigella boydii ser... [more]
TDH_SHIB33.275e-2637.50L-threonine 3-dehydrogenase OS=Shigella boydii ser... [more]
TDH_SHESM3.275e-2636.46L-threonine 3-dehydrogenase OS=Shewanella sp. (str... [more]
TDH_SHESA3.275e-2636.46L-threonine 3-dehydrogenase OS=Shewanella sp. (str... [more]
TDH_SHELP3.275e-2635.94L-threonine 3-dehydrogenase OS=Shewanella loihica ... [more]
TDH_FRATN3.275e-2634.69L-threonine 3-dehydrogenase OS=Francisella tularen... [more]
TDH_ECOUT3.275e-2637.50L-threonine 3-dehydrogenase OS=Escherichia coli (s... [more]
TDH_ECOSM3.275e-2637.50L-threonine 3-dehydrogenase OS=Escherichia coli (s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-007-H05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728735 ID=EY728735; Name=EY728735; organism=Citrus sinensis; type=EST; length=834bp
CCACGCGTCCGAGACCTTGAGGCTTGCCGATTTTGTAGTGAAAGAGCCTA
TGGTGATCGGGCATGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGCGAG
GTGAAGACTTTGGTGCCCGGTGACCGTGTGGCCCTGGAACCAGGGATCAG
CTGCTGGCGATGTGATCACTGCAAAGGAGGTCGATACAATTTGTGTCCAG
AGATGAAATTTTTTGCAACTCCGCCAGTTCATGGTTCTCTGGCTAATCAG
GTGGTGCATCCTGCAGACCTATGTTTTAAGCTGCCGGACAATGTGAGCCT
GGAGGAAGGGGCTATGTGTGAGCCCTTGAGTGTTGGTGTTCATGCTTGCC
GCCGTGCCAATATCGGTCCTGAGACAAATGTGCTTATCATGGGTGCAGGG
CCCATAGGACTTGTCACAATGCTAGCAGCTCGTGCTTTTGGAGCTCCTAG
AATTGTCATTGTGGATGTGGATGACTATCGTTTATCTGTTGCAAAGGAAA
TTGGTGCAGATAATATTGTTAAAGTTTCAACAAATTTGCAGGATATAGCT
GAAGAAGTGGAAAAGATACAGAAAGCCATGGGGACAGGAATAGATGTGAG
CTTTGATTGTGCAGGCCTTAACAAAACATGTCAACAGCACTGGGCGCCAC
TTGTGCAGGTGGTNAAAGTTGCTCGTGGGGGATGGGTCATCATGAAATGA
CTGTCCCACTCACTCCANCTGCTGGTAAGTGATTGGATTTGGCTTAAATA
AGGGCAAAAGGAATCTTGAACCAGGTGGCTGCCANGCGTGATGGACTGAT
GGGGATGCTAATGACTAGGTATGCTTTATGGTGG
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