EY728692

Overview
NameEY728692
Unique NameEY728692
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length924
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728692 vs. ExPASy Swiss-Prot
Match: FLIF_BRUAB (Flagellar M-ring protein OS=Brucella abortus GN=fliF PE=3 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 3.033e-23
Identity = 70/186 (37.63%), Postives = 101/186 (54.30%), Query Frame = -1
Query:    1 MVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMETLAAADIAYTVEPNSGALLVKADDVARARMKLAAAGVTPSDANIGFEILDKDQGLGTSQFMEATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDERKPSASVLVELFAGRSLEPGQVLAIINLVATSVPELSKSQITV 558
            +VG A   AI +  + +  +P Y  LY  L+  D  ++   L  A I + V+ +  ++LV       ARM LA  G+ P+  N G+E+ D    LG + FM+     R LEGE+ARTI A+  VK ARVH+ + +   F R ++KPSASV++    G S E  Q  +I  LVA +VP L  S +TV
Sbjct:   34 LVGAALMGAILYTSI-YLGRPSYETLYVGLSRDDVNRMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGL-PTSNNAGYELFDNMGSLGLTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGGFSAESAQ--SIRQLVAAAVPSLDASSVTV 215          
BLAST of EY728692 vs. ExPASy Swiss-Prot
Match: FLIF_CAUCR (Flagellar M-ring protein OS=Caulobacter crescentus GN=fliF PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.962e-23
Identity = 64/187 (34.22%), Postives = 104/187 (55.61%), Query Frame = -1
Query:    1 MVGLAASV-AIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMETLAAADIAYTVEPNSGALLVKADDVARARMKLAAAGVTPSDANIGFEILDKDQGLGTSQFMEATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDERKPSASVLVELFAGRSLEPGQVLAIINLVATSVPELSKSQITV 558
            M+G+ A V A+  A+V++  +     LY +L   ++ ++ + L  A I Y  + +   ++V  D VA AR+ +A  G+  S  +IG+EI D +  LG + F++    +R L+GEL RTI A+  V   RVHL +PK  +F  D  +PSA+V + +   R      V AI NLV++SVP +   ++ V
Sbjct:    1 MLGVGAGVVAVLVALVMFMGKEPSELLYSNLDLKEASEVTQALDQAGIKYETKGDGSTIMVPRDKVASARLMVAGKGLV-SSGSIGYEIFDTNNALGQTDFVQQLNRQRALQGELERTIKAMQGVNSVRVHLVLPKRQLFEEDAEQPSAAVTIGV-GSREPSSDMVRAIQNLVSSSVPNMKAEKVAV 185          
BLAST of EY728692 vs. ExPASy Swiss-Prot
Match: FLIF_RHIME (Flagellar M-ring protein OS=Rhizobium meliloti GN=fliF PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 6.758e-23
Identity = 66/189 (34.92%), Postives = 105/189 (55.56%), Query Frame = -1
Query:    1 LMVGLAASVAIGFAVV--LWSQQPDYRPLYGSLAGMDSKQIMETLAAADIAYTVEPNSGALLVKADDVARARMKLAAAGVTPSDANIGFEILDKDQGLGTSQFMEATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDERKPSASVLVELFAGRSLEPGQVLAIINLVATSVPELSKSQITV 561
            + + +A  VAIGF +   ++  +P +  LY  L   D  QI   LA A++ + V  + G++ V      +AR+ LA  G+ PS AN G+E+ D    LG + FM+     R LEGE+ARTI  ++ +  ARVH+ +P+   F + E+ P+ASV++   A  ++      +I +LVA+SVP L    +TV
Sbjct:   23 IALAVAGVVAIGFVLGAGIYVNRPSFETLYVGLERSDVTQISIALAEANVDFEVGTDGGSIQVPVGMTGKARLLLAERGL-PSSANAGYELFDNVGSLGLTSFMQEVTRVRALEGEIARTIQQISGIAAARVHIVMPERGSFRKAEQTPTASVMIR--ASATVGRSAASSIRHLVASSVPGLDVDDVTV 208          
BLAST of EY728692 vs. ExPASy Swiss-Prot
Match: FLIF_BACSU (Flagellar M-ring protein OS=Bacillus subtilis GN=fliF PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 3.040e-15
Identity = 51/202 (25.25%), Postives = 105/202 (51.98%), Query Frame = -1
Query:    1 WKPSPEMTMLRQVGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMETLAAADIAYTVEPNSGALLVKADDVARARMKLAAAGVTPSDANIGFEILDKDQGLGTSQFMEATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDERK-PSASVLVELFAGRSLEPGQVLAIINLVATSVPELSKSQITV 603
            WK     + L+++ ++  LAA + IG  + +++      PLY  L+  ++ QI E L A  +   +      + V  D V   ++++AA G+ P   +I +    ++ G G +         +  + EL+  I+ ++ +K ++V + +PK +VFV +E+   SAS+++++  G +L+  Q+  + +LV+ SVP L +  I +
Sbjct:   16 WK---NRSKLQKILMVSALAAIIIIGIIISVFASNSKMAPLYKDLSAEEAGQIKEELDAKKVPNELSNGGTVISVPEDQVDSLKVQMAAEGL-PKTGSIDYSFFGQNAGFGLTDNEFDMVKVKATQTELSNLINEMDGIKNSKVMINLPKDAVFVGEEQSAASASIVLQIQPGYTLDQSQINGLYHLVSKSVPNLKEDNIVI 213          
BLAST of EY728692 vs. ExPASy Swiss-Prot
Match: FLIE_PSEFS (Flagellar hook-basal body complex protein fliE OS=Pseudomonas fluorescens (strain SBW25) GN=fliE PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.663e-11
Identity = 39/67 (58.21%), Postives = 46/67 (68.66%), Query Frame = -1
Query:  694 VGRALTN-SGIPNSLQSVPTAFEMAKSGVTFTD*CSPRKKPSVSFQALTQVRNKLVQAYQDIMQMPV 891
            +G+A+   S    +   +  AFE+ KSGV  TD     +K SVSFQALTQVRNKLVQAYQDIMQMPV
Sbjct:   43 LGQAINKVSDTQQASSQLANAFEIGKSGVDLTDVMVASQKASVSFQALTQVRNKLVQAYQDIMQMPV 109          
BLAST of EY728692 vs. ExPASy Swiss-Prot
Match: FLIE_PSEF5 (Flagellar hook-basal body complex protein fliE OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=fliE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.479e-11
Identity = 36/48 (75.00%), Postives = 39/48 (81.25%), Query Frame = -1
Query:  694 TAFEMAKSGVTFTD*CSPRKKPSVSFQALTQVRNKLVQAYQDIMQMPV 837
            +AFE+ KSGV  TD     +K SVSFQALTQVRNKLVQAYQDIMQMPV
Sbjct:   61 SAFEIGKSGVDLTDVMISSQKASVSFQALTQVRNKLVQAYQDIMQMPV 108          
BLAST of EY728692 vs. ExPASy Swiss-Prot
Match: FLIE_PSEPF (Flagellar hook-basal body complex protein fliE OS=Pseudomonas fluorescens (strain Pf0-1) GN=fliE PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.543e-11
Identity = 36/47 (76.60%), Postives = 38/47 (80.85%), Query Frame = -1
Query:  694 AFEMAKSGVTFTD*CSPRKKPSVSFQALTQVRNKLVQAYQDIMQMPV 834
            AFE+ KSGV  TD     +K SVSFQALTQVRNKLVQAYQDIMQMPV
Sbjct:   63 AFEIGKSGVDLTDVMIASQKASVSFQALTQVRNKLVQAYQDIMQMPV 109          
BLAST of EY728692 vs. ExPASy Swiss-Prot
Match: FLIE_PSEFL (Flagellar hook-basal body complex protein fliE OS=Pseudomonas fluorescens GN=fliE PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.543e-11
Identity = 36/47 (76.60%), Postives = 38/47 (80.85%), Query Frame = -1
Query:  694 AFEMAKSGVTFTD*CSPRKKPSVSFQALTQVRNKLVQAYQDIMQMPV 834
            AFE+ KSGV  TD     +K SVSFQALTQVRNKLVQAYQDIMQMPV
Sbjct:   63 AFEIGKSGVDLTDVMIASQKASVSFQALTQVRNKLVQAYQDIMQMPV 109          
BLAST of EY728692 vs. ExPASy Swiss-Prot
Match: FLIE_PSEE4 (Flagellar hook-basal body complex protein fliE OS=Pseudomonas entomophila (strain L48) GN=fliE PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.543e-11
Identity = 36/47 (76.60%), Postives = 38/47 (80.85%), Query Frame = -1
Query:  694 AFEMAKSGVTFTD*CSPRKKPSVSFQALTQVRNKLVQAYQDIMQMPV 834
            AFE+ KSGV  TD     +K SVSFQALTQVRNKLVQAYQDIMQMPV
Sbjct:   64 AFEIGKSGVDLTDVMIASQKASVSFQALTQVRNKLVQAYQDIMQMPV 110          
BLAST of EY728692 vs. ExPASy Swiss-Prot
Match: FLIE_PSE14 (Flagellar hook-basal body complex protein fliE OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=fliE PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.543e-11
Identity = 36/47 (76.60%), Postives = 38/47 (80.85%), Query Frame = -1
Query:  694 AFEMAKSGVTFTD*CSPRKKPSVSFQALTQVRNKLVQAYQDIMQMPV 834
            AFE+ KSGV  TD     +K SVSFQALTQVRNKLVQAYQDIMQMPV
Sbjct:   63 AFEIGKSGVDLTDVMISSQKASVSFQALTQVRNKLVQAYQDIMQMPV 109          
The following BLAST results are available for this feature:
BLAST of EY728692 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
FLIF_BRUAB3.033e-2337.63Flagellar M-ring protein OS=Brucella abortus GN=fl... [more]
FLIF_CAUCR3.962e-2334.22Flagellar M-ring protein OS=Caulobacter crescentus... [more]
FLIF_RHIME6.758e-2334.92Flagellar M-ring protein OS=Rhizobium meliloti GN=... [more]
FLIF_BACSU3.040e-1525.25Flagellar M-ring protein OS=Bacillus subtilis GN=f... [more]
FLIE_PSEFS2.663e-1158.21Flagellar hook-basal body complex protein fliE OS=... [more]
FLIE_PSEF53.479e-1175.00Flagellar hook-basal body complex protein fliE OS=... [more]
FLIE_PSEPF4.543e-1176.60Flagellar hook-basal body complex protein fliE OS=... [more]
FLIE_PSEFL4.543e-1176.60Flagellar hook-basal body complex protein fliE OS=... [more]
FLIE_PSEE44.543e-1176.60Flagellar hook-basal body complex protein fliE OS=... [more]
FLIE_PSE144.543e-1176.60Flagellar hook-basal body complex protein fliE OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-007-C10-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728692 ID=EY728692; Name=EY728692; organism=Citrus sinensis; type=EST; length=924bp
CACGGTGATTTGCGACTTGCTCAATTCGGGAACGCTGGTGGCCACCAGGT
TGATGATCGCCAACACCTGGCCAGGCTCCAGGGAGCGGCCAGCAAACAAT
TCGACCAGTACCGAAGCGCTGGGCTTGCGTTCATCGCGCACAAACACCGA
GCTTTTCGGAATCGCCAGGTGCACGCGGGCGCCCTTGACGTTGTTCAACG
CGGAAATGGTGCGCGCCAGTTCGCCTTCCAGGCCACGACGGTAGCGGGTG
GCTTCCATGAACTGGCTGGTACCCAGGCCCTGGTCCTTGTCGAGGATTTC
AAAGCCGATATTGGCGTCGGACGGGGTGACGCCGGCTGCCGCCAGTTTCA
TCCGTGCACGGGCCACATCATCGGCCTTGACCAACAGGGCGCCGGAATTC
GGTTCGACGGTGTAGGCGATGTCTGCCGCCGCCAGGGTTTCCATGATCTG
CTTGGAATCCATGCCCGCCAGGCTGCCGTACAGCGGGCGGTAATCCGGTT
GCTGGGACCACAGCACCACGGCAAAACCAATCGCCACGCTGGCAGCCAGG
CCGACCATCAGGCCCACCTGACGCAGCATGGTCATCTCGGGAGAGGGTTT
CCAGGAACGACAGGCCGAACAGCGGCGGCTTGCCGTCTGCCTTGGCGGGT
GCGTTATCCACGACTGCTTCTGCCATGACTCAAATCGTCCTTAAACCGGC
ATCTGCATGATGTCTTGATAGGCTTGAACCAGCTTGTTGCGCACCTGGGT
CAAGGCCTGGAATGAAACGCTGGGCTTTTTGCGAGGCGAACATCAGTCGG
TGAAGGTCACCCCGCTTTTGGCCATCTCGAAAGCGGTGGGCACTGATTGG
AGGCTGTTGGGTATCCCTGAATTTGTTAATGCCCGGCCAACATGTCGGAA
AAGTGGTCTGCCCATTCCGGACGT
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