EY728692

Overview
NameEY728692
Unique NameEY728692
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length924
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY728692 vs. ExPASy Swiss-Prot
Match: FLIE_PSESM (Flagellar hook-basal body complex protein fliE OS=Pseudomonas syringae pv. tomato GN=fliE PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.934e-11
Identity = 35/47 (74.47%), Postives = 38/47 (80.85%), Query Frame = -1 
Query:  694 AFEMAKSGVTFTD*CSPRKKPSVSFQALTQVRNKLVQAYQDIMQMPV 834
            AFE+ KSG+  TD     +K SVSFQALTQVRNKLVQAYQDIMQMPV
Sbjct:   63 AFEVGKSGIDLTDVMISSQKASVSFQALTQVRNKLVQAYQDIMQMPV 109
The following BLAST results are available for this feature:
BLAST of EY728692 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
FLIE_PSESM5.934e-1174.47Flagellar hook-basal body complex protein fliE OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-007-C10-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728692 ID=EY728692; Name=EY728692; organism=Citrus sinensis; type=EST; length=924bp
CACGGTGATTTGCGACTTGCTCAATTCGGGAACGCTGGTGGCCACCAGGT
TGATGATCGCCAACACCTGGCCAGGCTCCAGGGAGCGGCCAGCAAACAAT
TCGACCAGTACCGAAGCGCTGGGCTTGCGTTCATCGCGCACAAACACCGA
GCTTTTCGGAATCGCCAGGTGCACGCGGGCGCCCTTGACGTTGTTCAACG
CGGAAATGGTGCGCGCCAGTTCGCCTTCCAGGCCACGACGGTAGCGGGTG
GCTTCCATGAACTGGCTGGTACCCAGGCCCTGGTCCTTGTCGAGGATTTC
AAAGCCGATATTGGCGTCGGACGGGGTGACGCCGGCTGCCGCCAGTTTCA
TCCGTGCACGGGCCACATCATCGGCCTTGACCAACAGGGCGCCGGAATTC
GGTTCGACGGTGTAGGCGATGTCTGCCGCCGCCAGGGTTTCCATGATCTG
CTTGGAATCCATGCCCGCCAGGCTGCCGTACAGCGGGCGGTAATCCGGTT
GCTGGGACCACAGCACCACGGCAAAACCAATCGCCACGCTGGCAGCCAGG
CCGACCATCAGGCCCACCTGACGCAGCATGGTCATCTCGGGAGAGGGTTT
CCAGGAACGACAGGCCGAACAGCGGCGGCTTGCCGTCTGCCTTGGCGGGT
GCGTTATCCACGACTGCTTCTGCCATGACTCAAATCGTCCTTAAACCGGC
ATCTGCATGATGTCTTGATAGGCTTGAACCAGCTTGTTGCGCACCTGGGT
CAAGGCCTGGAATGAAACGCTGGGCTTTTTGCGAGGCGAACATCAGTCGG
TGAAGGTCACCCCGCTTTTGGCCATCTCGAAAGCGGTGGGCACTGATTGG
AGGCTGTTGGGTATCCCTGAATTTGTTAATGCCCGGCCAACATGTCGGAA
AAGTGGTCTGCCCATTCCGGACGT
back to top