EY728681

Overview
NameEY728681
Unique NameEY728681
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728681 vs. ExPASy Swiss-Prot
Match: PYRC_THEPX (Dihydroorotase OS=Thermoanaerobacter sp. (strain X514) GN=pyrC PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.285e-12
Identity = 56/173 (32.37%), Postives = 82/173 (47.40%), Query Frame = 2
Query:   59 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAG 574
            LK  P   EE  +   + +AK T       G  LHI H            EAK  G  IT E  PH L  + E + + DT  K  PP+R   + E L E L DG ID +++DH+P   + K +    +  A  GIS L+    V  ++  + G +T+++L ++ S  PAK+ G
Sbjct:  201 LKGIPREAEEVMLARNIILAKST-------GVRLHIAHISTKGSVELIR-EAKEKGVKITAEVTPHNLTLTDEAVYNYDTNTKAYPPLRTREDIEALIEGLKDGTIDAIATDHAPHTKDDKKVP---YDMAAFGISGLETAFSVINTFLVQTGKITIKELVNYMSINPAKILG 362          
BLAST of EY728681 vs. ExPASy Swiss-Prot
Match: PYRC_THEP3 (Dihydroorotase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=pyrC PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.285e-12
Identity = 56/173 (32.37%), Postives = 82/173 (47.40%), Query Frame = 2
Query:   59 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAG 574
            LK  P   EE  +   + +AK T       G  LHI H            EAK  G  IT E  PH L  + E + + DT  K  PP+R   + E L E L DG ID +++DH+P   + K +    +  A  GIS L+    V  ++  + G +T+++L ++ S  PAK+ G
Sbjct:  201 LKGIPREAEEVMLARNIILAKST-------GVRLHIAHISTKGSVELIR-EAKEKGVKITAEVTPHNLTLTDEAVYNYDTNTKAYPPLRTREDIEALIEGLKDGTIDAIATDHAPHTKDDKKVP---YDMAAFGISGLETAFSVINTFLVQTGKITIKELVNYMSINPAKILG 362          
BLAST of EY728681 vs. ExPASy Swiss-Prot
Match: PYRC_GEOSW (Dihydroorotase OS=Geobacillus sp. (strain WCH70) GN=pyrC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.459e-12
Identity = 48/162 (29.63%), Postives = 79/162 (48.77%), Query Frame = 2
Query:   92 AIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGV-TLEQLASWWSERPAKLAG 574
            ++ E + +A+D      A G H H+ H            +AK  G  +T E  PH+L    E+IP  D  +K  PP+R   ++E L E L+DG ID +++DH+P     K   +     A  GI  L+   P+ +++  +  + TL+QL    + +PA+  G
Sbjct:  207 SVCESVHIARDVLL-AEATGCHYHVCHISTKESVRVVR-DAKRAGIRVTAEVTPHHLLLCDEDIPGPDANYKMNPPLRSKEDREALIEGLLDGTIDFIATDHAPHTEAEK---QKGINAAPFGIVGLETAFPLLYTHLVETNILTLKQLIDLLTVKPAECFG 363          

HSP 2 Score: 20.7866 bits (42), Expect = 2.459e-12
Identity = 7/23 (30.43%), Postives = 14/23 (60.87%), Query Frame = 1
Query:  568 CWTSSKGAIAIGNHADLVVWELK 636
            C+    G +A+G  AD+ + +L+
Sbjct:  361 CFGLPLGKLAVGERADITIIDLE 383          
BLAST of EY728681 vs. ExPASy Swiss-Prot
Match: PYRC_GEOBB (Dihydroorotase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=pyrC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.862e-12
Identity = 48/142 (33.80%), Postives = 68/142 (47.89%), Query Frame = 2
Query:  149 GAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG 574
            GA +HI H             AK  G  +T ET PHY   + E +   +T  K  PP+R AA+ E +   L DG ID +++DH+P  P+ K   +  F  A  GI  L+  L ++     +  + L QL S  S  PAK+ G
Sbjct:  226 GAPVHIAHISTVGSARIIR-NAKARGVKVTCETAPHYFTLTDEAVRGYETNAKMNPPLRSAADVEAMKAGLADGTIDAIATDHAPHHPDEK---DVEFNVALNGIVGLETSLSLSLKLVEEGRLDLNQLVSLMSCTPAKILG 363          
BLAST of EY728681 vs. ExPASy Swiss-Prot
Match: PYRC_CALS8 (Dihydroorotase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=pyrC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.862e-12
Identity = 52/175 (29.71%), Postives = 83/175 (47.43%), Query Frame = 2
Query:   53 TYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAG 574
            T L+  P   E   I   + +AK+T++       HLHI H           M AK  G ++T +TCPHY++ + EE+   +T  K  PP+R   + E L E L +G ID +S+DH+P   + K ++   F  A  G    +    V ++Y   K G  + ++    +  P K+ G
Sbjct:  201 TGLRGIPREAESVIIARDILLAKETKS-------HLHITHVSTKESVRLIKM-AKEWGVNVTADTCPHYISLTEEEVLGFNTNAKVNPPLRTQEDVEALIEGLKEGVIDCISTDHAPHHKDEKNVE---FNLAASGTIGFETAFSVLFTYLVEKNGFDIGKIVELLNHNPRKIIG 364          
BLAST of EY728681 vs. ExPASy Swiss-Prot
Match: PYRC_BACP2 (Dihydroorotase OS=Bacillus pumilus (strain SAFR-032) GN=pyrC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.738e-12
Identity = 49/159 (30.82%), Postives = 78/159 (49.06%), Query Frame = 2
Query:   92 AIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGV-TLEQLASWWSERPAK 565
            +I E + +A+D      A   H H+ H            +AK  G  +T E  PH+L     +IP  DT +K  PP+R   ++E L E L+DG ID +++DH+P   E K        +A  GI  L+   P+ ++   K G  TL++L  + + +PA+
Sbjct:  206 SICESVHIARDVLL-AEAANCHYHVCHISTKESVRVVR-DAKKAGIRVTAEVSPHHLLLCDADIPGLDTNYKMNPPLRGKEDREALIEGLLDGTIDFIATDHAPHTEEEK---NETMQRAPFGIVGLETAFPLLYTRFVKTGEWTLKELVDYMTIKPAE 359          
BLAST of EY728681 vs. ExPASy Swiss-Prot
Match: PYRC_THETN (Dihydroorotase OS=Thermoanaerobacter tengcongensis GN=pyrC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.882e-12
Identity = 56/173 (32.37%), Postives = 83/173 (47.98%), Query Frame = 2
Query:   59 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAG 574
            LK  P   EE  +   + +AK T       GA LHI H             AK  G SIT E  PH+L  + E + + DT  K  PP+R   + E L E L DG ID +++DH+P   + K +    +  A  GIS L+    V  ++  + G +T++ L ++ S  PA++ G
Sbjct:  201 LKGIPREAEEVMLARNIILAKAT-------GAKLHIAHVSTKGSVELIR-RAKEEGVSITAEVTPHHLTRTDEAVYNYDTNTKVFPPLRTREDVEALIEGLKDGTIDAIATDHAPHTKDDKKVP---YDMAPFGISGLETAFSVINTFLIQTGIITMKALVNYMSMNPARILG 362          
BLAST of EY728681 vs. ExPASy Swiss-Prot
Match: PYRC_ANATD (Dihydroorotase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=pyrC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.882e-12
Identity = 52/175 (29.71%), Postives = 83/175 (47.43%), Query Frame = 2
Query:   53 TYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAG 574
            T L+  P   E   +   + +AK+T+       AHLHI H           M AK  G ++T +TCPHY++ + EE+   +T  K  PP+R   + E L E L +G ID +S+DH+P   + K ++   F  A  G    +    V ++Y   K G  + ++    +  P K+ G
Sbjct:  201 TGLRGIPREAESIIVARDILLAKETK-------AHLHITHVSTKESVRLIKM-AKEWGVNVTADTCPHYISLTEEEVLGFNTNAKVNPPLRTQEDIEALIEGLKEGVIDCISTDHAPHHKDEKNVE---FNLAASGTIGFETAFSVLFTYLVEKNGFDIGKIVELLNYNPRKIIG 364          
BLAST of EY728681 vs. ExPASy Swiss-Prot
Match: PYRC_CLOCE (Dihydroorotase OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=pyrC PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.988e-12
Identity = 56/192 (29.17%), Postives = 86/192 (44.79%), Query Frame = 2
Query:   17 LEDDTLDTRSYSTY---LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGN--FLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAG 574
            L D+ L    Y +    LK  P   EE  I   L +A+ T+       A +HI H             AK  G  +T ETCPHY   +       +T  K  PP+R   + + + + L DG ID++S+DH+P       +DE N  F  A  G+   +   P+  +Y  K G ++L++L    S  P+++ G
Sbjct:  185 LVDEGLMNEGYQSSILGLKGNPAPAEEVMIARDLILAEYTK-------ATIHIAHVSTELGVDLIR-NAKRRGVKVTAETCPHYFTLTDNACEGFNTNAKVNPPLRTQKDVDAIIQGLKDGTIDIISTDHAP-----HHIDEKNVEFKIAANGMVGFETAFPLAVTYLVKPGHLSLKELVYKMSFNPSQMLG 363          

HSP 2 Score: 25.0238 bits (53), Expect = 6.988e-12
Identity = 12/40 (30.00%), Postives = 19/40 (47.50%), Query Frame = 1
Query:  580 SKGAIAIGNHADLVVWELKRSLN*QXTSCTLEHPASPLLG 699
            +KG I +G  ADL++++L        T    +   SP  G
Sbjct:  365 NKGTIEVGKLADLIIFDLNEEYKVNITEFESKSKNSPFNG 404          
BLAST of EY728681 vs. ExPASy Swiss-Prot
Match: PYRC_STAAW (Dihydroorotase OS=Staphylococcus aureus (strain MW2) GN=pyrC PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.327e-12
Identity = 47/158 (29.75%), Postives = 78/158 (49.37%), Query Frame = 2
Query:   95 IRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAK 565
            I E + +A+D      A G H H+ H            +AK  G  +T E  PH+L  + ++IP  +  +K  PP+R   ++E L E L+DG ID +++DH+P   + K        KA  GI   +   P+ +++  K G  TL+QL  + + +P +
Sbjct:  206 ICESVQIARDVLL-AEAAGCHYHVCHVSTKESVRVIR-DAKRAGIHVTAEVTPHHLLLTEDDIPGNNAIYKMNPPLRSTEDREALLEGLLDGTIDCIATDHAPHARDEKAQP---MEKAPFGIVGSETAFPLLYTHFVKNGDWTLQQLVDYLTIKPCE 358          
The following BLAST results are available for this feature:
BLAST of EY728681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
PYRC_THEPX1.285e-1232.37Dihydroorotase OS=Thermoanaerobacter sp. (strain X... [more]
PYRC_THEP31.285e-1232.37Dihydroorotase OS=Thermoanaerobacter pseudethanoli... [more]
PYRC_GEOSW2.459e-1229.63Dihydroorotase OS=Geobacillus sp. (strain WCH70) G... [more]
PYRC_GEOBB2.862e-1233.80Dihydroorotase OS=Geobacter bemidjiensis (strain B... [more]
PYRC_CALS82.862e-1229.71Dihydroorotase OS=Caldicellulosiruptor saccharolyt... [more]
PYRC_BACP23.738e-1230.82Dihydroorotase OS=Bacillus pumilus (strain SAFR-03... [more]
PYRC_THETN4.882e-1232.37Dihydroorotase OS=Thermoanaerobacter tengcongensis... [more]
PYRC_ANATD4.882e-1229.71Dihydroorotase OS=Anaerocellum thermophilum (strai... [more]
PYRC_CLOCE6.988e-1229.17Dihydroorotase OS=Clostridium cellulolyticum (stra... [more]
PYRC_STAAW8.327e-1229.75Dihydroorotase OS=Staphylococcus aureus (strain MW... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-007-B08-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728681 ID=EY728681; Name=EY728681; organism=Citrus sinensis; type=EST; length=869bp
CACGCGTCCGGTAAAACTCGAAGATGATACACTTGACACTCGATCTTATT
CAACATATCTGAAGACAAGGCCACCTTCATGGGAGGAAGCGGCTATCAGA
GAACTCTTGACAGTAGCAAAGGACACGAGGACAGATGGCCCTGCAGAAGG
AGCTCATCTTCACATTGTTCATTTATCTGATGCTAGTTCTTCCTTGGATC
TATTAATGGAAGCAAAAACTAATGGTGACAGCATAACTGTTGAGACATGC
CCGCACTACTTGGCTTTCTCAGCAGAGGAGATTCCTGATGGAGATACTCG
GTTCAAATGTGCTCCGCCCATACGTGATGCAGCAAATAAAGAAAAATTAT
GGGAGGCTCTGATGGATGGACACATTGATATGCTAAGCTCTGATCATTCA
CCAACCGTGCCAGAACTTAAACTCCTTGATGAAGGCAACTTTTTGAAAGC
TTGGGGTGGCATATCATCTTTGCAGTTTGTTCTTCCTGTCACGTGGTCTT
ATGGGCGGAAATATGGAGTAACTTTAGAACAGTTAGCTTCATGGTGGAGT
GAGAGACCTGCCAAGCTTGCTGGACAAGTTCAAAGGGTGCCATTGCAATT
GGAAATCATGCAGACCTAGTTGTATGGGAACTGAAGCGGAGTTTGAATTG
ACAATGNACATCCTGTACACTGGAGCATCCAGCATCTCCGCTATTGGGGA
AGAAATCTCGGGAAATCTGCCCCATAGACTAAGACGCGTGTCTCCATGTA
AACTGGCNNNNNNNNNNANGGGANNNANNNNNCCNGCNNNCTGTGNTTTC
CNTCCTCNCGACCTTACCNTCAAATTNNATAATATTTATTTCCCTTATCC
CCCCAAACCACGATCTANC
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