EY728668

Overview
NameEY728668
Unique NameEY728668
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length838
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728668 vs. ExPASy Swiss-Prot
Match: MTNA_HAHCH (Methylthioribose-1-phosphate isomerase OS=Hahella chejuensis (strain KCTC 2396) GN=mtnA PE=3 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 1.412e-12
Identity = 48/156 (30.77%), Postives = 69/156 (44.23%), Query Frame = 2
Query:  158 IDSNSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVCNLNAFSGTAADAASFLGDK------LEYLVSSRPTAVNLSDAAAKLQEIISKXXXXXXXXDSVFQAYIEAAEIMLRDDVATNKAIGSYG 607
            +  +S+ +I +    L LLDQRKLPL+  Y+      +   AIR+MVVRG                  + A  G A  AA F  D+      LE L  SRPTAVNL  A  +++ +I            +F   +E A  +  +D+  N  +G  G
Sbjct:    1 MSQSSVSAIRWANNQLILLDQRKLPLQEAYVNCVTHVEVADAIRQMVVRG-------------APAIGIAAAYGVALAAAEFGSDRDRLHRALETLADSRPTAVNLFWALRRMRGLID-----GASVADLFPLLVEEATRIHEEDLQANLTMGELG 138          

HSP 2 Score: 35.4242 bits (80), Expect = 1.412e-12
Identity = 23/63 (36.51%), Postives = 32/63 (50.79%), Query Frame = 3
Query:  654 LTHCNTGQAGNSWIWVRPLGVIRALHPEGVVERAYCSXSGALSQGPRSPALELGKD--PVRLL 836
            LTHCNTG       +   LGVIR+ +   +V   +   +    QG R  A EL +D  PV+L+
Sbjct:  151 LTHCNTGSLATGG-YGTALGVIRSAYRRDLVTEVFADETRPWLQGARLTAWELCQDDIPVKLI 212          
BLAST of EY728668 vs. ExPASy Swiss-Prot
Match: MTNA_XENLA (Methylthioribose-1-phosphate isomerase OS=Xenopus laevis GN=mri1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.558e-12
Identity = 53/182 (29.12%), Postives = 86/182 (47.25%), Query Frame = 2
Query:  170 SLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVCNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLQEIISKXXXXXXXXDS-VFQAYIEAAEIMLRDDVATNKAIGSYGGRCLSNRAQKFXMLLSYSLQHWAGWQQLDMGTALG 712
            SL+S+ Y RGSLQ+L+Q  LP ++ Y  +     G  AIR M VRG             VE+              +F+ + L +LVS+RPTAVN+  AA +L   +++           + ++ ++ AE +L+ DV  N+ IG +G + +  +A     +   +  +         GTALG
Sbjct:    2 SLESVRYSRGSLQVLNQLLLPHKSEYEPVTGVQQGADAIRTMKVRGAPAIAIVGVLSLAVELTTKPC--QDVPSLITFVRESLHHLVSARPTAVNMKKAADELNAFLAEEADKPGATSQRLTESVVQWAESLLKKDVEDNQMIGDFGAKHILEKAGPTEKVCMLTHCNTGSLATAGYGTALG 181          
BLAST of EY728668 vs. ExPASy Swiss-Prot
Match: MTNA_PSEU5 (Methylthioribose-1-phosphate isomerase OS=Pseudomonas stutzeri (strain A1501) GN=mtnA PE=3 SV=2)

HSP 1 Score: 48.521 bits (114), Expect = 4.008e-12
Identity = 44/149 (29.53%), Postives = 66/149 (44.30%), Query Frame = 2
Query:  164 SNSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVCNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLQEIISKXXXXXXXXDSVFQAYIEAAEIMLRD-DVATNKAIGSYG 607
            +  ++SI +    L LLDQRKLP E ++     +A    AIR+MVVRG             +      A  G   D    L + +  L +SRPTAVNL  A  +++E + +             A +EA  I + + D   N A+  +G
Sbjct:    8 AEKVKSIEWHGDRLSLLDQRKLPTEEVWHSCDSAAAVADAIRDMVVRGAPAIGISAAYALVLAARTRMAAGG---DWRQALEEDVALLAASRPTAVNLFWALNQMRERLERLKPGEDPC-----AALEAQAISIHESDREANLAMAQFG 148          

HSP 2 Score: 43.8986 bits (102), Expect = 4.008e-12
Identity = 27/58 (46.55%), Postives = 30/58 (51.72%), Query Frame = 3
Query:  654 LTHCNTGQAGNSWIWVRPLGVIRALHPEGVVERAYCSXSGALSQGPRSPALELGKDPV 827
            LTHCNTG           LGVIRA H +G+VER Y   +    QG R  A EL  D V
Sbjct:  163 LTHCNTGALATGGFGTA-LGVIRAAHLDGLVERVYVDETRPWLQGSRLTAWELLGDGV 219          
BLAST of EY728668 vs. ExPASy Swiss-Prot
Match: MTNA_PELCD (Methylthioribose-1-phosphate isomerase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=mtnA PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 4.013e-12
Identity = 46/155 (29.68%), Postives = 78/155 (50.32%), Query Frame = 2
Query:  170 SLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVCNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLQEIISKXXXXXXXXDSVFQAYIEAAEIMLRDDVATNKAIGSYGGRCLSNRAQ 634
            S++ I YR G ++++DQR LP + ++LE RD      AI  MVVRG             +   ++ A S  +  AA  L +  + L ++RPTAVNL  A  ++Q             D++  A ++ A+ +   D A N+A+G +G   +++ A+
Sbjct:    2 SIKPIEYRDGVVRMIDQRLLPTQELWLEYRDYQAVAEAILTMVVRGAPAIGVAAAYGAALGARDIEADSFESFLAA--LKNVCDTLAATRPTAVNLFWALERMQ--AKARELAALPLDAIKAALMDEAQAIAAQDDAINRAMGRHGAELIADNAR 152          

HSP 2 Score: 31.187 bits (69), Expect = 4.013e-12
Identity = 26/72 (36.11%), Postives = 29/72 (40.28%), Query Frame = 3
Query:  627 ELRNSXCSCLTHCNTGQAGNSWIWVRPLGVIRALHPEGVVERAYCSXSGALSQGPRSPALELGKD--PVRLL 836
            EL       LTHCN G       +   LGVIRA    G         +    QG R  A EL KD  PV L+
Sbjct:  145 ELIADNARVLTHCNAGALATGG-YGTALGVIRAAVESGKKISVLADETRPFLQGSRLTAWELHKDGIPVTLI 215          
BLAST of EY728668 vs. ExPASy Swiss-Prot
Match: MTNA_XYLFT (Methylthioribose-1-phosphate isomerase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=mtnA PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 5.206e-12
Identity = 43/135 (31.85%), Postives = 64/135 (47.41%), Query Frame = 2
Query:  203 LQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVCNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLQEIISKXXXXXXXXDSVFQAYIEAAEIMLRDDVATNKAIGSYG 607
            L+LLDQRKLP    Y+E   S D   AIR ++VRG             +    + A  G   +A   L   L+ L ++RPTAVNL+   A+++  +S             Q     AE + R+D+  N+ +G+YG
Sbjct:   25 LKLLDQRKLPFVVEYVECHSSEDVTQAIRTLIVRGAPAIGIVAGWGAVLAAREIEAVDG--IEALCKLEPALQRLHAARPTAVNLAWVLARMRRTLSAAHADWR------QVMECEAESIAREDLTANRCMGAYG 151          

HSP 2 Score: 31.9574 bits (71), Expect = 5.206e-12
Identity = 20/58 (34.48%), Postives = 27/58 (46.55%), Query Frame = 3
Query:  654 LTHCNTGQAGNSWIWVRPLGVIRALHPEGVVERAYCSXSGALSQGPRSPALELGKDPV 827
            LTHCNTG    +      LGVIR    +G + R +   +    QG R    EL +D +
Sbjct:  162 LTHCNTGSLATAGFGT-ALGVIRDGIAQGRIARVFVGETRPWLQGARLTVWELQQDGI 218          
BLAST of EY728668 vs. ExPASy Swiss-Prot
Match: MTNA_XYLF2 (Methylthioribose-1-phosphate isomerase OS=Xylella fastidiosa (strain M23) GN=mtnA PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 5.206e-12
Identity = 43/135 (31.85%), Postives = 64/135 (47.41%), Query Frame = 2
Query:  203 LQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVCNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLQEIISKXXXXXXXXDSVFQAYIEAAEIMLRDDVATNKAIGSYG 607
            L+LLDQRKLP    Y+E   S D   AIR ++VRG             +    + A  G   +A   L   L+ L ++RPTAVNL+   A+++  +S             Q     AE + R+D+  N+ +G+YG
Sbjct:   25 LKLLDQRKLPFVVEYVECHSSEDVTQAIRTLIVRGAPAIGIVAGWGAVLAAREIEAVDG--IEALCKLEPALQRLHAARPTAVNLAWVLARMRRTLSAAHADWR------QVMECEAESIAREDLTANRCMGAYG 151          

HSP 2 Score: 31.9574 bits (71), Expect = 5.206e-12
Identity = 20/58 (34.48%), Postives = 27/58 (46.55%), Query Frame = 3
Query:  654 LTHCNTGQAGNSWIWVRPLGVIRALHPEGVVERAYCSXSGALSQGPRSPALELGKDPV 827
            LTHCNTG    +      LGVIR    +G + R +   +    QG R    EL +D +
Sbjct:  162 LTHCNTGSLATAGFGT-ALGVIRDGIAQGRIARVFVGETRPWLQGARLTVWELQQDGI 218          
BLAST of EY728668 vs. ExPASy Swiss-Prot
Match: MTNA_PSESM (Methylthioribose-1-phosphate isomerase OS=Pseudomonas syringae pv. tomato GN=mtnA PE=3 SV=1)

HSP 1 Score: 45.8246 bits (107), Expect = 8.774e-12
Identity = 29/75 (38.67%), Postives = 37/75 (49.33%), Query Frame = 3
Query:  603 MGAGVFRIELRNSXCSCLTHCNTGQAGNSWIWVRPLGVIRALHPEGVVERAYCSXSGALSQGPRSPALELGKDPV 827
            +GA + R    N   + LTHCNTG           LGVIRA H EG++ER Y   +    QG R  A EL  + +
Sbjct:  147 LGADLIRKHQGNLQ-TVLTHCNTGALATGGFGTA-LGVIRAAHLEGMIERVYADETRPWLQGSRLTAWELANEGI 219          

HSP 2 Score: 45.4394 bits (106), Expect = 8.774e-12
Identity = 34/107 (31.78%), Postives = 50/107 (46.73%), Query Frame = 2
Query:  164 SNSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVCNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLQE 484
            +  +++I +R  +L LLDQR LP E ++     +A    AIR MVVRG               V    A      D    L + ++ L  SRPTAVNL  A  ++++
Sbjct:    8 AEKVKAIDWRDDALYLLDQRVLPFEEVWHRYTTAAGVAEAIRTMVVRGAPAIGISAAYG---AVLGARARIAEGGDWYPALEEDMQLLADSRPTAVNLFWALNRIRD 111          
BLAST of EY728668 vs. ExPASy Swiss-Prot
Match: MTNA_NITOC (Methylthioribose-1-phosphate isomerase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=mtnA PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 8.782e-12
Identity = 44/152 (28.95%), Postives = 71/152 (46.71%), Query Frame = 2
Query:  152 VSIDSNSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVCNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLQEIISKXXXXXXXXDSVFQAYIEAAEIMLRDDVATNKAIGSYG 607
            +S + + ++++ +    ++LLDQR+LP E IY  I   +D   AI +MVVRG             V +     FS   +     L   L  L ++RPTA+NL+ A A++Q II               A +  A  +  +D+A N+ +G  G
Sbjct:    1 MSAEHDQIRAVAWTGAGVRLLDQRRLPQEEIYWTIACVSDVAQAITKMVVRG--APAIGIAAAYGVVLAARARFSEAGSGWKQLLEADLCDLEAARPTAINLAWALARMQAIIQGLPDHRDPE----SALLVEARCIHEEDIAANRRMGELG 146          

HSP 2 Score: 35.039 bits (79), Expect = 8.782e-12
Identity = 20/58 (34.48%), Postives = 28/58 (48.28%), Query Frame = 3
Query:  654 LTHCNTGQAGNSWIWVRPLGVIRALHPEGVVERAYCSXSGALSQGPRSPALELGKDPV 827
            LTHCNTG           LGVIR  + +G +E+ +   +    QG R    EL +D +
Sbjct:  157 LTHCNTGSLATGGFGT-ALGVIRHAYGKGRIEKVFADETRPWLQGARLTTWELLRDGI 213          
BLAST of EY728668 vs. ExPASy Swiss-Prot
Match: MTNA_PSEU2 (Methylthioribose-1-phosphate isomerase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=mtnA PE=3 SV=2)

HSP 1 Score: 45.8246 bits (107), Expect = 1.920e-11
Identity = 29/75 (38.67%), Postives = 37/75 (49.33%), Query Frame = 3
Query:  603 MGAGVFRIELRNSXCSCLTHCNTGQAGNSWIWVRPLGVIRALHPEGVVERAYCSXSGALSQGPRSPALELGKDPV 827
            +GA + R    N   + LTHCNTG           LGVIRA H EG++ER Y   +    QG R  A EL  + +
Sbjct:  147 LGADLIRKHQGNLQ-TVLTHCNTGALATGGFGTA-LGVIRAAHLEGMIERVYADETRPWLQGSRLTAWELANEGI 219          

HSP 2 Score: 44.2838 bits (103), Expect = 1.920e-11
Identity = 34/107 (31.78%), Postives = 50/107 (46.73%), Query Frame = 2
Query:  164 SNSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVCNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLQE 484
            +  +++I +R  +L LLDQR LP E ++     +     AIR MVVRG               V    A     AD    L + ++ L  SRPTAVNL  A  ++++
Sbjct:    8 AEKVKAIDWRDDALYLLDQRVLPFEEVWHRYTTAEGVAEAIRTMVVRGAPAIGISAAYG---AVLAARARIAQGADWYPALEEDMQLLADSRPTAVNLFWALNRMRD 111          
BLAST of EY728668 vs. ExPASy Swiss-Prot
Match: MTNA_PSE14 (Methylthioribose-1-phosphate isomerase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=mtnA PE=3 SV=1)

HSP 1 Score: 45.8246 bits (107), Expect = 3.236e-11
Identity = 29/75 (38.67%), Postives = 37/75 (49.33%), Query Frame = 3
Query:  603 MGAGVFRIELRNSXCSCLTHCNTGQAGNSWIWVRPLGVIRALHPEGVVERAYCSXSGALSQGPRSPALELGKDPV 827
            +GA + R    N   + LTHCNTG           LGVIRA H EG++ER Y   +    QG R  A EL  + +
Sbjct:  147 LGADLIRRHQGNLQ-TVLTHCNTGALATGGFGTA-LGVIRAAHLEGMIERVYADETRPWLQGSRLTAWELANEGI 219          

HSP 2 Score: 43.5134 bits (101), Expect = 3.236e-11
Identity = 33/107 (30.84%), Postives = 49/107 (45.79%), Query Frame = 2
Query:  164 SNSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVCNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLQE 484
            +  +++I +R  +L LLDQR LP E ++     +     AIR MVVRG               V    A      D    L + ++ L  SRPTAVNL  A  ++++
Sbjct:    8 AEKVKAIDWRDDALYLLDQRVLPFEEVWHRYTTAEGVAEAIRTMVVRGAPAIGISAAYG---AVLGARARIAEGGDWYPALEEDMQLLADSRPTAVNLFWALNRMRD 111          
The following BLAST results are available for this feature:
BLAST of EY728668 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
MTNA_HAHCH1.412e-1230.77Methylthioribose-1-phosphate isomerase OS=Hahella ... [more]
MTNA_XENLA3.558e-1229.12Methylthioribose-1-phosphate isomerase OS=Xenopus ... [more]
MTNA_PSEU54.008e-1229.53Methylthioribose-1-phosphate isomerase OS=Pseudomo... [more]
MTNA_PELCD4.013e-1229.68Methylthioribose-1-phosphate isomerase OS=Pelobact... [more]
MTNA_XYLFT5.206e-1231.85Methylthioribose-1-phosphate isomerase OS=Xylella ... [more]
MTNA_XYLF25.206e-1231.85Methylthioribose-1-phosphate isomerase OS=Xylella ... [more]
MTNA_PSESM8.774e-1238.67Methylthioribose-1-phosphate isomerase OS=Pseudomo... [more]
MTNA_NITOC8.782e-1228.95Methylthioribose-1-phosphate isomerase OS=Nitrosoc... [more]
MTNA_PSEU21.920e-1138.67Methylthioribose-1-phosphate isomerase OS=Pseudomo... [more]
MTNA_PSE143.236e-1138.67Methylthioribose-1-phosphate isomerase OS=Pseudomo... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-007-A02-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728668 ID=EY728668; Name=EY728668; organism=Citrus sinensis; type=EST; length=838bp
CACGCGTCCGCGGACGCGTGGGTGTATAACAGACATACACTCACTTATAT
ACTGTTTTTTCAGCGAATCATTGGTAATATTTGCGTCAGCTTCTGCGAAG
CGAGATCGTAAAGTAGCCGCAAGAGAGTGAAAACAGATGGCTCTTGATTC
CGTTTCGATCGACAGCAACTCTCTTCAGTCCATTTGCTACAGGCGTGGCT
CCCTTCAGCTTCTCGACCAGAGAAAGCTTCCTCTGGAAACTATTTATTTG
GAAATTCGCGATTCTGCCGATGGATGGTCTGCAATACGGGAAATGGTGGT
GCGGGGGGCGCCTGCCATTGCTATAGCAGCGGCACTTTCCCTGGCAGTGG
AGGTGTGTAATTTGAATGCATTTAGTGGGACTGCTGCCGATGCAGCTTCA
TTTCTTGGCGATAAGTTGGAATATCTTGTCTCTAGTCGACCGACTGCAGT
GAATCTTTCAGATGCTGCCGCAAAACTCCAAGAAATCATATCAAAGGCTG
CCGCTACTGCTTCANAAGCCGATAGTGTATTTCAGGCCTACATAGAAGCT
GCTGAAATTATGCTCAGAGATGATGTGGCTACAAACAAAGCTATTGGTTC
TTATGGGGGCAGGTGTCTTTCGAATCGAGCTCAGAAATTCTANATGCTCC
TGTCTTACTCATTGCAACACTGGGCAGGCTGGCAACAGCTGGATATGGGT
ACGGCCCTTGGGTGTGATCCGTGCACTTCATCCTGAGGGGGTGGTAGAAA
GAGCTTATTGCTCTGNAAGCGGTGCGTTGAGCCAGGGACCACGAAGCCCG
GCGTTGGAGTTGGGTAAGGATCCGGTACGGCTACTCTT
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