EY728660

Overview
NameEY728660
Unique NameEY728660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length910
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728660 vs. ExPASy Swiss-Prot
Match: GLGC_SYNP6 (Glucose-1-phosphate adenylyltransferase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=glgC PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.172e-41
Identity = 92/168 (54.76%), Postives = 118/168 (70.24%), Query Frame = 1
Query:  364 LYL*GGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGG*QNEGLVEVLGCQRSPENPNGFQGTADAVRQYLWVVEGHNGLGMPGVGGERLVRRDFEK*CRR-QEKRSGFQEVWLAREEKRASGLGVLRLMTKGR 864
            + L GGAG+RLYPLTK+RAKPAVPL   YRLIDIPVSNC+N++I+KIYVLTQFNSASLNRHLS+ Y  N+      G VEVL  Q +PENPN FQGTADAVRQYLW+++  +      + G+ L R D+ +  +R ++  +      L  +EKRAS  G+++L   GR
Sbjct:    7 IILGGGAGSRLYPLTKQRAKPAVPLAGKYRLIDIPVSNCINADINKIYVLTQFNSASLNRHLSQTY--NLSSGFGNGFVEVLAAQITPENPNWFQGTADAVRQYLWLIKEWDVDEYLILSGDHLYRMDYSQFIQRHRDTNADITLSVLPIDEKRASDFGLMKLDGSGR 172          
BLAST of EY728660 vs. ExPASy Swiss-Prot
Match: GLGC_SYNE7 (Glucose-1-phosphate adenylyltransferase OS=Synechococcus elongatus (strain PCC 7942) GN=glgC PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.172e-41
Identity = 92/168 (54.76%), Postives = 118/168 (70.24%), Query Frame = 1
Query:  364 LYL*GGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGG*QNEGLVEVLGCQRSPENPNGFQGTADAVRQYLWVVEGHNGLGMPGVGGERLVRRDFEK*CRR-QEKRSGFQEVWLAREEKRASGLGVLRLMTKGR 864
            + L GGAG+RLYPLTK+RAKPAVPL   YRLIDIPVSNC+N++I+KIYVLTQFNSASLNRHLS+ Y  N+      G VEVL  Q +PENPN FQGTADAVRQYLW+++  +      + G+ L R D+ +  +R ++  +      L  +EKRAS  G+++L   GR
Sbjct:    7 IILGGGAGSRLYPLTKQRAKPAVPLAGKYRLIDIPVSNCINADINKIYVLTQFNSASLNRHLSQTY--NLSSGFGNGFVEVLAAQITPENPNWFQGTADAVRQYLWLIKEWDVDEYLILSGDHLYRMDYSQFIQRHRDTNADITLSVLPIDEKRASDFGLMKLDGSGR 172          
BLAST of EY728660 vs. ExPASy Swiss-Prot
Match: GLGC_NOSP7 (Glucose-1-phosphate adenylyltransferase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=glgC PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.172e-41
Identity = 93/168 (55.36%), Postives = 118/168 (70.24%), Query Frame = 1
Query:  364 LYL*GGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGG*QNEGLVEVLGCQRSPENPNGFQGTADAVRQYLWVVEGHNGLGMPGVGGERLVRRDFEK*CRR-QEKRSGFQEVWLAREEKRASGLGVLRLMTKGR 864
            + L GGAGTRLYPLTK RAKPAVP+   YRLIDIPVSNC+NS I KIYVLTQFNSASLNRH++R Y  N  G  NEG VEVL  Q++PENPN FQGTADAVRQYLW++E  +      + G+ L R D+ +  +R ++  +      +  +E+RAS  G++++   GR
Sbjct:    7 IILGGGAGTRLYPLTKLRAKPAVPVAGKYRLIDIPVSNCINSEIFKIYVLTQFNSASLNRHIARTY--NFTG-FNEGFVEVLAAQQTPENPNWFQGTADAVRQYLWLMEEWDVEEYLILSGDHLYRMDYRQFIQRHRDTGADITLSVIPIDERRASDFGLMKIDDSGR 171          
BLAST of EY728660 vs. ExPASy Swiss-Prot
Match: GLGC_ANAVT (Glucose-1-phosphate adenylyltransferase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=glgC PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.574e-40
Identity = 91/168 (54.17%), Postives = 117/168 (69.64%), Query Frame = 1
Query:  364 LYL*GGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGG*QNEGLVEVLGCQRSPENPNGFQGTADAVRQYLWVVEGHNGLGMPGVGGERLVRRDFEK*CRR-QEKRSGFQEVWLAREEKRASGLGVLRLMTKGR 864
            + L GGAGTRLYPLTK RAKPAVP+   YRLIDIPVSNC+NS I KIYVLTQFNSASLNRH++R Y  N  G  +EG VEVL  Q++PENPN FQGTADAVRQYLW+++  +      + G+ L R D+    +R +E  +      +  +++RAS  G++++   GR
Sbjct:    7 IILGGGAGTRLYPLTKLRAKPAVPVAGKYRLIDIPVSNCINSEIFKIYVLTQFNSASLNRHIARTY--NFSG-FSEGFVEVLAAQQTPENPNWFQGTADAVRQYLWMLQEWDVDEFLILSGDHLYRMDYRLFIQRHRETNADITLSVIPIDDRRASDFGLMKIDNSGR 171          
BLAST of EY728660 vs. ExPASy Swiss-Prot
Match: GLGC_ANASP (Glucose-1-phosphate adenylyltransferase OS=Anabaena sp. (strain PCC 7120) GN=glgC PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.574e-40
Identity = 91/168 (54.17%), Postives = 117/168 (69.64%), Query Frame = 1
Query:  364 LYL*GGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGG*QNEGLVEVLGCQRSPENPNGFQGTADAVRQYLWVVEGHNGLGMPGVGGERLVRRDFEK*CRR-QEKRSGFQEVWLAREEKRASGLGVLRLMTKGR 864
            + L GGAGTRLYPLTK RAKPAVP+   YRLIDIPVSNC+NS I KIYVLTQFNSASLNRH++R Y  N  G  +EG VEVL  Q++PENPN FQGTADAVRQYLW+++  +      + G+ L R D+    +R +E  +      +  +++RAS  G++++   GR
Sbjct:    7 IILGGGAGTRLYPLTKLRAKPAVPVAGKYRLIDIPVSNCINSEIFKIYVLTQFNSASLNRHIARTY--NFSG-FSEGFVEVLAAQQTPENPNWFQGTADAVRQYLWMLQEWDVDEFLILSGDHLYRMDYRLFIQRHRETNADITLSVIPIDDRRASDFGLMKIDNSGR 171          
BLAST of EY728660 vs. ExPASy Swiss-Prot
Match: GLGC_CYAP7 (Glucose-1-phosphate adenylyltransferase OS=Cyanothece sp. (strain PCC 7424) GN=glgC PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.580e-40
Identity = 93/168 (55.36%), Postives = 117/168 (69.64%), Query Frame = 1
Query:  364 LYL*GGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGG*QNEGLVEVLGCQRSPENPNGFQGTADAVRQYLWVVEGHNGLGMPGVGGERLVRRDFEK*CRR-QEKRSGFQEVWLAREEKRASGLGVLRLMTKGR 864
            + L GGAGTRLYPLTK RAKPAVPL   YRLIDIPVSNC+NS I+KIYVLTQFNSASLNRHLSR Y  N  G  N+  VEVL  Q++ ENP+ FQGTADAVRQYLW++E  +      + G+ L R D+ +  +R +E ++      +  +EKRAS  G++++    R
Sbjct:    7 IILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPVSNCINSEITKIYVLTQFNSASLNRHLSRTY--NFTG-FNDEFVEVLAAQQTAENPSWFQGTADAVRQYLWLMEEWDVDEYLILSGDHLYRMDYREYIQRHRETKADITLSVVPIDEKRASSFGLMKIDDNAR 171          
BLAST of EY728660 vs. ExPASy Swiss-Prot
Match: GLGC_SYNY3 (Glucose-1-phosphate adenylyltransferase OS=Synechocystis sp. (strain PCC 6803) GN=glgC PE=1 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 2.273e-39
Identity = 91/168 (54.17%), Postives = 117/168 (69.64%), Query Frame = 1
Query:  364 LYL*GGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGG*QNEGLVEVLGCQRSPENPNGFQGTADAVRQYLWVVEGHNGLGMPGVGGERLVRRDFEK*CRR-QEKRSGFQEVWLAREEKRASGLGVLRLMTKGR 864
            + L GGAGTRLYPLTK RAKPAVPL   YRLIDIPVSNC+NS I KIYVLTQFNSASLNRH+SRAY  N  G Q EG VEVL  Q++ +NP+ FQGTADAVRQYLW+    +      + G+ L R D+ +  +R +E  +      +  ++++A  LG++++  +GR
Sbjct:   17 IILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPVSNCINSEIVKIYVLTQFNSASLNRHISRAY--NFSGFQ-EGFVEVLAAQQTKDNPDWFQGTADAVRQYLWLFREWDVDEYLILSGDHLYRMDYAQFVKRHRETNADITLSVVPVDDRKAPELGLMKIDAQGR 181          
BLAST of EY728660 vs. ExPASy Swiss-Prot
Match: GLGC_CYAP4 (Glucose-1-phosphate adenylyltransferase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=glgC PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 6.613e-39
Identity = 93/178 (52.25%), Postives = 119/178 (66.85%), Query Frame = 1
Query:  364 LYL*GGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGG*QNEGLVEVLGCQRSPENPNGFQGTADAVRQYLWVVEGHNGLGMPGVGGERLVRRDFEK*C-RRQEKRSGFQEVWLAREEKRASGLGVLRLMTKGR-GAVGVEPRG 891
            + L GGAGTRLYPLTK+RAKPAVPL   YRLIDIPVSNC+NS I+ +YVLTQFNSASLNRH++R Y  N  G  ++G VEVL  Q++PENP+ FQGTADAVRQYLW++          + G+ L R D+     R ++  +      L  EE+ AS  G+L++   GR  A   +P+G
Sbjct:    7 IILGGGAGTRLYPLTKQRAKPAVPLAGKYRLIDIPVSNCINSEITHVYVLTQFNSASLNRHIARTY--NFSG-FSDGFVEVLAAQQTPENPDWFQGTADAVRQYLWLLSDWEVDYYLILSGDHLYRMDYRLFVNRHRDTNADITLSVLPVEEQVASSFGLLQVDHSGRVTAFSEKPQG 181          
BLAST of EY728660 vs. ExPASy Swiss-Prot
Match: GLGC_CYAA5 (Glucose-1-phosphate adenylyltransferase OS=Cyanothece sp. (strain ATCC 51142) GN=glgC PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.599e-38
Identity = 90/168 (53.57%), Postives = 114/168 (67.86%), Query Frame = 1
Query:  364 LYL*GGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGG*QNEGLVEVLGCQRSPENPNGFQGTADAVRQYLWVVEGHNGLGMPGVGGERLVRRDFEK*CRR-QEKRSGFQEVWLAREEKRASGLGVLRLMTKGR 864
            + L GGAGTRLYPLTK RAKPAVPL   YRLIDIPVSNC+N+ I KIYVLTQFNSASLNRHL+R Y  N  G  ++G VEVL  Q++ ENP+ FQGTADAVRQY W+ +  +      + G+ L R D+    +R +E  +      +  +EKRAS  G++++   GR
Sbjct:    7 IILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPVSNCINAEILKIYVLTQFNSASLNRHLTRTY--NFTG-FHDGFVEVLAAQQTTENPSWFQGTADAVRQYGWLFDEWDVDEYLILSGDHLYRMDYSDFVKRHRETGADITLSVVPIDEKRASSFGLMKIDDNGR 171          
BLAST of EY728660 vs. ExPASy Swiss-Prot
Match: GLGC_SYNP2 (Glucose-1-phosphate adenylyltransferase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=glgC PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 7.312e-38
Identity = 91/171 (53.22%), Postives = 113/171 (66.08%), Query Frame = 1
Query:  361 GLYL*GGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGG*QNEGLVEVLGCQRSPENPNGFQGTADAVRQYLWVVEGHNGLGMPGVGGERLVRRDFEK*CRRQEKRSGFQEVWLA---REEKRASGLGVLRLMTKGR 864
            G+ L GGAGTRLYPLTK RAKPAVPL   YRLIDIPVSNC+NS I KIY+LTQFNSASLNRH+SR Y  N  G   EG  EVL  Q++ ENP+ FQGTADAVRQY W++E  +      + G+ L R D+ +  +R   R    ++ L+     EK A   G++++   GR
Sbjct:    6 GIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPVSNCINSEIHKIYILTQFNSASLNRHISRTY--NFTG-FTEGFTEVLAAQQTKENPDWFQGTADAVRQYSWLLEDWDVDEYIILSGDHLYRMDYREFIQRH--RDTGADITLSVVPVGEKVAPAFGLMKIDANGR 171          
The following BLAST results are available for this feature:
BLAST of EY728660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 305
Match NameE-valueIdentityDescription
GLGC_SYNP63.172e-4154.76Glucose-1-phosphate adenylyltransferase OS=Synecho... [more]
GLGC_SYNE73.172e-4154.76Glucose-1-phosphate adenylyltransferase OS=Synecho... [more]
GLGC_NOSP73.172e-4155.36Glucose-1-phosphate adenylyltransferase OS=Nostoc ... [more]
GLGC_ANAVT1.574e-4054.17Glucose-1-phosphate adenylyltransferase OS=Anabaen... [more]
GLGC_ANASP1.574e-4054.17Glucose-1-phosphate adenylyltransferase OS=Anabaen... [more]
GLGC_CYAP74.580e-4055.36Glucose-1-phosphate adenylyltransferase OS=Cyanoth... [more]
GLGC_SYNY32.273e-3954.17Glucose-1-phosphate adenylyltransferase OS=Synecho... [more]
GLGC_CYAP46.613e-3952.25Glucose-1-phosphate adenylyltransferase OS=Cyanoth... [more]
GLGC_CYAA55.599e-3853.57Glucose-1-phosphate adenylyltransferase OS=Cyanoth... [more]
GLGC_SYNP27.312e-3853.22Glucose-1-phosphate adenylyltransferase OS=Synecho... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-006-H01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728660 ID=EY728660; Name=EY728660; organism=Citrus sinensis; type=EST; length=910bp
CCACGCGTCCGCCCATGCGTCCGCACACTCACTCAGGCTCAGCTCGCTTA
ACGATTACTGTTAACGTTAACAGATTGTACCGATTAATGGCGAGTATGGC
GTCGATCGGATCGCTCAAAGTTCCGTCATCTCCGTCAACTGCAGCAACGT
CGTCTAACTCCAACAATCACAGCCGCAGGAGTGTGGTTAAACGACTGGCG
TTCTCGTCGTCTCAGCTCTCCGGTGACAAGATTTTTTCTAAAGCTGTCAC
CGGTGATCGGCGAAGGGAGAGGCGTCCGATCGTTGTGTCTCCTCAAGCGG
TGTCGGATTCGAAAAATTCGCAGACTTGCCTTGATCCTGAAGCCAGTCGA
AGTGTTTTGGGGATTATACTTGTGAGGTGGAGCAGGGACTCGCTTGTATC
CACTTACGAAGAAGAGGGCGAAGCCTGCTGTTCCATTGGGAGCTAATTAC
AGGCTGATTGATATTCCTGTGAGCAATTGTTTGAATAGTAACATTTCAAA
GATCTATGTTCTCACTCAGTTCAATTCTGCGTCCCTGAATCGTCACCTAT
CGAGGGCGTATGCTAGCAACATGGGTGGTTGACAGAACGAAGGATTGGTT
GAAGTTCTTGGCTGCCAGCGGAGTCCAGAGAATCCCAATGGGTTTCAGGG
TACAGCTGATGCTGTGAGGCAGTATTTGTGGGTGGTTGAGGGACACAATG
GTCTGGGAATGCCCGGTGTGGGTGGTGAACGTTTGGTGCGAAGGGACTTT
GAAAAATGATGCAGGCGGCAAGAGAAACGATCCGGGTTTCAAGAAGTCTG
GCTGGCCAGGGAAGAAAAGAGGGCCAGTGGCTTGGGGGTGCTGAGGTTGA
TGACTAAGGGGCGGGGTGCAGTTGGTGTGGAACCGCGGGGGGGCCGGTGG
GAGAGGGAGG
back to top