EY728660

Overview
NameEY728660
Unique NameEY728660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length910
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728660 vs. ExPASy Swiss-Prot
Match: GLGC_MYCLB (Glucose-1-phosphate adenylyltransferase OS=Mycobacterium leprae (strain Br4923) GN=glgC PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.214e-16
Identity = 53/132 (40.15%), Postives = 77/132 (58.33%), Query Frame = 1
Query:  361 GLYL*GGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGG*QNEGLVEVLGCQRSPENPNGFQGTADAVRQYLWVVEGHNGLGMPGVGGERLVRRDFEK 756
            G+ L GG G RLYPLT  RAKPAVP G  YRL+D  +SN +N+   +I VLTQ+ S SL+RH+S+ +   + G   E +  V   QR    P+ + G+ADA+ Q L ++   +   +   G + + R D E+
Sbjct:    9 GIVLAGGEGKRLYPLTADRAKPAVPFGGAYRLVDFVLSNLVNARYLRICVLTQYKSHSLDRHISQNW--RLSGLAGEYITPVPAQQRF--GPHWYTGSADAIYQSLNLIYDEDPDYLVVFGADHVYRMDPEQ 136          
BLAST of EY728660 vs. ExPASy Swiss-Prot
Match: GLGC_GEOLS (Glucose-1-phosphate adenylyltransferase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=glgC PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.214e-16
Identity = 49/128 (38.28%), Postives = 75/128 (58.59%), Query Frame = 1
Query:  364 LYL*GGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGG*QNEGLVEVLGCQRSPENPNGFQGTADAVRQYLWVVEGHNGLGMPGVGGERLVRRD 747
            + L GG G RL PLT +RAKP+V  G  Y++ID  +SN  NS I ++Y+LTQ+ + SLN+H+  ++    G    E  V  +  + S ++   F+GTADA+ QYL  VE  +   +   GG+ + + D
Sbjct:   14 MVLAGGKGERLMPLTLRRAKPSVTFGGKYKIIDFVLSNLFNSGIRRMYILTQYRAYSLNKHIRESWGKWTG--LGEFCV-AISPETSSDSEQWFKGTADAILQYLRFVETADADYVAVFGGDHIYKMD 138          
BLAST of EY728660 vs. ExPASy Swiss-Prot
Match: GLGC_SHEFN (Glucose-1-phosphate adenylyltransferase OS=Shewanella frigidimarina (strain NCIMB 400) GN=glgC PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.585e-16
Identity = 52/134 (38.81%), Postives = 77/134 (57.46%), Query Frame = 1
Query:  358 WGLYL*GGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRA---YASNMGG*QNEGLVEVLGCQRSPENPNGFQGTADAVRQYLWVVEGHNGLGMPGVGGERLVRRDF 750
            + L L GG G+RLY LT  RAKPA+  G  YR+ID P+SNC+NS I ++ V+TQ+ S SL RH++R    +   +G       VE+L   +     N +QGTADAV Q + ++       +  + G+ + R D+
Sbjct:   15 YALILAGGRGSRLYELTDWRAKPALYFGGKYRIIDFPLSNCINSGIRRVGVVTQYKSHSLIRHVTRGWGHFKKELG-----ESVEILPASQQTSG-NWYQGTADAVFQNIDIIRQEIPKYVMILSGDHIYRMDY 142          
BLAST of EY728660 vs. ExPASy Swiss-Prot
Match: GLGC_PECCP (Glucose-1-phosphate adenylyltransferase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=glgC PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.585e-16
Identity = 51/131 (38.93%), Postives = 78/131 (59.54%), Query Frame = 1
Query:  364 LYL*GGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGG*QNEGLVEVLGCQRSPENPNGFQGTADAVRQYLWVVEGHNGLGMPGVGGERLVRRDFEK 756
            L L GG GTRL  LT  RAKPAV  G  +R+ID  +SNCLNS I +I V+TQ+ S +L +H+ R + S +    NE  V++L  Q+     + ++GTADAV Q L ++  +    +  + G+ + + D+ +
Sbjct:   23 LILAGGRGTRLKGLTALRAKPAVHFGGKFRIIDFALSNCLNSGIRRIGVITQYQSHTLVQHIQRGW-SFLNAEMNE-FVDLLPAQQRNATDHWYRGTADAVCQNLDIIRRYRAEYVVILAGDHIYKMDYSR 151          
BLAST of EY728660 vs. ExPASy Swiss-Prot
Match: GLGC_MYCUA (Glucose-1-phosphate adenylyltransferase OS=Mycobacterium ulcerans (strain Agy99) GN=glgC PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.585e-16
Identity = 54/132 (40.91%), Postives = 76/132 (57.58%), Query Frame = 1
Query:  361 GLYL*GGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGG*QNEGLVEVLGCQRSPENPNGFQGTADAVRQYLWVVEGHNGLGMPGVGGERLVRRDFEK 756
            G+ L GG G RLYPLT  RAKPAVP G  YRLID  +SN +N+   +I VLTQ+ S SL+RH+S+ +   + G   E +  V   QR    P  + G+ADA+ Q L ++   +   +   G + + R D E+
Sbjct:    9 GIVLAGGEGKRLYPLTADRAKPAVPFGGAYRLIDFVLSNLVNARYLRICVLTQYKSHSLDRHISQNW--RLSGLAGEYITPVPAQQRL--GPRWYTGSADAIYQSLNLIYDEDPDYIVVFGADHVYRMDPEQ 136          
BLAST of EY728660 vs. ExPASy Swiss-Prot
Match: GLGC_MYCTU (Glucose-1-phosphate adenylyltransferase OS=Mycobacterium tuberculosis GN=glgC PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.585e-16
Identity = 54/132 (40.91%), Postives = 76/132 (57.58%), Query Frame = 1
Query:  361 GLYL*GGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGG*QNEGLVEVLGCQRSPENPNGFQGTADAVRQYLWVVEGHNGLGMPGVGGERLVRRDFEK 756
            G+ L GG G RLYPLT  RAKPAVP G  YRLID  +SN +N+   +I VLTQ+ S SL+RH+S+ +   + G   E +  V   QR    P  + G+ADA+ Q L ++   +   +   G + + R D E+
Sbjct:    9 GIVLAGGEGKRLYPLTADRAKPAVPFGGAYRLIDFVLSNLVNARYLRICVLTQYKSHSLDRHISQNW--RLSGLAGEYITPVPAQQRL--GPRWYTGSADAIYQSLNLIYDEDPDYIVVFGADHVYRMDPEQ 136          
BLAST of EY728660 vs. ExPASy Swiss-Prot
Match: GLGC_MYCTA (Glucose-1-phosphate adenylyltransferase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=glgC PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.585e-16
Identity = 54/132 (40.91%), Postives = 76/132 (57.58%), Query Frame = 1
Query:  361 GLYL*GGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGG*QNEGLVEVLGCQRSPENPNGFQGTADAVRQYLWVVEGHNGLGMPGVGGERLVRRDFEK 756
            G+ L GG G RLYPLT  RAKPAVP G  YRLID  +SN +N+   +I VLTQ+ S SL+RH+S+ +   + G   E +  V   QR    P  + G+ADA+ Q L ++   +   +   G + + R D E+
Sbjct:    9 GIVLAGGEGKRLYPLTADRAKPAVPFGGAYRLIDFVLSNLVNARYLRICVLTQYKSHSLDRHISQNW--RLSGLAGEYITPVPAQQRL--GPRWYTGSADAIYQSLNLIYDEDPDYIVVFGADHVYRMDPEQ 136          
BLAST of EY728660 vs. ExPASy Swiss-Prot
Match: GLGC_MYCPA (Glucose-1-phosphate adenylyltransferase OS=Mycobacterium paratuberculosis GN=glgC PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.585e-16
Identity = 54/132 (40.91%), Postives = 76/132 (57.58%), Query Frame = 1
Query:  361 GLYL*GGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGG*QNEGLVEVLGCQRSPENPNGFQGTADAVRQYLWVVEGHNGLGMPGVGGERLVRRDFEK 756
            G+ L GG G RLYPLT  RAKPAVP G  YRLID  +SN +N+   +I VLTQ+ S SL+RH+S+ +   + G   E +  V   QR    P  + G+ADA+ Q L ++   +   +   G + + R D E+
Sbjct:    9 GIVLAGGEGKRLYPLTADRAKPAVPFGGAYRLIDFVLSNLVNARYLRICVLTQYKSHSLDRHISQNW--RLSGLAGEYITPVPAQQRL--GPRWYTGSADAIYQSLNLIYDEDPDYIVVFGADHVYRMDPEQ 136          
BLAST of EY728660 vs. ExPASy Swiss-Prot
Match: GLGC_MYCMM (Glucose-1-phosphate adenylyltransferase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=glgC PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.585e-16
Identity = 54/132 (40.91%), Postives = 76/132 (57.58%), Query Frame = 1
Query:  361 GLYL*GGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGG*QNEGLVEVLGCQRSPENPNGFQGTADAVRQYLWVVEGHNGLGMPGVGGERLVRRDFEK 756
            G+ L GG G RLYPLT  RAKPAVP G  YRLID  +SN +N+   +I VLTQ+ S SL+RH+S+ +   + G   E +  V   QR    P  + G+ADA+ Q L ++   +   +   G + + R D E+
Sbjct:    9 GIVLAGGEGKRLYPLTADRAKPAVPFGGAYRLIDFVLSNLVNARYLRICVLTQYKSHSLDRHISQNW--RLSGLAGEYITPVPAQQRL--GPRWYTGSADAIYQSLNLIYDEDPDYIVVFGADHVYRMDPEQ 136          
BLAST of EY728660 vs. ExPASy Swiss-Prot
Match: GLGC_MYCBT (Glucose-1-phosphate adenylyltransferase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=glgC PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.585e-16
Identity = 54/132 (40.91%), Postives = 76/132 (57.58%), Query Frame = 1
Query:  361 GLYL*GGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGG*QNEGLVEVLGCQRSPENPNGFQGTADAVRQYLWVVEGHNGLGMPGVGGERLVRRDFEK 756
            G+ L GG G RLYPLT  RAKPAVP G  YRLID  +SN +N+   +I VLTQ+ S SL+RH+S+ +   + G   E +  V   QR    P  + G+ADA+ Q L ++   +   +   G + + R D E+
Sbjct:    9 GIVLAGGEGKRLYPLTADRAKPAVPFGGAYRLIDFVLSNLVNARYLRICVLTQYKSHSLDRHISQNW--RLSGLAGEYITPVPAQQRL--GPRWYTGSADAIYQSLNLIYDEDPDYIVVFGADHVYRMDPEQ 136          
The following BLAST results are available for this feature:
BLAST of EY728660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 305
Match NameE-valueIdentityDescription
GLGC_MYCLB1.214e-1640.15Glucose-1-phosphate adenylyltransferase OS=Mycobac... [more]
GLGC_GEOLS1.214e-1638.28Glucose-1-phosphate adenylyltransferase OS=Geobact... [more]
GLGC_SHEFN1.585e-1638.81Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_PECCP1.585e-1638.93Glucose-1-phosphate adenylyltransferase OS=Pectoba... [more]
GLGC_MYCUA1.585e-1640.91Glucose-1-phosphate adenylyltransferase OS=Mycobac... [more]
GLGC_MYCTU1.585e-1640.91Glucose-1-phosphate adenylyltransferase OS=Mycobac... [more]
GLGC_MYCTA1.585e-1640.91Glucose-1-phosphate adenylyltransferase OS=Mycobac... [more]
GLGC_MYCPA1.585e-1640.91Glucose-1-phosphate adenylyltransferase OS=Mycobac... [more]
GLGC_MYCMM1.585e-1640.91Glucose-1-phosphate adenylyltransferase OS=Mycobac... [more]
GLGC_MYCBT1.585e-1640.91Glucose-1-phosphate adenylyltransferase OS=Mycobac... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-006-H01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728660 ID=EY728660; Name=EY728660; organism=Citrus sinensis; type=EST; length=910bp
CCACGCGTCCGCCCATGCGTCCGCACACTCACTCAGGCTCAGCTCGCTTA
ACGATTACTGTTAACGTTAACAGATTGTACCGATTAATGGCGAGTATGGC
GTCGATCGGATCGCTCAAAGTTCCGTCATCTCCGTCAACTGCAGCAACGT
CGTCTAACTCCAACAATCACAGCCGCAGGAGTGTGGTTAAACGACTGGCG
TTCTCGTCGTCTCAGCTCTCCGGTGACAAGATTTTTTCTAAAGCTGTCAC
CGGTGATCGGCGAAGGGAGAGGCGTCCGATCGTTGTGTCTCCTCAAGCGG
TGTCGGATTCGAAAAATTCGCAGACTTGCCTTGATCCTGAAGCCAGTCGA
AGTGTTTTGGGGATTATACTTGTGAGGTGGAGCAGGGACTCGCTTGTATC
CACTTACGAAGAAGAGGGCGAAGCCTGCTGTTCCATTGGGAGCTAATTAC
AGGCTGATTGATATTCCTGTGAGCAATTGTTTGAATAGTAACATTTCAAA
GATCTATGTTCTCACTCAGTTCAATTCTGCGTCCCTGAATCGTCACCTAT
CGAGGGCGTATGCTAGCAACATGGGTGGTTGACAGAACGAAGGATTGGTT
GAAGTTCTTGGCTGCCAGCGGAGTCCAGAGAATCCCAATGGGTTTCAGGG
TACAGCTGATGCTGTGAGGCAGTATTTGTGGGTGGTTGAGGGACACAATG
GTCTGGGAATGCCCGGTGTGGGTGGTGAACGTTTGGTGCGAAGGGACTTT
GAAAAATGATGCAGGCGGCAAGAGAAACGATCCGGGTTTCAAGAAGTCTG
GCTGGCCAGGGAAGAAAAGAGGGCCAGTGGCTTGGGGGTGCTGAGGTTGA
TGACTAAGGGGCGGGGTGCAGTTGGTGTGGAACCGCGGGGGGGCCGGTGG
GAGAGGGAGG
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