EY728660

Overview
NameEY728660
Unique NameEY728660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length910
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728660 vs. ExPASy Swiss-Prot
Match: GLGL2_WHEAT (Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Triticum aestivum GN=AGP-L PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.805e-28
Identity = 76/171 (44.44%), Postives = 107/171 (62.57%), Query Frame = 1
Query:  376 GGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGG*QN--EGLVEVLGCQRSPENPNG-FQGTADAVRQYLWVVEG-HNGLGMPGV---GGERLVRRDFEK*CRRQ-EKRSGFQEVWLAREEKRASGLGVLRLMTKGR 864
            GG GT+L+PLT  RA PAVP+G  YRLIDIP+SNC NS I+KI+V+TQFNSASLNRH+ R Y   +GG  N  +G VEVL   + P    G F+GTADAVR+++WV+E  +    +  +    G++L R D+ +  ++  +  +          E RAS  G+++  + GR
Sbjct:   97 GGTGTQLFPLTSTRATPAVPIGGCYRLIDIPMSNCFNSGINKIFVMTQFNSASLNRHIHRTY---LGGGINFTDGSVEVLAATQMPGEAAGWFRGTADAVRKFIWVLEDYYKNKSIEHILILSGDQLYRMDYMELVQKHVDDNADITLSCAPVGESRASEYGLVKFDSSGR 264          
BLAST of EY728660 vs. ExPASy Swiss-Prot
Match: GLGL4_ARATH (Probable glucose-1-phosphate adenylyltransferase large subunit, chloroplastic OS=Arabidopsis thaliana GN=At2g21590 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.358e-28
Identity = 77/176 (43.75%), Postives = 103/176 (58.52%), Query Frame = 1
Query:  364 LYL*GGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAY---ASNMGG*QNEGLVEVLGCQRSP--ENPNGFQGTADAVRQYLWVVEGHNGLGMPGV---GGERLVRRDFEK*CRRQ-EKRSGFQEVWLAREEKRASGLGVLRLMTKGR 864
            + L GG G +L+PLT + A PAVP+G  YRLIDIP+SNC+NS I+KI+VLTQFNSASLNRHL+R Y     N GG    G VEVL   ++P       FQGTADAVR++LWV E      +  +    G+ L R ++    +   +  +          E RAS  G++++   GR
Sbjct:   94 IILGGGNGAKLFPLTMRAATPAVPVGGCYRLIDIPMSNCINSCINKIFVLTQFNSASLNRHLARTYFGNGINFGG----GFVEVLAATQTPGEAGKKWFQGTADAVRKFLWVFEDAKNRNIENILILSGDHLYRMNYMDFVQSHVDSNADITLSCAPVSESRASNFGLVKIDRGGR 265          
BLAST of EY728660 vs. ExPASy Swiss-Prot
Match: GLGL1_MAIZE (Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic/amyloplastic OS=Zea mays GN=SH2 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.079e-28
Identity = 73/173 (42.20%), Postives = 110/173 (63.58%), Query Frame = 1
Query:  364 LYL*GGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGG*QNEGLVEVLGCQRSPENPNG-FQGTADAVRQYLWVVE---GHNGL-GMPGVGGERLVRRDFEK*CRRQEKRSGFQEVWLAR-EEKRASGLGVLRLMTKGR 864
            + L GG G++L+PLT  RA PAVP+G  YRLIDIP+SNC NS I+KI+V++QFNS SLNRH+ R Y    G    +G V+VL   + PE P G FQGTAD++R+++WV+E    H  +  +  + G++L R ++ +  ++  +      +  A  +E RAS  G++++   GR
Sbjct:   87 IILGGGTGSQLFPLTSTRATPAVPVGGCYRLIDIPMSNCFNSGINKIFVMSQFNSTSLNRHIHRTYLEG-GINFADGSVQVLAATQMPEEPAGWFQGTADSIRKFIWVLEDYYSHKSIDNIVILSGDQLYRMNYMELVQKHVEDDADITISCAPVDESRASKNGLVKIDHTGR 258          
BLAST of EY728660 vs. ExPASy Swiss-Prot
Match: GLGL3_WHEAT (Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic (Fragment) OS=Triticum aestivum GN=AGA.7 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.404e-27
Identity = 75/171 (43.86%), Postives = 105/171 (61.40%), Query Frame = 1
Query:  376 GGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGG*QN--EGLVEVLGCQRSPENPNG-FQGTADAVRQYLWVVEG-HNGLGMPGV---GGERLVRRDFEK*CRRQ-EKRSGFQEVWLAREEKRASGLGVLRLMTKGR 864
            GG GT+L+PLT  RA PAVP+G  YRLIDIP+SNC NS I+KI+V+TQFNSASLNRH+ R Y   +GG  N  +G VEVL   + P    G F+GTADA R+ +WV+E  +    +  +    G++L R D+ +  ++  +  +          E RAS  G+++  + GR
Sbjct:   78 GGTGTQLFPLTSTRATPAVPIGGCYRLIDIPMSNCFNSGINKIFVMTQFNSASLNRHIHRTY---LGGGINFTDGSVEVLAATQMPGEAAGWFRGTADAWRKIIWVLEDYYKNKSIEHILILSGDQLYRMDYMELVQKHVDDNADITLSCAPVGESRASEYGLVKFDSSGR 245          
BLAST of EY728660 vs. ExPASy Swiss-Prot
Match: GLGL2_SOLTU (Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS2 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.385e-26
Identity = 68/167 (40.72%), Postives = 99/167 (59.28%), Query Frame = 1
Query:  376 GGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGG*QNEGLVEVL-GCQRSPENPNGFQGTADAVRQYLWVVEGHNGLGMPGV---GGERLVRRDFEK*CRRQ-EKRSGFQEVWLAREEKRASGLGVLRLMTKG 861
            GG GTRL+PLT +RAKPAVP+G  YRLID+P+SNC+NS I KI++LTQFNS SLNRHL+  Y    G    +G VEVL G Q   +    +   ADAVR+++WV E      +  +    G+ L R ++    ++  +  +      +  ++ RAS  G++++   G
Sbjct:   95 GGVGTRLFPLTSRRAKPAVPIGGCYRLIDVPMSNCINSGIRKIFILTQFNSFSLNRHLA-TYNFGNGVGFGDGFVEVLAGTQTPGDGRKMWFQAADAVREFIWVFENQKNKNVEHIIILSGDHLYRMNYMDFVQKHIDTNADITVSCVPMDDGRASDFGLMKIDETG 260          
BLAST of EY728660 vs. ExPASy Swiss-Prot
Match: GLGC_ACIBL (Glucose-1-phosphate adenylyltransferase OS=Acidobacteria bacterium (strain Ellin345) GN=glgC PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.219e-21
Identity = 56/142 (39.44%), Postives = 87/142 (61.27%), Query Frame = 1
Query:  361 GLYL*GGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGG*QNEGLVEVLGCQRSPENPNGFQGTADAVRQYLWVVEGHNGLGMPGVGGERLVRRDFEK*CRRQEKRSG 786
            G+ L GGAG RLYPLT+ RAKPAV  G  YR+IDI +SNC+NS + ++Y+LTQ+ + SLNRH+   ++  +G    E  +E+L   +   + N + GTADAV Q ++ +       +  + G+ + + +++    RQ K SG
Sbjct:    6 GVLLAGGAGERLYPLTRDRAKPAVNFGGIYRIIDITLSNCINSGLRRVYILTQYKALSLNRHIREGWSGIVGNELGE-FIEILPPMKR-VSENWYMGTADAVYQNIYSIGSEQPRYVLILSGDHIYKMNYDL-MMRQHKDSG 144          
BLAST of EY728660 vs. ExPASy Swiss-Prot
Match: GLGC_THIDA (Glucose-1-phosphate adenylyltransferase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=glgC PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.363e-20
Identity = 58/132 (43.94%), Postives = 81/132 (61.36%), Query Frame = 1
Query:  364 LYL*GGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYA---SNMGG*QNEGLVEVLGCQRSPENPNGFQGTADAVRQYLWVVEGHNGLGMPGVGGERLVRRDF 750
            L L GG G+RL  LT  RAKPAVP+G  YR+ID P+SNC+NS I +I VLTQ+ S SL RHL RA+    + +G       VE+L  Q+       +QGTADA+ Q L +++ H+   +  +GG+ +   D+
Sbjct:   31 LVLAGGEGSRLKDLTAWRAKPAVPIGGKYRIIDFPLSNCVNSGIRRIGVLTQYKSHSLIRHLQRAWGLMRTEVG-----EFVEILPAQQRTHKKEWYQGTADALFQNLDIMQRHHPEYVLVLGGDHVYTMDY 157          
BLAST of EY728660 vs. ExPASy Swiss-Prot
Match: GLGC_NITEU (Glucose-1-phosphate adenylyltransferase OS=Nitrosomonas europaea GN=glgC PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.980e-20
Identity = 55/129 (42.64%), Postives = 79/129 (61.24%), Query Frame = 1
Query:  364 LYL*GGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGG*QNEGLVEVLGCQRSPENPNGFQGTADAVRQYLWVVEGHNGLGMPGVGGERLVRRDF 750
            L L GG GTRL  LT  RAKPAVP G  +R+ID  +SNC+NS + +I V+TQ+ + SL RH+ R ++   G  Q    +E+L  Q+  E    +QGTADAV Q L ++  HN   +  +GG+ + + D+
Sbjct:   26 LILAGGRGTRLKNLTDWRAKPAVPFGGKFRIIDFTLSNCVNSGVRRIGVVTQYKAQSLIRHIQRGWSFLDGRFQE--FIELLPAQQRTEEGTWYQGTADAVFQNLDILRTHNPGYVLILGGDHIYKMDY 152          
BLAST of EY728660 vs. ExPASy Swiss-Prot
Match: GLGC1_ALHEH (Glucose-1-phosphate adenylyltransferase 1 OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=glgC1 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.532e-19
Identity = 59/161 (36.65%), Postives = 87/161 (54.04%), Query Frame = 1
Query:  364 LYL*GGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGG*QNEGLVEVLGCQRSPENPNGFQGTADAVRQYLWVVEGHNGLGMPGVGGERLVRRDFEK*CRRQEKRSGFQEVWLAR-EEKRASGLGVL 843
            L + GG G RL  LT  R KPAVP G  +RLID P+SNC+NS I +I VLTQ+ + SL +H+ R +    G  +    VE++  Q+  + P  + GTADAV Q + +++ HN   +  + G+ + + D+     R  +      V       KRAS  GV+
Sbjct:   20 LIMAGGRGGRLSNLTDWRTKPAVPFGGKFRLIDFPLSNCINSGIRRIEVLTQYKAHSLIQHIQRGWGFLRG--EFGEFVELVPAQQRMDKPLWYAGTADAVYQNIDIIKAHNPSYVLVLAGDHVYKMDYGGMIARHAESGAAMTVGCVEVPRKRASAFGVM 178          
BLAST of EY728660 vs. ExPASy Swiss-Prot
Match: GLGC_ROSDO (Glucose-1-phosphate adenylyltransferase OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=glgC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.821e-19
Identity = 59/164 (35.98%), Postives = 93/164 (56.71%), Query Frame = 1
Query:  376 GGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGG*QNEGLVEVLGCQRSPENPNGFQGTADAVRQYLWVVEGHNGLGMPGVGGERLVRRDFEK*CRRQEKRSGFQEVWLAREEK-RASGLGVLRLMTKGR 864
            GG G+RLY LT +RAKPA+  G   R+ID P+SN +NS I +I V TQ+ + SL RHL R + S     +NE L ++L   +   + N ++GTADAV Q   ++EG+    +  + G+ + ++D+ +  R   +      V      +  ASG GV+++ T+ R
Sbjct:   19 GGRGSRLYELTDRRAKPAMYFGGKSRIIDFPLSNAVNSGIRRIGVATQYKAHSLIRHLQRGW-SFFRAERNESL-DILPASQQMNDENWYKGTADAVAQNKDIIEGYGPKYIIILAGDHIYKQDYAEMIRHHVESGADVTVGCIEVPRMEASGFGVMKVDTEDR 180          
The following BLAST results are available for this feature:
BLAST of EY728660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 305
Match NameE-valueIdentityDescription
GLGL2_WHEAT1.805e-2844.44Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL4_ARATH2.358e-2843.75Probable glucose-1-phosphate adenylyltransferase l... [more]
GLGL1_MAIZE3.079e-2842.20Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL3_WHEAT3.404e-2743.86Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL2_SOLTU8.385e-2640.72Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGC_ACIBL6.219e-2139.44Glucose-1-phosphate adenylyltransferase OS=Acidoba... [more]
GLGC_THIDA2.363e-2043.94Glucose-1-phosphate adenylyltransferase OS=Thiobac... [more]
GLGC_NITEU8.980e-2042.64Glucose-1-phosphate adenylyltransferase OS=Nitroso... [more]
GLGC1_ALHEH1.532e-1936.65Glucose-1-phosphate adenylyltransferase 1 OS=Alkal... [more]
GLGC_ROSDO5.821e-1935.98Glucose-1-phosphate adenylyltransferase OS=Roseoba... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-006-H01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728660 ID=EY728660; Name=EY728660; organism=Citrus sinensis; type=EST; length=910bp
CCACGCGTCCGCCCATGCGTCCGCACACTCACTCAGGCTCAGCTCGCTTA
ACGATTACTGTTAACGTTAACAGATTGTACCGATTAATGGCGAGTATGGC
GTCGATCGGATCGCTCAAAGTTCCGTCATCTCCGTCAACTGCAGCAACGT
CGTCTAACTCCAACAATCACAGCCGCAGGAGTGTGGTTAAACGACTGGCG
TTCTCGTCGTCTCAGCTCTCCGGTGACAAGATTTTTTCTAAAGCTGTCAC
CGGTGATCGGCGAAGGGAGAGGCGTCCGATCGTTGTGTCTCCTCAAGCGG
TGTCGGATTCGAAAAATTCGCAGACTTGCCTTGATCCTGAAGCCAGTCGA
AGTGTTTTGGGGATTATACTTGTGAGGTGGAGCAGGGACTCGCTTGTATC
CACTTACGAAGAAGAGGGCGAAGCCTGCTGTTCCATTGGGAGCTAATTAC
AGGCTGATTGATATTCCTGTGAGCAATTGTTTGAATAGTAACATTTCAAA
GATCTATGTTCTCACTCAGTTCAATTCTGCGTCCCTGAATCGTCACCTAT
CGAGGGCGTATGCTAGCAACATGGGTGGTTGACAGAACGAAGGATTGGTT
GAAGTTCTTGGCTGCCAGCGGAGTCCAGAGAATCCCAATGGGTTTCAGGG
TACAGCTGATGCTGTGAGGCAGTATTTGTGGGTGGTTGAGGGACACAATG
GTCTGGGAATGCCCGGTGTGGGTGGTGAACGTTTGGTGCGAAGGGACTTT
GAAAAATGATGCAGGCGGCAAGAGAAACGATCCGGGTTTCAAGAAGTCTG
GCTGGCCAGGGAAGAAAAGAGGGCCAGTGGCTTGGGGGTGCTGAGGTTGA
TGACTAAGGGGCGGGGTGCAGTTGGTGTGGAACCGCGGGGGGGCCGGTGG
GAGAGGGAGG
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