EY728653 | Citrus Genome Database

Overview


Name	EY728653
Unique Name	EY728653
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	908

Libraries


Library Name	Type
Sweet orange fruit, development stadium (5 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY728653 vs. ExPASy Swiss-Prot
Match: UBIQ_ACECL (Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.168e-18
Identity = 39/50 (78.00%), Postives = 48/50 (96.00%), Query Frame = 1

Query:  343 MQIFVKTLTGKTITLEVESSDTIDNVKATMQDEEGIPPDEQRLMFAGETI 492
            MQIFVKTLTGKTITLEVESSDT++NVK+ +QD+EGIPPD+QRL+FAG+ +
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGKQL 50

HSP 2 Score: 27.7202 bits (60), Expect = 5.168e-18
Identity = 14/27 (51.85%), Postives = 17/27 (62.96%), Query Frame = 2

Query:  482 GKQLEDGRTLAGFRRQDGVGVECVVML 562
            GKQLEDGRTLA +  Q    +  V+ L
Sbjct:   47 GKQLEDGRTLADYNIQKESTLHLVLRL 73

[Close]

BLAST of EY728653 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYCR (Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.722e-18
Identity = 40/50 (80.00%), Postives = 47/50 (94.00%), Query Frame = 1

Query:  343 MQIFVKTLTGKTITLEVESSDTIDNVKATMQDEEGIPPDEQRLMFAGETI 492
            MQIFVKTLTGKTI LEVESSDTI+NVKA +QD+EGIPPD+QRL+FAG+ +
Sbjct:    1 MQIFVKTLTGKTIALEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 2 Score: 27.7202 bits (60), Expect = 6.722e-18
Identity = 14/27 (51.85%), Postives = 17/27 (62.96%), Query Frame = 2

Query:  482 GKQLEDGRTLAGFRRQDGVGVECVVML 562
            GKQLEDGRTLA +  Q    +  V+ L
Sbjct:   47 GKQLEDGRTLADYNIQKESTLHLVLRL 73

[Close]

BLAST of EY728653 vs. ExPASy Swiss-Prot
Match: UBIQ_ACACA (Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.722e-18
Identity = 40/50 (80.00%), Postives = 47/50 (94.00%), Query Frame = 1

Query:  343 MQIFVKTLTGKTITLEVESSDTIDNVKATMQDEEGIPPDEQRLMFAGETI 492
            MQIFVKTLTGKTITLEVESSDTI+NVK  +QD+EGIPPD+QRL+FAG+ +
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKQKIQDKEGIPPDQQRLIFAGKQL 50

HSP 2 Score: 27.7202 bits (60), Expect = 6.722e-18
Identity = 14/27 (51.85%), Postives = 17/27 (62.96%), Query Frame = 2

Query:  482 GKQLEDGRTLAGFRRQDGVGVECVVML 562
            GKQLEDGRTLA +  Q    +  V+ L
Sbjct:   47 GKQLEDGRTLADYNIQKESTLHLVLRL 73

[Close]

BLAST of EY728653 vs. ExPASy Swiss-Prot
Match: UBIQ_GEOCY (Ubiquitin OS=Geodia cydonium PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 8.743e-18
Identity = 40/50 (80.00%), Postives = 48/50 (96.00%), Query Frame = 1

Query:  343 MQIFVKTLTGKTITLEVESSDTIDNVKATMQDEEGIPPDEQRLMFAGETI 492
            MQIFVKTLTGKTITLEVE+SDTI+NVKA +QD+EGIPPD+QRL+FAG+ +
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 2 Score: 26.5646 bits (57), Expect = 8.743e-18
Identity = 13/27 (48.15%), Postives = 17/27 (62.96%), Query Frame = 2

Query:  482 GKQLEDGRTLAGFRRQDGVGVECVVML 562
            GKQLEDGRTL+ +  Q    +  V+ L
Sbjct:   47 GKQLEDGRTLSDYNIQKESTLHLVLRL 73

[Close]

BLAST of EY728653 vs. ExPASy Swiss-Prot
Match: UBIQ_CAEEL (Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 8.743e-18
Identity = 40/50 (80.00%), Postives = 48/50 (96.00%), Query Frame = 1

Query:  343 MQIFVKTLTGKTITLEVESSDTIDNVKATMQDEEGIPPDEQRLMFAGETI 492
            MQIFVKTLTGKTITLEVE+SDTI+NVKA +QD+EGIPPD+QRL+FAG+ +
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 2 Score: 26.5646 bits (57), Expect = 8.743e-18
Identity = 13/27 (48.15%), Postives = 17/27 (62.96%), Query Frame = 2

Query:  482 GKQLEDGRTLAGFRRQDGVGVECVVML 562
            GKQLEDGRTL+ +  Q    +  V+ L
Sbjct:   47 GKQLEDGRTLSDYNIQKESTLHLVLRL 73

[Close]

BLAST of EY728653 vs. ExPASy Swiss-Prot
Match: UBIQ_AGLNE (Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.137e-17
Identity = 40/50 (80.00%), Postives = 47/50 (94.00%), Query Frame = 1

Query:  343 MQIFVKTLTGKTITLEVESSDTIDNVKATMQDEEGIPPDEQRLMFAGETI 492
            MQIFVKTLTGKTITLEVESSDTI+NVK  +QD+EGIPPD+QRL+FAG+ +
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQL 50

HSP 2 Score: 26.5646 bits (57), Expect = 1.137e-17
Identity = 13/27 (48.15%), Postives = 17/27 (62.96%), Query Frame = 2

Query:  482 GKQLEDGRTLAGFRRQDGVGVECVVML 562
            GKQLEDGRTL+ +  Q    +  V+ L
Sbjct:   47 GKQLEDGRTLSDYNIQKESTLHLVLRL 73

[Close]

BLAST of EY728653 vs. ExPASy Swiss-Prot
Match: UBIQ_EUPEU (Ubiquitin OS=Euplotes eurystomus PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.137e-17
Identity = 39/50 (78.00%), Postives = 46/50 (92.00%), Query Frame = 1

Query:  343 MQIFVKTLTGKTITLEVESSDTIDNVKATMQDEEGIPPDEQRLMFAGETI 492
            MQIFVKTLTGKTITL+VE SDTIDNVK  +QD+EGIPPD+QRL+FAG+ +
Sbjct:    1 MQIFVKTLTGKTITLDVEQSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQL 50

HSP 2 Score: 27.7202 bits (60), Expect = 1.137e-17
Identity = 14/27 (51.85%), Postives = 17/27 (62.96%), Query Frame = 2

Query:  482 GKQLEDGRTLAGFRRQDGVGVECVVML 562
            GKQLEDGRTLA +  Q    +  V+ L
Sbjct:   47 GKQLEDGRTLADYNIQKESTLHLVLRL 73

[Close]

BLAST of EY728653 vs. ExPASy Swiss-Prot
Match: UBIQ_XENLA (Ubiquitin OS=Xenopus laevis PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.479e-17
Identity = 40/50 (80.00%), Postives = 47/50 (94.00%), Query Frame = 1

Query:  343 MQIFVKTLTGKTITLEVESSDTIDNVKATMQDEEGIPPDEQRLMFAGETI 492
            MQIFVKTLTGKTITLEVE SDTI+NVKA +QD+EGIPPD+QRL+FAG+ +
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 2 Score: 26.5646 bits (57), Expect = 1.479e-17
Identity = 13/27 (48.15%), Postives = 17/27 (62.96%), Query Frame = 2

Query:  482 GKQLEDGRTLAGFRRQDGVGVECVVML 562
            GKQLEDGRTL+ +  Q    +  V+ L
Sbjct:   47 GKQLEDGRTLSDYNIQKESTLHLVLRL 73

[Close]

BLAST of EY728653 vs. ExPASy Swiss-Prot
Match: UBIQ_SPOFR (Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.479e-17
Identity = 40/50 (80.00%), Postives = 47/50 (94.00%), Query Frame = 1

Query:  343 MQIFVKTLTGKTITLEVESSDTIDNVKATMQDEEGIPPDEQRLMFAGETI 492
            MQIFVKTLTGKTITLEVE SDTI+NVKA +QD+EGIPPD+QRL+FAG+ +
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 2 Score: 26.5646 bits (57), Expect = 1.479e-17
Identity = 13/27 (48.15%), Postives = 17/27 (62.96%), Query Frame = 2

Query:  482 GKQLEDGRTLAGFRRQDGVGVECVVML 562
            GKQLEDGRTL+ +  Q    +  V+ L
Sbjct:   47 GKQLEDGRTLSDYNIQKESTLHLVLRL 73

[Close]

BLAST of EY728653 vs. ExPASy Swiss-Prot
Match: UBIQ_RAT (Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.479e-17
Identity = 40/50 (80.00%), Postives = 47/50 (94.00%), Query Frame = 1

Query:  343 MQIFVKTLTGKTITLEVESSDTIDNVKATMQDEEGIPPDEQRLMFAGETI 492
            MQIFVKTLTGKTITLEVE SDTI+NVKA +QD+EGIPPD+QRL+FAG+ +
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 2 Score: 26.5646 bits (57), Expect = 1.479e-17
Identity = 13/27 (48.15%), Postives = 17/27 (62.96%), Query Frame = 2

Query:  482 GKQLEDGRTLAGFRRQDGVGVECVVML 562
            GKQLEDGRTL+ +  Q    +  V+ L
Sbjct:   47 GKQLEDGRTLSDYNIQKESTLHLVLRL 73

The following BLAST results are available for this feature:

BLAST of EY728653 vs. ExPASy Swiss-Prot

BLAST of EY728653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75


Match Name	E-value	Identity	Description
UBIQ_ACECL	5.168e-18	78.00	Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1	[more]
UBIQ_TRYCR	6.722e-18	80.00	Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1	[more]
UBIQ_ACACA	6.722e-18	80.00	Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1	[more]
UBIQ_GEOCY	8.743e-18	80.00	Ubiquitin OS=Geodia cydonium PE=3 SV=1	[more]
UBIQ_CAEEL	8.743e-18	80.00	Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 ...	[more]
UBIQ_AGLNE	1.137e-17	80.00	Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1	[more]
UBIQ_EUPEU	1.137e-17	78.00	Ubiquitin OS=Euplotes eurystomus PE=3 SV=1	[more]
UBIQ_XENLA	1.479e-17	80.00	Ubiquitin OS=Xenopus laevis PE=1 SV=1	[more]
UBIQ_SPOFR	1.479e-17	80.00	Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1	[more]
UBIQ_RAT	1.479e-17	80.00	Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-704-006-G02-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY728653 ID=EY728653; Name=EY728653; organism=Citrus sinensis; type=EST; length=908bp
CACGCGTCCGGGAGGAGCAGGAGGCCCAGCCGGACGGTTAATTATCGTCG
ATAAAATGAAAGCCTTTATAAATAACTAAGCCGAAGGAGGAGGAGGGGGA
GGAACAAAGACTTAGAAAAAGGAGAAGATCGTAATTTTACTCTACCCAGA
GTTGAAAATCTTGAAACTCGGCGGCGATTTTGAGTTAAAGAAGAGGCAGG
TTCCAGGGAAAAGATTTGGCTCTGGAGGTGGCACGGCATAGCCTTTTTAA
ATAAAGACACTGAGTTTCTTTCTTTTTCTGTCTTCAAAGCTTCACCTTTT
TTTCTCAAAGAAGAAGAGTGGGGGAAAAGAAATCAAAGCAGTATGCAGAT
CTTTGTGAAGACTTTGACTGGGAAGACAATTACTCTTGAGGTTGAGAGCA
GTGACACCATCGATAATGTTAAGGCTACGATGCAGGACGAGGAAGGGATT
CCTCCGGATGAGCAGAGATTGATGTTTGCTGGGGAAACAATTGGAAGATG
GCCGTACTCTGGCTGGATTTCGGCGTCAGGACGGTGTGGGGGTTGAGTGT
GTCGTGATGCTCTCGGGAGGAGCACTGATCAGGTGTGCGGGTGCCGGGGG
GTGAGCGCGCGGGCGAGGTTGTGAGGTGGGGAGGCGGTGCGGAGTGGGTT
GGCGGGTGGGGGTGGGGCTGAGTGGGGGTGGTGGTTCGGTTGGGGGGGGT
TGGTGTTTGTGCGGCAGGCAGGTGTGCGTTTTGTGTGACTGAGAAGGGTG
CCCTTTTCGCTGCGGGGTGGGGTGGCGGATGGGTTAGTGAGAGACTGAGG
TCTCAGTGTGGCGCGGTTTGCTGGCGCCGGTTGTGCTGGTGCTTCTGTGG
AGTTTGATAGCGCGTCGCGGCCGACGCGGACGTCTCTGTCTATGCCTCGC
GTGTATCT