EY728653 | Citrus Genome Database

Overview


Name	EY728653
Unique Name	EY728653
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	908

Libraries


Library Name	Type
Sweet orange fruit, development stadium (5 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of EY728653 vs. ExPASy Swiss-Prot
Match: UBIQ_HUMAN (Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.479e-17
Identity = 40/50 (80.00%), Postives = 47/50 (94.00%), Query Frame = 1

Query:  343 MQIFVKTLTGKTITLEVESSDTIDNVKATMQDEEGIPPDEQRLMFAGETI 492
            MQIFVKTLTGKTITLEVE SDTI+NVKA +QD+EGIPPD+QRL+FAG+ +
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 2 Score: 26.5646 bits (57), Expect = 1.479e-17
Identity = 13/27 (48.15%), Postives = 17/27 (62.96%), Query Frame = 2

Query:  482 GKQLEDGRTLAGFRRQDGVGVECVVML 562
            GKQLEDGRTL+ +  Q    +  V+ L
Sbjct:   47 GKQLEDGRTLSDYNIQKESTLHLVLRL 73

BLAST of EY728653 vs. ExPASy Swiss-Prot
Match: UBIQ_HORSE (Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 1.479e-17
Identity = 40/50 (80.00%), Postives = 47/50 (94.00%), Query Frame = 1

Query:  343 MQIFVKTLTGKTITLEVESSDTIDNVKATMQDEEGIPPDEQRLMFAGETI 492
            MQIFVKTLTGKTITLEVE SDTI+NVKA +QD+EGIPPD+QRL+FAG+ +
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 2 Score: 26.5646 bits (57), Expect = 1.479e-17
Identity = 13/27 (48.15%), Postives = 17/27 (62.96%), Query Frame = 2

Query:  482 GKQLEDGRTLAGFRRQDGVGVECVVML 562
            GKQLEDGRTL+ +  Q    +  V+ L
Sbjct:   47 GKQLEDGRTLSDYNIQKESTLHLVLRL 73

BLAST of EY728653 vs. ExPASy Swiss-Prot
Match: UBIQ_GORGO (Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 1.479e-17
Identity = 40/50 (80.00%), Postives = 47/50 (94.00%), Query Frame = 1

Query:  343 MQIFVKTLTGKTITLEVESSDTIDNVKATMQDEEGIPPDEQRLMFAGETI 492
            MQIFVKTLTGKTITLEVE SDTI+NVKA +QD+EGIPPD+QRL+FAG+ +
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 2 Score: 26.5646 bits (57), Expect = 1.479e-17
Identity = 13/27 (48.15%), Postives = 17/27 (62.96%), Query Frame = 2

Query:  482 GKQLEDGRTLAGFRRQDGVGVECVVML 562
            GKQLEDGRTL+ +  Q    +  V+ L
Sbjct:   47 GKQLEDGRTLSDYNIQKESTLHLVLRL 73

BLAST of EY728653 vs. ExPASy Swiss-Prot
Match: UBIQ_FELCA (Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.479e-17
Identity = 40/50 (80.00%), Postives = 47/50 (94.00%), Query Frame = 1

Query:  343 MQIFVKTLTGKTITLEVESSDTIDNVKATMQDEEGIPPDEQRLMFAGETI 492
            MQIFVKTLTGKTITLEVE SDTI+NVKA +QD+EGIPPD+QRL+FAG+ +
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 2 Score: 26.5646 bits (57), Expect = 1.479e-17
Identity = 13/27 (48.15%), Postives = 17/27 (62.96%), Query Frame = 2

Query:  482 GKQLEDGRTLAGFRRQDGVGVECVVML 562
            GKQLEDGRTL+ +  Q    +  V+ L
Sbjct:   47 GKQLEDGRTLSDYNIQKESTLHLVLRL 73

BLAST of EY728653 vs. ExPASy Swiss-Prot
Match: UBIQ_DROME (Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.479e-17
Identity = 40/50 (80.00%), Postives = 47/50 (94.00%), Query Frame = 1

Query:  343 MQIFVKTLTGKTITLEVESSDTIDNVKATMQDEEGIPPDEQRLMFAGETI 492
            MQIFVKTLTGKTITLEVE SDTI+NVKA +QD+EGIPPD+QRL+FAG+ +
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 2 Score: 26.5646 bits (57), Expect = 1.479e-17
Identity = 13/27 (48.15%), Postives = 17/27 (62.96%), Query Frame = 2

Query:  482 GKQLEDGRTLAGFRRQDGVGVECVVML 562
            GKQLEDGRTL+ +  Q    +  V+ L
Sbjct:   47 GKQLEDGRTLSDYNIQKESTLHLVLRL 73

BLAST of EY728653 vs. ExPASy Swiss-Prot
Match: UBIQ_CRIGR (Ubiquitin OS=Cricetulus griseus PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.479e-17
Identity = 40/50 (80.00%), Postives = 47/50 (94.00%), Query Frame = 1

Query:  343 MQIFVKTLTGKTITLEVESSDTIDNVKATMQDEEGIPPDEQRLMFAGETI 492
            MQIFVKTLTGKTITLEVE SDTI+NVKA +QD+EGIPPD+QRL+FAG+ +
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 2 Score: 26.5646 bits (57), Expect = 1.479e-17
Identity = 13/27 (48.15%), Postives = 17/27 (62.96%), Query Frame = 2

Query:  482 GKQLEDGRTLAGFRRQDGVGVECVVML 562
            GKQLEDGRTL+ +  Q    +  V+ L
Sbjct:   47 GKQLEDGRTLSDYNIQKESTLHLVLRL 73

BLAST of EY728653 vs. ExPASy Swiss-Prot
Match: UBIQ_CHICK (Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.479e-17
Identity = 40/50 (80.00%), Postives = 47/50 (94.00%), Query Frame = 1

Query:  343 MQIFVKTLTGKTITLEVESSDTIDNVKATMQDEEGIPPDEQRLMFAGETI 492
            MQIFVKTLTGKTITLEVE SDTI+NVKA +QD+EGIPPD+QRL+FAG+ +
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 2 Score: 26.5646 bits (57), Expect = 1.479e-17
Identity = 13/27 (48.15%), Postives = 17/27 (62.96%), Query Frame = 2

Query:  482 GKQLEDGRTLAGFRRQDGVGVECVVML 562
            GKQLEDGRTL+ +  Q    +  V+ L
Sbjct:   47 GKQLEDGRTLSDYNIQKESTLHLVLRL 73

BLAST of EY728653 vs. ExPASy Swiss-Prot
Match: UBIQ_CERCA (Ubiquitin OS=Ceratitis capitata PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.479e-17
Identity = 40/50 (80.00%), Postives = 47/50 (94.00%), Query Frame = 1

Query:  343 MQIFVKTLTGKTITLEVESSDTIDNVKATMQDEEGIPPDEQRLMFAGETI 492
            MQIFVKTLTGKTITLEVE SDTI+NVKA +QD+EGIPPD+QRL+FAG+ +
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 2 Score: 26.5646 bits (57), Expect = 1.479e-17
Identity = 13/27 (48.15%), Postives = 17/27 (62.96%), Query Frame = 2

Query:  482 GKQLEDGRTLAGFRRQDGVGVECVVML 562
            GKQLEDGRTL+ +  Q    +  V+ L
Sbjct:   47 GKQLEDGRTLSDYNIQKESTLHLVLRL 73

BLAST of EY728653 vs. ExPASy Swiss-Prot
Match: UBIQ_CAVPO (Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.479e-17
Identity = 40/50 (80.00%), Postives = 47/50 (94.00%), Query Frame = 1

Query:  343 MQIFVKTLTGKTITLEVESSDTIDNVKATMQDEEGIPPDEQRLMFAGETI 492
            MQIFVKTLTGKTITLEVE SDTI+NVKA +QD+EGIPPD+QRL+FAG+ +
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 2 Score: 26.5646 bits (57), Expect = 1.479e-17
Identity = 13/27 (48.15%), Postives = 17/27 (62.96%), Query Frame = 2

Query:  482 GKQLEDGRTLAGFRRQDGVGVECVVML 562
            GKQLEDGRTL+ +  Q    +  V+ L
Sbjct:   47 GKQLEDGRTLSDYNIQKESTLHLVLRL 73

BLAST of EY728653 vs. ExPASy Swiss-Prot
Match: UBIQ_CANFA (Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.479e-17
Identity = 40/50 (80.00%), Postives = 47/50 (94.00%), Query Frame = 1

Query:  343 MQIFVKTLTGKTITLEVESSDTIDNVKATMQDEEGIPPDEQRLMFAGETI 492
            MQIFVKTLTGKTITLEVE SDTI+NVKA +QD+EGIPPD+QRL+FAG+ +
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 2 Score: 26.5646 bits (57), Expect = 1.479e-17
Identity = 13/27 (48.15%), Postives = 17/27 (62.96%), Query Frame = 2

Query:  482 GKQLEDGRTLAGFRRQDGVGVECVVML 562
            GKQLEDGRTL+ +  Q    +  V+ L
Sbjct:   47 GKQLEDGRTLSDYNIQKESTLHLVLRL 73

The following BLAST results are available for this feature:

BLAST of EY728653 vs. ExPASy Swiss-Prot

BLAST of EY728653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75


Match Name	E-value	Identity	Description
UBIQ_HUMAN	1.479e-17	80.00	Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1	[more]
UBIQ_HORSE	1.479e-17	80.00	Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2	[more]
UBIQ_GORGO	1.479e-17	80.00	Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 S...	[more]
UBIQ_FELCA	1.479e-17	80.00	Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1	[more]
UBIQ_DROME	1.479e-17	80.00	Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1...	[more]
UBIQ_CRIGR	1.479e-17	80.00	Ubiquitin OS=Cricetulus griseus PE=3 SV=1	[more]
UBIQ_CHICK	1.479e-17	80.00	Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1	[more]
UBIQ_CERCA	1.479e-17	80.00	Ubiquitin OS=Ceratitis capitata PE=1 SV=1	[more]
UBIQ_CAVPO	1.479e-17	80.00	Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1	[more]
UBIQ_CANFA	1.479e-17	80.00	Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-704-006-G02-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY728653 ID=EY728653; Name=EY728653; organism=Citrus sinensis; type=EST; length=908bp
CACGCGTCCGGGAGGAGCAGGAGGCCCAGCCGGACGGTTAATTATCGTCG
ATAAAATGAAAGCCTTTATAAATAACTAAGCCGAAGGAGGAGGAGGGGGA
GGAACAAAGACTTAGAAAAAGGAGAAGATCGTAATTTTACTCTACCCAGA
GTTGAAAATCTTGAAACTCGGCGGCGATTTTGAGTTAAAGAAGAGGCAGG
TTCCAGGGAAAAGATTTGGCTCTGGAGGTGGCACGGCATAGCCTTTTTAA
ATAAAGACACTGAGTTTCTTTCTTTTTCTGTCTTCAAAGCTTCACCTTTT
TTTCTCAAAGAAGAAGAGTGGGGGAAAAGAAATCAAAGCAGTATGCAGAT
CTTTGTGAAGACTTTGACTGGGAAGACAATTACTCTTGAGGTTGAGAGCA
GTGACACCATCGATAATGTTAAGGCTACGATGCAGGACGAGGAAGGGATT
CCTCCGGATGAGCAGAGATTGATGTTTGCTGGGGAAACAATTGGAAGATG
GCCGTACTCTGGCTGGATTTCGGCGTCAGGACGGTGTGGGGGTTGAGTGT
GTCGTGATGCTCTCGGGAGGAGCACTGATCAGGTGTGCGGGTGCCGGGGG
GTGAGCGCGCGGGCGAGGTTGTGAGGTGGGGAGGCGGTGCGGAGTGGGTT
GGCGGGTGGGGGTGGGGCTGAGTGGGGGTGGTGGTTCGGTTGGGGGGGGT
TGGTGTTTGTGCGGCAGGCAGGTGTGCGTTTTGTGTGACTGAGAAGGGTG
CCCTTTTCGCTGCGGGGTGGGGTGGCGGATGGGTTAGTGAGAGACTGAGG
TCTCAGTGTGGCGCGGTTTGCTGGCGCCGGTTGTGCTGGTGCTTCTGTGG
AGTTTGATAGCGCGTCGCGGCCGACGCGGACGTCTCTGTCTATGCCTCGC
GTGTATCT