EY728653

Overview
NameEY728653
Unique NameEY728653
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length908
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY728653_ssr85 microsatellite EY728653_ssr85:85..96. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY728653 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.573e-16
Identity = 39/50 (78.00%), Postives = 46/50 (92.00%), Query Frame = 1
Query:  343 MQIFVKTLTGKTITLEVESSDTIDNVKATMQDEEGIPPDEQRLMFAGETI 492
            MQIFVKTLTGKTI LEVE SDTI+NVKA +QD+EGIPPD+QRL+FAG+ +
Sbjct:    1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50          

HSP 2 Score: 25.0238 bits (53), Expect = 1.573e-16
Identity = 12/27 (44.44%), Postives = 17/27 (62.96%), Query Frame = 2
Query:  482 GKQLEDGRTLAGFRRQDGVGVECVVML 562
            GKQLE+GRTL+ +  Q    +  V+ L
Sbjct:   47 GKQLEEGRTLSDYNIQKESTLHLVLRL 73          
BLAST of EY728653 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.302e-14
Identity = 37/50 (74.00%), Postives = 44/50 (88.00%), Query Frame = 1
Query:  343 MQIFVKTLTGKTITLEVESSDTIDNVKATMQDEEGIPPDEQRLMFAGETI 492
            MQIFVKTLTG TI LEVE SDTI+NVKA +QD+EGIPPD+QRL+FA + +
Sbjct:    1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQL 50          

HSP 2 Score: 22.7126 bits (47), Expect = 2.302e-14
Identity = 11/26 (42.31%), Postives = 16/26 (61.54%), Query Frame = 2
Query:  485 KQLEDGRTLAGFRRQDGVGVECVVML 562
            KQLE+GRTL+ +  Q    +  V+ L
Sbjct:   48 KQLEEGRTLSDYNIQKESTLHLVLRL 73          
BLAST of EY728653 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 1.236e-11
Identity = 30/50 (60.00%), Postives = 40/50 (80.00%), Query Frame = 1
Query:  343 MQIFVKTLTGKTITLEVESSDTIDNVKATMQDEEGIPPDEQRLMFAGETI 492
            MQIFVKTLTGKTIT+E E  DT+  VK  + D+EG+P D+QRL++AG+ +
Sbjct:    1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQL 50          

HSP 2 Score: 23.8682 bits (50), Expect = 1.236e-11
Identity = 12/27 (44.44%), Postives = 16/27 (59.26%), Query Frame = 2
Query:  482 GKQLEDGRTLAGFRRQDGVGVECVVML 562
            GKQLED +TLA +  Q    +  V+ L
Sbjct:   47 GKQLEDAQTLADYNIQKESTLHMVLRL 73          
BLAST of EY728653 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 63.5438 bits (153), Expect = 2.085e-11
Identity = 29/39 (74.36%), Postives = 36/39 (92.31%), Query Frame = 1
Query:  376 TITLEVESSDTIDNVKATMQDEEGIPPDEQRLMFAGETI 492
            TITLEVE SDTI+NVKA +QD+EGIPPD+QRL+FAG+ +
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 39          

HSP 2 Score: 26.5646 bits (57), Expect = 2.085e-11
Identity = 13/27 (48.15%), Postives = 17/27 (62.96%), Query Frame = 2
Query:  482 GKQLEDGRTLAGFRRQDGVGVECVVML 562
            GKQLEDGRTL+ +  Q    +  V+ L
Sbjct:   36 GKQLEDGRTLSDYNIQKESTLHLVLRL 62          
BLAST of EY728653 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 64.6994 bits (156), Expect = 7.707e-11
Identity = 28/50 (56.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query:  343 MQIFVKTLTGKTITLEVESSDTIDNVKATMQDEEGIPPDEQRLMFAGETI 492
            MQIF+KTLTGKTIT E E ++T+ ++K  + D+EG+P D+QRL+FAG+ +
Sbjct:    1 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQL 50          

HSP 2 Score: 23.483 bits (49), Expect = 7.707e-11
Identity = 11/27 (40.74%), Postives = 16/27 (59.26%), Query Frame = 2
Query:  482 GKQLEDGRTLAGFRRQDGVGVECVVML 562
            GKQLED +T+A +  Q    +  V+ L
Sbjct:   47 GKQLEDSKTMADYNIQKESTLHMVLRL 73          
The following BLAST results are available for this feature:
BLAST of EY728653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
UBIQ_LEIMA1.573e-1678.00Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1[more]
UBIQ_LEITA2.302e-1474.00Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3... [more]
UBIL_NPVOP1.236e-1160.00Ubiquitin-like protein OS=Orgyia pseudotsugata mul... [more]
UBIQ_LUMTE2.085e-1174.36Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ... [more]
UBIL_NPVAC7.707e-1156.00Ubiquitin-like protein OS=Autographa californica n... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-006-G02-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728653 ID=EY728653; Name=EY728653; organism=Citrus sinensis; type=EST; length=908bp
CACGCGTCCGGGAGGAGCAGGAGGCCCAGCCGGACGGTTAATTATCGTCG
ATAAAATGAAAGCCTTTATAAATAACTAAGCCGAAGGAGGAGGAGGGGGA
GGAACAAAGACTTAGAAAAAGGAGAAGATCGTAATTTTACTCTACCCAGA
GTTGAAAATCTTGAAACTCGGCGGCGATTTTGAGTTAAAGAAGAGGCAGG
TTCCAGGGAAAAGATTTGGCTCTGGAGGTGGCACGGCATAGCCTTTTTAA
ATAAAGACACTGAGTTTCTTTCTTTTTCTGTCTTCAAAGCTTCACCTTTT
TTTCTCAAAGAAGAAGAGTGGGGGAAAAGAAATCAAAGCAGTATGCAGAT
CTTTGTGAAGACTTTGACTGGGAAGACAATTACTCTTGAGGTTGAGAGCA
GTGACACCATCGATAATGTTAAGGCTACGATGCAGGACGAGGAAGGGATT
CCTCCGGATGAGCAGAGATTGATGTTTGCTGGGGAAACAATTGGAAGATG
GCCGTACTCTGGCTGGATTTCGGCGTCAGGACGGTGTGGGGGTTGAGTGT
GTCGTGATGCTCTCGGGAGGAGCACTGATCAGGTGTGCGGGTGCCGGGGG
GTGAGCGCGCGGGCGAGGTTGTGAGGTGGGGAGGCGGTGCGGAGTGGGTT
GGCGGGTGGGGGTGGGGCTGAGTGGGGGTGGTGGTTCGGTTGGGGGGGGT
TGGTGTTTGTGCGGCAGGCAGGTGTGCGTTTTGTGTGACTGAGAAGGGTG
CCCTTTTCGCTGCGGGGTGGGGTGGCGGATGGGTTAGTGAGAGACTGAGG
TCTCAGTGTGGCGCGGTTTGCTGGCGCCGGTTGTGCTGGTGCTTCTGTGG
AGTTTGATAGCGCGTCGCGGCCGACGCGGACGTCTCTGTCTATGCCTCGC
GTGTATCT
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