EY728644

Overview
NameEY728644
Unique NameEY728644
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12709 contig Csv1_Contig12709:1451..2336. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY728644 vs. ExPASy Swiss-Prot
Match: LOX2_ORYSJ (Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=LOX1.1 PE=2 SV=2)

HSP 1 Score: 283.108 bits (723), Expect = 1.435e-75
Identity = 136/292 (46.58%), Postives = 193/292 (66.10%), Query Frame = 3
Query:   12 LDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGK---PQWKQVFLPSWH------STECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVXHYYPDKSLVESDEELQAWWTEIRTVGHXGQEHEPWWPVLKTP*DLIEIITTIV-LGTSGH 857
            +D+HD F+PY+  +  L    +Y +RT+ FL   GTL P+AIEL+ P +           V+ P+        + E W+W+LAKA+V  +D  +HQL+SHWL TH   EP+VIATNRQLSV HP+++LL PH+R TM IN LARQ L+N  GI E +  P K+++  SS  Y K W F  +ALP DL+ RG+AV DP++P+ ++L IEDYP+ANDGL +W AI+QW T+Y+  YYP+  +++ D ELQAWW E+R VGH   +   WWP +KT  +L++   TI+ +G++ H
Sbjct:  426 VDHHDHFMPYLLDINSLDDNFIYATRTLLFLRGDGTLAPLAIELSLPHLQDDGLITARSTVYTPAARGGTGAGAVEWWVWQLAKAYVNVNDYCWHQLISHWLNTHAVMEPFVIATNRQLSVAHPVHKLLLPHYRDTMTINALARQTLINGGGIFEMTVFPRKHALAMSSAFY-KDWSFADQALPDDLVKRGVAVPDPASPYKVRLLIEDYPYANDGLAVWHAIEQWATEYLAIYYPNDGVLQGDAELQAWWKEVREVGHGDIKDATWWPEMKTVAELVKACATIIWIGSALH 716          
BLAST of EY728644 vs. ExPASy Swiss-Prot
Match: LOXE3_HUMAN (Epidermis-type lipoxygenase 3 OS=Homo sapiens GN=ALOXE3 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.515e-35
Identity = 86/261 (32.95%), Postives = 140/261 (53.64%), Query Frame = 3
Query:   93 IFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVXHYYPDKSLVESDEELQAWWTEIRTVGHXGQEHEPWWPVLKTP*DLIEIITTIVLGTSGHTQLLTS 875
            + +L+P G L P+AI+L++ P    P    +FLP+      W W LAK  V   +   H+  +H+L TH   E + +AT RQL + HPIY+LL PH RYT+++N +AR  L+N +G+++   S G+  + +        + + +  LP  L +RG+            L I +Y + +DGL +W AI+ +V++ V +YYP  + V+ D ELQAW  EI      G+E   +   L TP ++++ +T I+   S     + S
Sbjct:  352 LLWLSPQGALVPLAIQLSQTPGPDSP----IFLPTDSE---WDWLLAKTWVRNSEFLVHENNTHFLCTHLLCEAFAMATLRQLPLCHPIYKLLLPHTRYTLQVNTIARATLLNPEGLVDQVTSIGRQGLIYLMSTGLAHFTYTNFCLPDSLRARGV------------LAIPNYHYRDDGLKIWAAIESFVSEIVGYYYPSDASVQQDSELQAWTGEIFAQAFLGRESSGFPSRLCTPGEMVKFLTAIIFNCSAQHAAVNS 593          
BLAST of EY728644 vs. ExPASy Swiss-Prot
Match: LOXE3_MOUSE (Epidermis-type lipoxygenase 3 OS=Mus musculus GN=Aloxe3 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 9.407e-35
Identity = 88/254 (34.65%), Postives = 140/254 (55.12%), Query Frame = 3
Query:   93 IFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWL-WKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVXHYYPDKSLVESDEELQAWWTEIRTVGHXGQEHEPWWPVLKTP*DLIEIITTIVLGTS 851
            + +L P G L P+AI+L++ P    P    +FLP    T+C L W LAK  V   +   H+  +H+L TH   E + +AT RQL + HP+Y+LL PH RYT+++N +AR  L+N DG+++   S G+  + +        + +    LP  + +RG+            LTI +Y + +DGL +W AI+++V++ V +YYP  + V+ D ELQAW  EI      G+E   +   L TP +L++ +T I+   S
Sbjct:  352 LLWLNPQGVLLPLAIQLSQTPGPESP----IFLP----TDCELDWLLAKTWVRNSEFLVHENNTHFLCTHLLCEAFSMATLRQLPLCHPVYKLLLPHTRYTLQVNTIARATLLNPDGLVDKVTSIGRQGLIYLMSTGLAHFTYTDFCLPDSIRARGV------------LTIPNYHYRDDGLKIWAAIERFVSEIVSYYYPSDASVQQDCELQAWVGEIFAQAFLGRESSGFPSRLCTPGELVKYLTAIIFNCS 585          
BLAST of EY728644 vs. ExPASy Swiss-Prot
Match: LX15B_MOUSE (Arachidonate 15-lipoxygenase B OS=Mus musculus GN=Alox15b PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.346e-32
Identity = 90/255 (35.29%), Postives = 131/255 (51.37%), Query Frame = 3
Query:  111 AGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVXHYYPDKSLVESDEELQAWWTEIRTVGHXGQEHEPWWPVLKTP*DLIEIITTIVLGTSGHTQLLTS 875
            +G L PIAI+L + P    P    +FLPS    + W W LAK  V   +   H+ V+H L  H   E + +AT RQL   HP+++LL PH RYT+ IN LAR+ LV    +I+ S   G            +Q  +    LP+D+ +RG  VED          I  Y + +DG+ +W AIK +V++ V  YYP  + V+ D+ELQAW  EI + G  G+E      +L T   L++ IT ++   S     ++S
Sbjct:  324 SGPLLPIAIQLKQTPGPDNP----IFLPS---DDTWDWLLAKTWVRNSEFYIHEAVTHLLHAHLIPEVFALATLRQLPRCHPLFKLLIPHIRYTLHINTLARELLVAPGKLIDKSTGLGTGGFSDLIKRNMEQLNYSVLCLPEDIRARG--VED----------IPGYYYRDDGMQIWGAIKSFVSEIVSIYYPSDTSVQDDQELQAWVREIFSEGFLGRESSGMPSLLDTREALVQYITMVIFTCSAKHAAVSS 559          
BLAST of EY728644 vs. ExPASy Swiss-Prot
Match: LX15B_HUMAN (Arachidonate 15-lipoxygenase B OS=Homo sapiens GN=ALOX15B PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.406e-30
Identity = 83/255 (32.55%), Postives = 133/255 (52.16%), Query Frame = 3
Query:   90 TIFFLTPA-GTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVXHYYPDKSLVESDEELQAWWTEIRTVGHXGQEHEPWWPVLKTP*DLIEIITTIVLGTS 851
            T+ + +P  G L P+AI+L++ P    P    +FLP+    + W W LAK  V   +  +H+ ++H L +H   E + +AT RQL   HP+++LL PH RYT+ IN LAR+ L+    +++ S   G            KQ  +    LP+D+ +RG  VED          I  Y + +DG+ +W A++++V++ +  YYP    V+ D ELQAW  EI + G   QE       L+T   L++ +T ++   S
Sbjct:  315 TLLYQSPGCGPLLPLAIQLSQTPGPNSP----IFLPT---DDKWDWLLAKTWVRNAEFSFHEALTHLLHSHLLPEVFTLATLRQLPHCHPLFKLLIPHTRYTLHINTLARELLIVPGQVVDRSTGIGIEGFSELIQRNMKQLNYSLLCLPEDIRTRG--VED----------IPGYYYRDDGMQIWGAVERFVSEIIGIYYPSDESVQDDRELQAWVREIFSKGFLNQESSGIPSSLETREALVQYVTMVIFTCS 550          
BLAST of EY728644 vs. ExPASy Swiss-Prot
Match: LX12B_HUMAN (Arachidonate 12-lipoxygenase, 12R type OS=Homo sapiens GN=ALOX12B PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.406e-30
Identity = 81/244 (33.20%), Postives = 125/244 (51.23%), Query Frame = 3
Query:  108 PAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVXHYYPDKSLVESDEELQAWWTEIRTVGHXGQEHEPWWPVLKTP*DLIEIITTIV 839
            P G + PIAI+L++ P    P    +FLPS      W W LAK  V   +   H+ ++H L TH   E + +A  R L + HP+Y+LL PH RYT++IN + R  L+N  G+     S G        V    +  +D   LP D + RG  V+D          +  Y + +D L +W+A++++VT+ + +YYP  + VE D ELQ+W  EI      G+E   +   L+T  +LI  +T ++
Sbjct:  347 PEGKMMPIAIQLSQTPGPDCP----IFLPSDSE---WDWLLAKTWVRYAEFYSHEAIAHLLETHLIAEAFCLALLRNLPMCHPLYKLLIPHTRYTVQINSIGRAVLLNEGGLSAKGMSLGVEGFAGVMVRALSELTYDSLYLPNDFVERG--VQD----------LPGYYYRDDSLAVWNALEKYVTEIITYYYPSDAAVEGDPELQSWVQEIFKECLLGRESSGFPRCLRTVPELIRYVTIVI 571          
BLAST of EY728644 vs. ExPASy Swiss-Prot
Match: LX15B_RAT (Arachidonate 15-lipoxygenase B OS=Rattus norvegicus GN=Alox15b PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.462e-29
Identity = 81/255 (31.76%), Postives = 128/255 (50.20%), Query Frame = 3
Query:   90 TIFFLTP-AGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVXHYYPDKSLVESDEELQAWWTEIRTVGHXGQEHEPWWPVLKTP*DLIEIITTIVLGTS 851
            T+ + +P +G L PIAI+L + P    P    +FLPS    + W W LAK  V   +   H+ ++H L  H   E + +AT RQL   HP+++LL PH RYT+ IN LAR+ L+    +++ S   G            +Q  +    LP+D+ +R +              +  Y + +DG+ +W AI+ +V++ V  YYP  + V  D+ELQAW  EI + G   QE      +L T   L++ +T ++   S
Sbjct:  316 TLLYQSPGSGPLLPIAIQLKQTPGPDNP----IFLPS---DDKWDWLLAKTWVRNAEFSIHEALTHLLHAHLIPEVFALATLRQLPHCHPLFKLLIPHTRYTLHINTLARELLIAPGKVVDKSTGLGIGGFSDLIKRNMEQLSYSVLCLPEDIRARDVG------------DLPGYYYRDDGMQIWSAIRSFVSEIVDIYYPSDASVRDDQELQAWVGEIFSEGFLSQESSGMPSLLDTQEALVQYVTMVIFTCS 551          
BLAST of EY728644 vs. ExPASy Swiss-Prot
Match: LX12B_MOUSE (Arachidonate 12-lipoxygenase, 12R type OS=Mus musculus GN=Alox12b PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.931e-28
Identity = 81/256 (31.64%), Postives = 127/256 (49.61%), Query Frame = 3
Query:  108 PAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVXHYYPDKSLVESDEELQAWWTEIRTVGHXGQEHEPWWPVLKTP*DLIEIITTIVLGTSGHTQLLTS 875
            P G + PIAI+L++ P    P    +FLP+      W W LAK  V   +   H+ V+H L +H   E + +A  R L + HP+Y+LL PH RY ++IN + R  L+N  G+   + S G        V    +  +    +P D + RG  V+D          +  Y F +D L +W A++++VT+ + +YYP+ + VE D ELQ W  EI      G+E   +   L+T  +LIE +T ++   S     + S
Sbjct:  347 PDGNMMPIAIQLSQTPGPDCP----IFLPNDSE---WDWLLAKTWVRYAEFYSHEAVAHLLESHLIGEAFCLALLRNLPMCHPLYKLLIPHTRYNVQINSIGRALLLNKGGLSARAMSLGLEGFAQVMVRGLSELTYKSLCIPNDFVERG--VQD----------LPGYYFRDDSLAVWYAMERYVTEIITYYYPNDAAVEGDPELQCWVQEIFKECLLGRESSGFPTCLRTIPELIEYVTMVMYTCSARHAAVNS 583          
BLAST of EY728644 vs. ExPASy Swiss-Prot
Match: LX12B_RAT (Arachidonate 12-lipoxygenase, 12R type OS=Rattus norvegicus GN=Alox12b PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.481e-27
Identity = 78/244 (31.97%), Postives = 123/244 (50.41%), Query Frame = 3
Query:  108 PAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVXHYYPDKSLVESDEELQAWWTEIRTVGHXGQEHEPWWPVLKTP*DLIEIITTIV 839
            P G + PIAI+L++ P    P    +FLP+      W W LAK  V   +   H+ V+H L +H   E + +A  R L + HP+Y+LL PH RY ++IN + R  L+N  G+   + S G        V    +  +    +P D + RG  V+D          +  Y F +D L +W A++++VT+ + +YYP+ + VE D ELQ W  EI       +E   +   L+T  +LIE +T ++
Sbjct:  347 PDGNMMPIAIQLSQTPGPDCP----IFLPNDSE---WDWLLAKTWVRYAEFYSHEAVAHLLESHLIGEAFCLALLRNLPMCHPLYKLLIPHTRYNVQINSIGRALLLNKGGLSARAMSLGLEGFAQVMVRGLSELTYKSLCIPNDFVERG--VQD----------LPGYYFRDDSLAVWYAMERYVTEIITYYYPNDAAVEGDPELQCWVQEIFKECLLERESSGFPTCLRTVPELIEYVTMVM 571          
BLAST of EY728644 vs. ExPASy Swiss-Prot
Match: LX12E_MOUSE (Arachidonate 12-lipoxygenase, epidermal-type OS=Mus musculus GN=Alox12e PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.429e-27
Identity = 89/251 (35.46%), Postives = 120/251 (47.81%), Query Frame = 3
Query:  102 LTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVXHYYPDKSLVESDEELQAWWTEIRTVGHXGQEHEPWWPVLKTP*DLIEIITTIVLGTSG 854
            L P G L P+ I+L +PP +G P    +FLPS        W LAK  V + D   HQL SH LR H   E   +AT R L  +HPIY+LL PHFRYTMEIN LAR  LV+  GI +   S G                +     P DL  RGL         G+K ++    +A D L LW+ I ++V   V  +Y   + V+ D ELQ W  E+  VG  G +   +   L++  +L   +   +   +G
Sbjct:  305 LQPDGRLLPMVIQL-QPPRHGCPP-PLLFLPS---DPPMAWLLAKIWVRSSDFQLHQLQSHLLRGHLMAEVISVATMRSLPSLHPIYKLLAPHFRYTMEINTLARNNLVSEWGIFDLVVSTGSGGHVDILQRATSCLTYRSFCPPDDLADRGLV--------GVKSSL----YAQDALRLWEIISRYVERMVELFYRSDTDVKEDPELQVWCREVTEVGLLGAQDRGFPLSLESRAELCRFVAMCIFTCTG 538          
The following BLAST results are available for this feature:
BLAST of EY728644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
LOX2_ORYSJ1.435e-7546.58Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=... [more]
LOXE3_HUMAN5.515e-3532.95Epidermis-type lipoxygenase 3 OS=Homo sapiens GN=A... [more]
LOXE3_MOUSE9.407e-3534.65Epidermis-type lipoxygenase 3 OS=Mus musculus GN=A... [more]
LX15B_MOUSE3.346e-3235.29Arachidonate 15-lipoxygenase B OS=Mus musculus GN=... [more]
LX15B_HUMAN1.406e-3032.55Arachidonate 15-lipoxygenase B OS=Homo sapiens GN=... [more]
LX12B_HUMAN1.406e-3033.20Arachidonate 12-lipoxygenase, 12R type OS=Homo sap... [more]
LX15B_RAT3.462e-2931.76Arachidonate 15-lipoxygenase B OS=Rattus norvegicu... [more]
LX12B_MOUSE2.931e-2831.64Arachidonate 12-lipoxygenase, 12R type OS=Mus musc... [more]
LX12B_RAT2.481e-2731.97Arachidonate 12-lipoxygenase, 12R type OS=Rattus n... [more]
LX12E_MOUSE9.429e-2735.46Arachidonate 12-lipoxygenase, epidermal-type OS=Mu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-006-F03-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728644 ID=EY728644; Name=EY728644; organism=Citrus sinensis; type=EST; length=885bp
CACGCGTCCGCTTAGATTACCATGACCTATTTTTACCATATGTGGAAAAA
GTGAGACAACTCAAAAGCACAACGTTGTATGGATCTCGCACAATTTTCTT
CCTAACACCAGCCGGCACATTGAGACCAATAGCTATTGAGCTCACTCGGC
CTCCAATGAATGGCAAGCCACAATGGAAACAAGTGTTTTTACCTTCTTGG
CACTCTACTGAGTGCTGGCTTTGGAAGCTAGCCAAAGCTCATGTCCTTGC
TCATGATGCTGGCTATCACCAGCTTGTCAGCCATTGGTTAAGAACTCATT
GTTGCACAGAACCTTACGTAATAGCAACCAATCGGCAACTCAGCGTGATG
CATCCAATCTATAGATTGTTGGATCCTCATTTTCGATACACAATGGAGAT
CAATGGTTTGGCTCGACAAGCTCTTGTTAATGCTGATGGAATCATTGAAA
GCTCATTCTCACCTGGAAAGTACTCTATGGAATTCAGCTCTGTTGCCTAT
GACAAGCAATGGCGCTTTGACCATGAAGCACTCCCCAAAGACCTAATTAG
CCGGGGATTGGCTGTTGAAGATCCAAGTGCTCCACATGGCTTGAAGCTAA
CAATTGAAGACTATCCTTTTGCCAATGATGGCCTTGATCTCTGGGATGCC
ATAAAACAATGGGTTACCGATTATGTNNATCACTACTACCCTGATAAAAG
CCTTGTAGAATCTGATGAAGAGCTCCAAGCTTGGTGGACTGAAATTCGAA
CTGTGGGACACNGTGGACAAGAACATGAACCTTGGTGGCCTGTCTTGAAA
ACCCCCTAGGATTTAATTGAAATCATCACAACTATTGTTTTGGGTACATC
TGGTCACACGCAGCTGTTAACTTCGGCCAATACAT
back to top