EY728644

Overview
NameEY728644
Unique NameEY728644
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12709 contig Csv1_Contig12709:1451..2336. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY728644 vs. ExPASy Swiss-Prot
Match: LOX15_PONAB (Arachidonate 15-lipoxygenase OS=Pongo abelii GN=ALOX15 PE=2 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 2.839e-23
Identity = 80/251 (31.87%), Postives = 112/251 (44.62%), Query Frame = 3
Query:  102 LTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVXHYYPDKSLVESDEELQAWWTEIRTVGHXGQEHEPWWPVLKTP*DLIEIITTIVLGTSG 854
            L P G L P+ I+L  P     P    +FLP+        W LAK  V + D   H+L SH LR H   E  V+AT R L  +HPI++L+ PH RYT+EIN  AR  LV+  GI +   S G                +     P DL  RGL            L ++   +A D L LW+ I ++V   V  +Y     V+ D ELQ W  EI  +G  G +   +   L++   +   +T  +   +G
Sbjct:  305 LQPDGKLLPMVIQLQLPSTGSPPP--PLFLPT---DPPMAWLLAKCWVRSSDFQLHELQSHLLRGHLMAEVIVVATMRCLPSIHPIFKLIIPHLRYTLEINVRARTGLVSDMGIFDQIMSTGGGGHVQLLKQAGAFLTYSSFCPPDDLADRGL------------LGVKSSFYAQDALRLWEIIYRYVEGIVSLHYKTDVAVKDDPELQTWCREITEIGLQGAQDRGFPVSLQSRDQVCHFVTMCIFTCTG 538          
BLAST of EY728644 vs. ExPASy Swiss-Prot
Match: LOX15_HUMAN (Arachidonate 15-lipoxygenase OS=Homo sapiens GN=ALOX15 PE=1 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 4.842e-23
Identity = 80/251 (31.87%), Postives = 111/251 (44.22%), Query Frame = 3
Query:  102 LTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVXHYYPDKSLVESDEELQAWWTEIRTVGHXGQEHEPWWPVLKTP*DLIEIITTIVLGTSG 854
            L P G L P+ I+L  P     P    +FLP+        W LAK  V + D   H+L SH LR H   E  V+AT R L  +HPI++L+ PH RYT+EIN  AR  LV+  GI +   S G                +     P DL  RGL            L ++   +A D L LW+ I ++V   V  +Y     V+ D ELQ W  EI  +G  G +   +   L+    +   +T  +   +G
Sbjct:  305 LQPDGKLLPMVIQLQLPRTGSPPP--PLFLPT---DPPMAWLLAKCWVRSSDFQLHELQSHLLRGHLMAEVIVVATMRCLPSIHPIFKLIIPHLRYTLEINVRARTGLVSDMGIFDQIMSTGGGGHVQLLKQAGAFLTYSSFCPPDDLADRGL------------LGVKSSFYAQDALRLWEIIYRYVEGIVSLHYKTDVAVKDDPELQTWCREITEIGLQGAQDRGFPVSLQARDQVCHFVTMCIFTCTG 538          
BLAST of EY728644 vs. ExPASy Swiss-Prot
Match: LOX5_MESAU (Arachidonate 5-lipoxygenase OS=Mesocricetus auratus GN=ALOX5 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 5.992e-23
Identity = 74/248 (29.84%), Postives = 123/248 (49.60%), Query Frame = 3
Query:  111 AGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGL-AVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVXHYYPDKSLVESDEELQAWWTEIRTVGHXGQEHEPWWPVLKTP*DLIEIITTIVLGTS 851
            A  + PIAI+L + P    P    +FLPS    +   W LAK  V + D   HQ ++H L TH  +E + IA  RQL  +HPI++LL  H R+T+ IN  AR+ L+   G+ + + + G            +   +     P+ + +RG+ + ED          I  Y + +DGL +W+AI+ + ++ V  YY D  +V  D+ELQ +  ++   G  G++   +   +K+   L E +T ++   S
Sbjct:  317 ANKIVPIAIQLNQAPGEKNP----IFLPSDAKYD---WLLAKIWVRSSDFHVHQTITHLLCTHLVSEVFGIAMYRQLPAVHPIFKLLVAHVRFTIAINTKAREQLICEYGLFDKANATGGGGHVQMVQRAVQDLTYSSLCFPEAIKARGMDSTED----------IPYYFYRDDGLLVWEAIQSFTSEVVSIYYEDDQVVMEDQELQDFVKDVYVYGMRGRKASGFPKSIKSREKLSEYLTVVIFTAS 547          

HSP 2 Score: 23.8682 bits (50), Expect = 5.992e-23
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 2
Query:  857 HAAVNFGQY 883
            HAAVNFGQY
Sbjct:  550 HAAVNFGQY 558          
BLAST of EY728644 vs. ExPASy Swiss-Prot
Match: LOX12_MOUSE (Arachidonate 12-lipoxygenase, 12S-type OS=Mus musculus GN=Alox12 PE=1 SV=4)

HSP 1 Score: 108.227 bits (269), Expect = 6.324e-23
Identity = 77/219 (35.16%), Postives = 100/219 (45.66%), Query Frame = 3
Query:  102 LTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVXHYYPDKSLVESDEELQAWWTEIRTVG 758
            + P G L P+AI++ +PP    P    +FLPS        W LAK  V   D    +L  H L TH   E   +AT R L  +HPI++LL PH RYTMEIN  +R  L++  GI +   S G             Q  +     P DL +RGL            L I    +A D L LW+   ++V   V  +Y    +V  D ELQAW  EI  VG
Sbjct:  305 MDPGGKLLPMAIQI-QPPNPSSPA-PTLFLPS---DPPLAWLLAKIWVRNSDFQLQELQFHLLNTHLVAEVIAVATMRCLPGLHPIFKLLVPHIRYTMEINTRSRTQLISDGGIFDQVVSTGGGGHVQLLTRAVAQLTYHSLCPPDDLANRGL------------LRIPSALYARDALQLWEVTARYVKGMVHLFYQSDDIVRGDPELQAWCREITEVG 506          
BLAST of EY728644 vs. ExPASy Swiss-Prot
Match: LOX12_HUMAN (Arachidonate 12-lipoxygenase, 12S-type OS=Homo sapiens GN=ALOX12 PE=1 SV=4)

HSP 1 Score: 108.227 bits (269), Expect = 6.324e-23
Identity = 76/219 (34.70%), Postives = 104/219 (47.49%), Query Frame = 3
Query:  102 LTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVXHYYPDKSLVESDEELQAWWTEIRTVG 758
            + P G L+P+ I++ +PP    P    +FLPS        W LAK+ V   D   H++  H L TH   E   +AT R L  +HPI++ L PH RYTMEIN  AR  L++  GI + + S G             Q  +     P DL  RGL            L +    +A+D L LW+ I ++V   V  +Y    +V+ D ELQAW  EI  VG
Sbjct:  305 MEPNGKLQPMVIQI-QPPNPSSPT-PTLFLPS---DPPLAWLLAKSWVRNSDFQLHEIQYHLLNTHLVAEVIAVATMRCLPGLHPIFKFLIPHIRYTMEINTRARTQLISDGGIFDKAVSTGGGGHVQLLRRAAAQLTYCSLCPPDDLADRGL------------LGLPGALYAHDALRLWEIIARYVEGIVHLFYQRDDIVKGDPELQAWCREITEVG 506          
BLAST of EY728644 vs. ExPASy Swiss-Prot
Match: LX12L_RAT (Arachidonate 12-lipoxygenase, leukocyte-type OS=Rattus norvegicus GN=Alox12l PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 1.079e-22
Identity = 75/224 (33.48%), Postives = 101/224 (45.09%), Query Frame = 3
Query:  102 LTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVXHYYPDKSLVESDEELQAWWTEIRTVGHXGQE 773
            L P G L PIAI+L  P     P    +F PS    +   W LAK  V + D   H+L +H LR H   E + +AT R L  +HP+++LL PH  YTMEIN  AR  L++  G  + + S G                +     P DL  RGL            L IE   +A D L LW  + ++V      +Y     V+ D ELQ+W  EI  +G  G +
Sbjct:  306 LMPDGQLLPIAIQLELPKTGSTPP--PIFTPSDPPMD---WLLAKCWVRSSDLQLHELQAHLLRGHLMAELFAVATMRCLPSVHPVFKLLVPHLLYTMEINVRARSDLISERGFFDKAMSTGGGGHLDLLKQAGAFLTYCSLCPPDDLAERGL------------LDIETCFYAKDALRLWQIMNRYVVGMFNLHYKTDKAVQDDYELQSWCREITDIGLQGAQ 512          
BLAST of EY728644 vs. ExPASy Swiss-Prot
Match: LX12L_MOUSE (Arachidonate 12-lipoxygenase, leukocyte-type OS=Mus musculus GN=Alox12l PE=1 SV=4)

HSP 1 Score: 107.457 bits (267), Expect = 1.079e-22
Identity = 74/224 (33.04%), Postives = 99/224 (44.20%), Query Frame = 3
Query:  102 LTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVXHYYPDKSLVESDEELQAWWTEIRTVGHXGQE 773
            L P G L PIAI+L  P     P    +F P     +   W LAK  V + D   H+L +H LR H   E + +AT R L  +HP+++LL PH  YTMEIN  AR  L++  G  +   S G                +     P DL  RGL            L I+   +A D L LW  + ++V      YY     V+ D ELQ+W  EI  +G  G +
Sbjct:  306 LQPDGQLLPIAIQLELPKTGSTPP--PIFTPLDPPMD---WLLAKCWVRSSDLQLHELQAHLLRGHLVAEVFAVATMRCLPSVHPVFKLLVPHLLYTMEINVRARSDLISERGFFDKVMSTGGGGHLDLLKQAGAFLTYSSLCPPDDLAERGL------------LDIDTCFYAKDALQLWQVMNRYVVGMFDLYYKTDQAVQDDYELQSWCQEITEIGLQGAQ 512          
The following BLAST results are available for this feature:
BLAST of EY728644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
LOX15_PONAB2.839e-2331.87Arachidonate 15-lipoxygenase OS=Pongo abelii GN=AL... [more]
LOX15_HUMAN4.842e-2331.87Arachidonate 15-lipoxygenase OS=Homo sapiens GN=AL... [more]
LOX5_MESAU5.992e-2329.84Arachidonate 5-lipoxygenase OS=Mesocricetus auratu... [more]
LOX12_MOUSE6.324e-2335.16Arachidonate 12-lipoxygenase, 12S-type OS=Mus musc... [more]
LOX12_HUMAN6.324e-2334.70Arachidonate 12-lipoxygenase, 12S-type OS=Homo sap... [more]
LX12L_RAT1.079e-2233.48Arachidonate 12-lipoxygenase, leukocyte-type OS=Ra... [more]
LX12L_MOUSE1.079e-2233.04Arachidonate 12-lipoxygenase, leukocyte-type OS=Mu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-006-F03-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728644 ID=EY728644; Name=EY728644; organism=Citrus sinensis; type=EST; length=885bp
CACGCGTCCGCTTAGATTACCATGACCTATTTTTACCATATGTGGAAAAA
GTGAGACAACTCAAAAGCACAACGTTGTATGGATCTCGCACAATTTTCTT
CCTAACACCAGCCGGCACATTGAGACCAATAGCTATTGAGCTCACTCGGC
CTCCAATGAATGGCAAGCCACAATGGAAACAAGTGTTTTTACCTTCTTGG
CACTCTACTGAGTGCTGGCTTTGGAAGCTAGCCAAAGCTCATGTCCTTGC
TCATGATGCTGGCTATCACCAGCTTGTCAGCCATTGGTTAAGAACTCATT
GTTGCACAGAACCTTACGTAATAGCAACCAATCGGCAACTCAGCGTGATG
CATCCAATCTATAGATTGTTGGATCCTCATTTTCGATACACAATGGAGAT
CAATGGTTTGGCTCGACAAGCTCTTGTTAATGCTGATGGAATCATTGAAA
GCTCATTCTCACCTGGAAAGTACTCTATGGAATTCAGCTCTGTTGCCTAT
GACAAGCAATGGCGCTTTGACCATGAAGCACTCCCCAAAGACCTAATTAG
CCGGGGATTGGCTGTTGAAGATCCAAGTGCTCCACATGGCTTGAAGCTAA
CAATTGAAGACTATCCTTTTGCCAATGATGGCCTTGATCTCTGGGATGCC
ATAAAACAATGGGTTACCGATTATGTNNATCACTACTACCCTGATAAAAG
CCTTGTAGAATCTGATGAAGAGCTCCAAGCTTGGTGGACTGAAATTCGAA
CTGTGGGACACNGTGGACAAGAACATGAACCTTGGTGGCCTGTCTTGAAA
ACCCCCTAGGATTTAATTGAAATCATCACAACTATTGTTTTGGGTACATC
TGGTCACACGCAGCTGTTAACTTCGGCCAATACAT
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