EY728626

Overview
NameEY728626
Unique NameEY728626
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY728626 vs. ExPASy Swiss-Prot
Match: PP379_ARATH (Pentatricopeptide repeat-containing protein At5g13770, chloroplastic OS=Arabidopsis thaliana GN=At5g13770 PE=2 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 9.804e-11
Identity = 29/88 (32.95%), Postives = 48/88 (54.55%), Query Frame = 2 
Query:  233 IIDGLCKE-GFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRL 493
            I++G  K+ GF +  K     MK++  +   VTY   I  +C  + +N+A+ LF EM+ +G    VV ++ IMD   K  ++ +A RL
Sbjct:  359 IVNGFSKQRGFAEAVKVYEWAMKEE-CEAGQVTYAIAINAYCRLEKYNKAEMLFDEMVKKGFDKCVVAYSNIMDMYGKTRRLSDAVRL 445

HSP 2 Score: 40.0466 bits (92), Expect = 9.804e-11
Identity = 27/111 (24.32%), Postives = 54/111 (48.65%), Query Frame = 3 
Query:  504 MIQHGVRPDAFTYNTLLDGFCLTGKVNHAXELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALRLYSEMLSKGIKPNVVIHNTLVVGLFG-IHQVERAFKLFDKMQRNG 833
            M Q G +P+ + YN+L+D       +  A +++  M+         SY+ +I+ Y ++KE+E  + LY E      K +  +   ++VG+F    +++   +L   M+  G
Sbjct:  449 MKQRGCKPNIWIYNSLIDMHGRAMDLRRAEKIWKEMKRAKVLPDKVSYTSMISAYNRSKELERCVELYQEFRMNRGKIDRAMAG-IMVGVFSKTSRIDELMRLLQDMKVEG 558
The following BLAST results are available for this feature:
BLAST of EY728626 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
PP379_ARATH9.804e-1132.95Pentatricopeptide repeat-containing protein At5g13... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-006-D06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728626 ID=EY728626; Name=EY728626; organism=Citrus sinensis; type=EST; length=845bp
CACGCGTCCGAAAGGTTTGTGTGCGGAGAGTAGAATCATGGAGGCCGCCG
CATTGTTTACGAAACTTAGAGTGTTTGGTTGTGAGCCCGATGTTTTTACA
TACACCACATTGGTTAATGGATTGTGTCGAACAAGCCATACAATTGTTGC
TCTAAATTTATTTGAAGAGATGGCTAATGGAAATGGGGAATTTGGTGTTG
TTTGTGAGCCAAACACTGTTACATACACTACTATTATAGATGGTCTTTGT
AAGGAAGGTTTTGTGGACAAGGCCAAGGAACTGCTTCTGCAGATGAAGGA
TAAGAATATTAAACCTAACGTGGTTACTTATACCTCTGTGATTCGTGGTT
TCTGTTATGCTAAGGATTGGAACGAGGCGAAGCGTTTGTTTATTGAGATG
ATGGATCAAGGGGTACAGCCTAATGTTGTGACTTTCAATGTGATCATGGA
TGAGCTCTGCAAGAATGGGAAGATGGATGAAGCAAGTAGGTTGTCTGGAC
TTGATGATTCAGCATGGTGTGCGTCCAGATGCTTTTACCTATAACACATT
ACTGGACGGGTTTTGCTTGACAGGTAAAGTTAATCATGCGAANGAACTAT
TTGTTTCTATGGAGAGTATGGGTTGCAAACATACTGTTTTTAGTTACAGT
ATTTTGATAAATGGTTACTGCAAGAATAAGGAAATAGAGGGAGCGTTACG
CCTTTATAGCGAAATGCTCTCTAAAGGAATTAAGCCAAATGTTGTTATAC
ATAACACCTTGGTTGTGGGCCTTTTTGGAATACACCAGGTTGAACGTGCT
TTCAAGCTGTTTGATAAAATGCAGCGTAATGGGCGTGCGACTGGA
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