EY728614

Overview
NameEY728614
Unique NameEY728614
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length782
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728614 vs. ExPASy Swiss-Prot
Match: BETA_BURCA (Choline dehydrogenase OS=Burkholderia cenocepacia (strain AU 1054) GN=betA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.164e-37
Identity = 87/224 (38.84%), Postives = 123/224 (54.91%), Query Frame = -1
Query:    3 PAVVMLAGIGDPDELKPLGXELRHHCPGVGKXLQDHVPVAIQYSTPKQGVSPTRALSPLGRLFVGARWMAARSGLGASNYFEVGAFFRGNDQVEYANLEHEFLPMVGEFYRGKARITPGFQYFTSVMRPASRGSVTXASKDPKADPLIRLNFLTAPGDLEQLREGLRKTREMIAQRSWDELRGEELSPGKHLQSDAELEAWIRDNAGTTFHACSTCRMGVDEMA 674
            P ++  +G+G    LK L   +    PGVG+ LQDH+ + IQY   K+ VS   AL    +  +G  WM   +GLGASN+FE G F R  D   + N+++ FLP+   +    A    GFQ     MR  SRG V   S+DP   P I  N++    D  + R+ +R TRE++ Q + D  RG EL+PG   +SD EL+A++R  A T FH   +C+MG D+MA
Sbjct:  265 PQLLQRSGVGPGAWLKELDIPVVLDLPGVGQNLQDHLEMYIQYEC-KEPVSLYPALKWWNQPKIGLEWMLNGTGLGASNHFEAGGFIRTRDDDPWPNIQYHFLPVAINYNGSNAIEMHGFQAHVGSMRSPSRGRVKLRSRDPNDHPSILFNYMAEALDWREFRDAIRATREIMRQPALDRYRGRELNPGADCKSDKELDAFVRARAETAFHPSCSCKMGYDDMA 487          
BLAST of EY728614 vs. ExPASy Swiss-Prot
Match: BETA_VIBVY (Choline dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=betA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.826e-37
Identity = 81/230 (35.22%), Postives = 128/230 (55.65%), Query Frame = -1
Query:    9 SSVRSLRFPAVVMLAGIGDPDELKPLGXELRHHCPGVGKXLQDHVPVAIQYSTPKQGVSPTRALSPLGRLFVGARWMAARSGLGASNYFEVGAFFRGNDQVEYANLEHEFLPMVGEFYRGKARITPGFQYFTSVMRPASRGSVTXASKDPKADPLIRLNFLTAPGDLEQLREGLRKTREMIAQRSWDELRGEELSPGKHLQSDAELEAWIRDNAGTTFHACSTCRMGVDE 698
            SS  S+    ++ L+GIG    L+  G    +H PGVG+ LQDH+ V  QY   K  ++    L    +  +G  W+  R GLGA+N+FE  AF R    +++ N+++ FLP    +    A    GFQ      +P SRG V   S +P   P I+ N+L+   D +  R+ +R TRE++AQ + DE RGEE+ PG ++ +DAE++ W+++N  + +H   +C+MG D+
Sbjct:  253 SSAGSIGSVQLLQLSGIGPKTVLEKAGVTPVYHLPGVGQNLQDHLEVYFQYHCQKP-ITLNGKLDWFSKGLIGTEWILTRKGLGATNHFESCAFIRSRAGLKWPNIQYHFLPAAMRYDGQAAFDGHGFQVHVGPNKPESRGRVEIVSANPLDKPKIQFNYLSTERDRQDWRDCIRLTREILAQPAMDEFRGEEIQPGINVATDAEIDQWVKENVESAYHPSCSCKMGADD 481          
BLAST of EY728614 vs. ExPASy Swiss-Prot
Match: BETA_STRM5 (Choline dehydrogenase OS=Stenotrophomonas maltophilia (strain R551-3) GN=betA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.691e-37
Identity = 80/219 (36.53%), Postives = 124/219 (56.62%), Query Frame = -1
Query:   18 PAVVMLAGIGDPDELKPLGXELRHHCPGVGKXLQDHVPVAIQYSTPKQGVSPTRALSPLGRLFVGARWMAARSGLGASNYFEVGAFFRGNDQVEYANLEHEFLPMVGEFYRGKARITPGFQYFTSVMRPASRGSVTXASKDPKADPLIRLNFLTAPGDLEQLREGLRKTREMIAQRSWDELRGEELSPGKHLQSDAELEAWIRDNAGTTFHACSTCRMG 674
            P ++  +G+G  D L+ L  +L HH PGVG  LQDH+ + +QY   K+ VS   AL    +  +GA W+   +G+GASN FE G F R + + ++ NL++ FLP+   +          FQ     MR  SRG +   SKDP+  P I  N+++   D  + R  +R TRE+ AQ +     G E+SPG  LQ+DA+++A++R++A T +H   + +MG
Sbjct:  266 PQILQRSGVGPADLLRSLDIDLVHHLPGVGANLQDHLEMYLQYEC-KKPVSLAPALKLYNQPAIGAEWLFLGTGIGASNQFEAGGFIRSDTEFDWPNLQYHFLPVAINYNGSNPIKAHSFQMHVGSMRSPSRGRIHVRSKDPREHPSILFNYMSHDQDWREFRAAIRITREIFAQPALAPYSGREISPGSALQTDAQIDAFVREHAETAYHPSCSNKMG 483          
BLAST of EY728614 vs. ExPASy Swiss-Prot
Match: BETA_BURS3 (Choline dehydrogenase OS=Burkholderia sp. (strain 383) GN=betA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.691e-37
Identity = 87/224 (38.84%), Postives = 123/224 (54.91%), Query Frame = -1
Query:    3 PAVVMLAGIGDPDELKPLGXELRHHCPGVGKXLQDHVPVAIQYSTPKQGVSPTRALSPLGRLFVGARWMAARSGLGASNYFEVGAFFRGNDQVEYANLEHEFLPMVGEFYRGKARITPGFQYFTSVMRPASRGSVTXASKDPKADPLIRLNFLTAPGDLEQLREGLRKTREMIAQRSWDELRGEELSPGKHLQSDAELEAWIRDNAGTTFHACSTCRMGVDEMA 674
            P ++  +G+G    LK L   +    PGVG+ LQDH+ + IQY   K+ VS   AL    +  +G  WM   +GLGASN+FE G F R  D   + N+++ FLP+   +    A    GFQ     MR  SRG V   S+DP   P I  N++    D  + R+ +R TRE++ Q + D  RG EL+PG   +SD EL+A++R  A T FH   +C+MG D+MA
Sbjct:  265 PQLLQRSGVGPGAWLKELDIPVVLDLPGVGQNLQDHLEMYIQYEC-KEPVSLYPALKWWNQPKIGLEWMLNGTGLGASNHFEAGGFIRTRDDDLWPNIQYHFLPVAINYNGSNAIEMHGFQAHVGSMRSPSRGRVKLRSRDPNDHPSILFNYMAEALDWREFRDAIRATREIMRQPALDRYRGRELNPGADCKSDKELDAFVRARAETAFHPSCSCKMGYDDMA 487          
BLAST of EY728614 vs. ExPASy Swiss-Prot
Match: BETA_STRMK (Choline dehydrogenase OS=Stenotrophomonas maltophilia (strain K279a) GN=betA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.820e-37
Identity = 80/219 (36.53%), Postives = 124/219 (56.62%), Query Frame = -1
Query:   18 PAVVMLAGIGDPDELKPLGXELRHHCPGVGKXLQDHVPVAIQYSTPKQGVSPTRALSPLGRLFVGARWMAARSGLGASNYFEVGAFFRGNDQVEYANLEHEFLPMVGEFYRGKARITPGFQYFTSVMRPASRGSVTXASKDPKADPLIRLNFLTAPGDLEQLREGLRKTREMIAQRSWDELRGEELSPGKHLQSDAELEAWIRDNAGTTFHACSTCRMG 674
            P ++  +G+G  D L+ L  +L HH PGVG  LQDH+ + +QY   K+ VS   AL    +  +GA W+   +G+GASN FE G F R + + ++ NL++ FLP+   +          FQ     MR  SRG +   SKDP+  P I  N+++   D  + R  +R TRE+ AQ +     G E+SPG  LQ+DA+++A++R++A T +H   + +MG
Sbjct:  266 PQILQRSGVGPADLLRSLDIDLVHHLPGVGANLQDHLEMYLQYEC-KKPVSLAPALKLYNQPAIGAEWLFLGTGIGASNQFEAGGFIRSDAEFDWPNLQYHFLPVAINYNGSNPIKAHSFQMHVGSMRSPSRGRIHVRSKDPREHPSILFNYMSHEQDWREFRAAIRITREIFAQPALAPYSGREISPGSALQTDAQIDAFVREHAETAYHPSCSNKMG 483          
BLAST of EY728614 vs. ExPASy Swiss-Prot
Match: BETA_BURVG (Choline dehydrogenase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=betA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.820e-37
Identity = 86/224 (38.39%), Postives = 122/224 (54.46%), Query Frame = -1
Query:    3 PAVVMLAGIGDPDELKPLGXELRHHCPGVGKXLQDHVPVAIQYSTPKQGVSPTRALSPLGRLFVGARWMAARSGLGASNYFEVGAFFRGNDQVEYANLEHEFLPMVGEFYRGKARITPGFQYFTSVMRPASRGSVTXASKDPKADPLIRLNFLTAPGDLEQLREGLRKTREMIAQRSWDELRGEELSPGKHLQSDAELEAWIRDNAGTTFHACSTCRMGVDEMA 674
            P ++  +G+G    LK L   +    PGVG+ LQDH+ + IQY   K+ VS   AL    +  +G  WM   +GLGASN+FE G F R  D   + N+++ FLP+   +    A    GFQ     MR  SRG V   S+DP   P I  N++    D  + R+ +R TRE++ Q + D  RG EL+PG   +SD EL+ ++R  A T FH   +C+MG D+MA
Sbjct:  265 PQLLQRSGVGPGAWLKELDIPIVLDLPGVGQNLQDHLEMYIQYEC-KEPVSLYPALKWWNQPKIGLEWMLNGTGLGASNHFEAGGFIRTRDDDPWPNIQYHFLPVAINYNGSNAIEMHGFQAHVGSMRSPSRGRVKLRSRDPNDHPSILFNYMAEALDWREFRDAIRATREIMRQPALDRYRGRELNPGADCRSDKELDTFVRARAETAFHPSCSCKMGYDDMA 487          
BLAST of EY728614 vs. ExPASy Swiss-Prot
Match: BETA_BURCJ (Choline dehydrogenase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=betA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.820e-37
Identity = 86/224 (38.39%), Postives = 123/224 (54.91%), Query Frame = -1
Query:    3 PAVVMLAGIGDPDELKPLGXELRHHCPGVGKXLQDHVPVAIQYSTPKQGVSPTRALSPLGRLFVGARWMAARSGLGASNYFEVGAFFRGNDQVEYANLEHEFLPMVGEFYRGKARITPGFQYFTSVMRPASRGSVTXASKDPKADPLIRLNFLTAPGDLEQLREGLRKTREMIAQRSWDELRGEELSPGKHLQSDAELEAWIRDNAGTTFHACSTCRMGVDEMA 674
            P ++  +G+G    LK L   +    PGVG+ LQDH+ + IQY   K+ VS   AL    +  +G  WM   +GLGASN+FE G F R  D   + N+++ FLP+   +    A    GFQ     MR  SRG V   S+DP   P I  N++    D  + R+ +R TRE++ Q + D  RG EL+PG   ++D EL+A++R  A T FH   +C+MG D+MA
Sbjct:  265 PQLLQRSGVGPGAWLKALDIPVVLDLPGVGQNLQDHLEMYIQYEC-KEPVSLYPALKWWNQPKIGLEWMLNGTGLGASNHFEAGGFIRTRDDDPWPNIQYHFLPVAINYNGSNAIEMHGFQAHVGSMRSPSRGRVKLRSRDPNDHPSILFNYMAEALDWREFRDAIRATREIMRQPALDRYRGRELNPGADCKTDKELDAFVRARAETAFHPSCSCKMGYDDMA 487          
BLAST of EY728614 vs. ExPASy Swiss-Prot
Match: BETA_BURMA (Choline dehydrogenase OS=Burkholderia mallei GN=betA PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 6.295e-37
Identity = 85/224 (37.95%), Postives = 124/224 (55.36%), Query Frame = -1
Query:    3 PAVVMLAGIGDPDELKPLGXELRHHCPGVGKXLQDHVPVAIQYSTPKQGVSPTRALSPLGRLFVGARWMAARSGLGASNYFEVGAFFRGNDQVEYANLEHEFLPMVGEFYRGKARITPGFQYFTSVMRPASRGSVTXASKDPKADPLIRLNFLTAPGDLEQLREGLRKTREMIAQRSWDELRGEELSPGKHLQSDAELEAWIRDNAGTTFHACSTCRMGVDEMA 674
            P ++  +G+G  + L+ L   +    PGVG+ LQDH+ + IQ+   K+ VS   AL    +  +G  WM   +GLGASN+FE G F R  D   + N+++ FLP+   +    A    GFQ     MR  S G V   S+DP A P I  N++    D  + R+ +R TRE++ Q + D  RG EL+PG  L+SD EL+ ++R  A T FH   +C+MG D+MA
Sbjct:  265 PQLLQRSGVGPGEWLRELDIPVVLDLPGVGRNLQDHLEMYIQFEC-KEPVSLYPALKWWNQPKIGLEWMLNGTGLGASNHFEAGGFIRTRDDDPWPNIQYHFLPVAINYNGSNAIEMHGFQAHVGSMRSPSCGRVKLKSRDPHAHPSILFNYMAEALDWREFRDAIRATREIMRQPALDRFRGRELNPGADLKSDNELDTFVRARAETAFHPSCSCKMGYDDMA 487          
BLAST of EY728614 vs. ExPASy Swiss-Prot
Match: BETA_VIBHB (Choline dehydrogenase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=betA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.025e-35
Identity = 79/230 (34.35%), Postives = 123/230 (53.48%), Query Frame = -1
Query:    9 SSVRSLRFPAVVMLAGIGDPDELKPLGXELRHHCPGVGKXLQDHVPVAIQYSTPKQGVSPTRALSPLGRLFVGARWMAARSGLGASNYFEVGAFFRGNDQVEYANLEHEFLPMVGEFYRGKARITPGFQYFTSVMRPASRGSVTXASKDPKADPLIRLNFLTAPGDLEQLREGLRKTREMIAQRSWDELRGEELSPGKHLQSDAELEAWIRDNAGTTFHACSTCRMGVDE 698
            SS  S+    ++ L+GIG    L   G E++H   GVGK LQDH+ V  QY   KQ ++    L  + +  +G  W+  R GLGA+N+FE  AF R  + ++  N++  FLP    +    A    GFQ      +P SRGSV   S +P   P I  N+++   D +  R+ +R TRE++ Q + D  RGEE+ PG ++ SD  +  W++ N  + +H   +C+MG ++
Sbjct:  253 SSAGSIGSVQLLQLSGIGPKTVLDKAGIEVKHTLEGVGKNLQDHLEVYFQYHC-KQPITLNSKLGLISKGLIGTEWILTRKGLGATNHFESCAFIRSREGLKSPNIQFHFLPAAMRYDGRAAFDGHGFQVHVGPNKPESRGSVEVVSANPNDKPKIEFNYISTEQDKQDWRDCIRLTREILNQPAMDAFRGEEIQPGLNITSDEAIGEWVKQNVESAYHPSCSCKMGSND 481          
BLAST of EY728614 vs. ExPASy Swiss-Prot
Match: CHDH_MOUSE (Choline dehydrogenase, mitochondrial OS=Mus musculus GN=Chdh PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.988e-34
Identity = 75/223 (33.63%), Postives = 126/223 (56.50%), Query Frame = -1
Query:   18 SLRFPAVVMLAGIGDPDELKPLGXELRHHCPGVGKXLQDHVPVAIQYSTPKQGVSPTRALSPLGRLFVGARWMAARSGLGASNYFEVGAFFRGNDQVEYANLEHEFLPMVGEFYRGKARITPGFQYFTSVMRPASRGSVTXASKDPKADPLIRLNFLTAPGDLEQLREGLRKTREMIAQRSWDELRGEELSPGKHLQSDAELEAWIRDNAGTTFHACSTCRMG 686
            ++  P ++ML+G+G+ D+L+ L   +  H PGVG+ LQDH+ V +Q +   Q ++   A  PL ++ +G  W+ + +G GA+ + E G F R    V + +++  FLP     +  K      +Q     MR  S G +   S +P+  P+I  N+L+   D+E  R+ +R +RE+ AQ +    RG+EL PG H+QSD E++A++R  A + +H   TC+MG
Sbjct:  300 AINSPQLLMLSGVGNADDLRKLDIPVVCHLPGVGQNLQDHLEVYVQQACT-QPITLHSAQKPLRKVCIGLEWLWSYTGDGATAHLETGGFIRSRPGVPHPDIQFHFLPSQVIDHGRKPTQQEAYQVHVGTMRATSVGWLKLRSANPRDHPVIHPNYLSTETDVEDFRQCVRLSREIFAQEALAPFRGKELQPGSHVQSDKEIDAFVRAKADSAYHPSCTCKMG 521          
The following BLAST results are available for this feature:
BLAST of EY728614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
BETA_BURCA2.164e-3738.84Choline dehydrogenase OS=Burkholderia cenocepacia ... [more]
BETA_VIBVY2.826e-3735.22Choline dehydrogenase OS=Vibrio vulnificus (strain... [more]
BETA_STRM53.691e-3736.53Choline dehydrogenase OS=Stenotrophomonas maltophi... [more]
BETA_BURS33.691e-3738.84Choline dehydrogenase OS=Burkholderia sp. (strain ... [more]
BETA_STRMK4.820e-3736.53Choline dehydrogenase OS=Stenotrophomonas maltophi... [more]
BETA_BURVG4.820e-3738.39Choline dehydrogenase OS=Burkholderia vietnamiensi... [more]
BETA_BURCJ4.820e-3738.39Choline dehydrogenase OS=Burkholderia cepacia (str... [more]
BETA_BURMA6.295e-3737.95Choline dehydrogenase OS=Burkholderia mallei GN=be... [more]
BETA_VIBHB2.025e-3534.35Choline dehydrogenase OS=Vibrio harveyi (strain AT... [more]
CHDH_MOUSE4.988e-3433.63Choline dehydrogenase, mitochondrial OS=Mus muscul... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-006-C05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728614 ID=EY728614; Name=EY728614; organism=Citrus sinensis; type=EST; length=782bp
ACCGCCATCTCGTCCACCCCCATGCGGCAGGTGGAACAGGCGTGGAAAGT
GGTGCCGGCGTTGTCGCGGATCCAGGCTTCCAGCTCGGCATCGCTCTGCA
GGTGCTTGCCGGGGCTGAGCTCCTCGCCGCGCAGTTCGTCCCAGGAGCGC
TGGGCGATCATTTCCCGGGTCTTGCGCAGGCCTTCGCGCAGTTGCTCCAG
GTCGCCCGGCGCGGTGAGGAAGTTCAGGCGGATCAGCGGATCGGCCTTGG
GATCCTTCGAGGCCANGGTGACGCTGCCACGACTGGCCGGGCGCATGACG
CTGGTGAAGTACTGGAAGCCCGGGGTGATGCGCGCCTTGCCGCGGTAGAA
CTCGCCCACCATGGGGAGAAATTCGTGCTCCAGGTTGGCGTACTCGACCT
GGTCGTTGCCACGGAAGAACGCCCCCACCTCGAAGTAGTTGGACGCCCCC
AGGCCACTGCGCGCGGCCATCCAGCGCGCCCCGACGAACAGCCGCCCGAG
CGGCGACAGCGCGCGGGTCGGCGACACACCCTGCTTGGGCGTCGAATACT
GGATCGCCACGGGCACGTGGTCCTGCAGGTNCTTGCCGACCCCGGGGCAG
TGGTGGCGCAGCTCNATGCCGAGGGGCTTGAGCTCGTCCGGATCACCGAT
GCCGGCGAGCATCACAACTGCCGGGAACCGGAGGGACCGGACTGAGGATC
CTTGCTTGGCGGCAGGATGGATTGTCCAGGCATTGACTTTGTATTTCACC
CTAACGCCTCCTTGCCGAAAAAACCACCCGCC
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