EY728614

Overview
NameEY728614
Unique NameEY728614
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length782
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728614 vs. ExPASy Swiss-Prot
Match: CHDH_HUMAN (Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=2 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.895e-33
Identity = 76/223 (34.08%), Postives = 125/223 (56.05%), Query Frame = -1
Query:   18 SLRFPAVVMLAGIGDPDELKPLGXELRHHCPGVGKXLQDHVPVAIQYSTPKQGVSPTRALSPLGRLFVGARWMAARSGLGASNYFEVGAFFRGNDQVEYANLEHEFLPMVGEFYRGKARITPGFQYFTSVMRPASRGSVTXASKDPKADPLIRLNFLTAPGDLEQLREGLRKTREMIAQRSWDELRGEELSPGKHLQSDAELEAWIRDNAGTTFHACSTCRMG 686
            ++  P ++ML+GIG+ D+LK LG  +  H PGVG+ LQDH+ + IQ +  +  ++   A  PL ++ +G  W+   +G GA+ + E G F R    V + +++  FLP     +         +Q     MR  S G +   S +P+  P+I+ N+L+   D+E  R  ++ TRE+ AQ +    RG+EL PG H+QSD E++A++R  A + +H   TC+MG
Sbjct:  298 AINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDHLEIYIQQACTRP-ITLHSAQKPLRKVCIGLEWLWKFTGEGATAHLETGGFIRSQPGVPHPDIQFHFLPSQVIDHGRVPTQQEAYQVHVGPMRGTSVGWLKLRSANPQDHPVIQPNYLSTETDIEDFRLCVKLTREIFAQEALAPFRGKELQPGSHIQSDKEIDAFVRAKADSAYHPSCTCKMG 519          
BLAST of EY728614 vs. ExPASy Swiss-Prot
Match: ALKJ_PSEPU (Alcohol dehydrogenase [acceptor] OS=Pseudomonas putida GN=alkJ PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.679e-24
Identity = 76/232 (32.76%), Postives = 116/232 (50.00%), Query Frame = -1
Query:   12 SVRSLRFPAVVMLAGIGDPDELKPLGXELRHHCPGVGKXLQDHVPVAIQYSTPKQ---GVSPTRALSPLGRLFVGA-RWMAARSGLGASNYFEVGAFFRGNDQVEYANLEHEFLPMVGEFYRGKARITPGFQYFTSVMRPASRGSVTXASKDPKADPLIRLNFLTAPGDLEQLREGLRKTREMIAQRSWDELRGEELSPGKHLQSDAELEAWIRDNAGTTFHACSTCRMGVD 695
            S+ ++  P ++ML+G+G   ELK  G  L H  P VGK LQDH+ + +  +   +   GV    A S + R  VG   ++  R G   SN  E G F + + + +  NL+  FLP   + +  K  +  G+      + P SRG +   S +P  DPLI  N+L+ P D++ +  G++  R +    S  +    E+ PG  + SD E+ A IR  A T +H   TCRMG D
Sbjct:  252 SLGAVNTPQLLMLSGVGAAAELKEHGIALVHDLPEVGKNLQDHLDITLMCAANSRTPIGV----AFSFIPRGLVGLFSYIFKRKGFLTSNVAESGGFVKSSPERDRPNLQFHFLPTYLKDHGRKIAVGYGYTLHICDLLPKSRGRIGLKSANPMDDPLIDPNYLSDPEDIKTMIAGIKIGRAIFDAPSMAKHFKREIVPGPAVTSDDEIVADIRSRAETIYHPVGTCRMGKD 479          
BLAST of EY728614 vs. ExPASy Swiss-Prot
Match: SDH_GLUOX (L-sorbose 1-dehydrogenase OS=Gluconobacter oxydans PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.409e-20
Identity = 75/228 (32.89%), Postives = 112/228 (49.12%), Query Frame = -1
Query:    3 PAVVMLAGIGDPDELKPLGXELRHHCPGVGKXLQDHVPVAIQYSTPKQGVSPTRALSPLGRLFVGARWMAARSGLGASNYFEVGAFFRGNDQVEYANLEHEFLPMVGEFYRGKARITPGFQYFTS---VMRPASRGSVTXASKDPKADPLIRLNFLTAPGDLEQLREGLRKTREMIAQRSWDE-LRGEELSPGKHLQSDAELEAWIRDNAGTTFHACSTCRMGVDEMA 674
            P ++ML+G+G    L+  G  +    PGVG+ LQDH  V I  +  K   S  +       L+ G  +   RSG  ASN  E GAF+  +      +L+  FL   G    G   +  G    T    V+RP SRG+V   S DP+ +P++  NFL  P DLE   EG+R + EM +Q S ++ +R      GK        + + R++  T++H   TC+MG D+M+
Sbjct:  258 PKLMMLSGVGPAAHLRENGIPVVQDLPGVGENLQDHFGVDI-VAELKTDESFDKYRKLHWMLWAGLEYTMFRSGPVASNVVEGGAFWYSDPSSGVPDLQFHFLAEAGA-EAGVTSVPKGASGITLNSYVLRPKSRGTVRLRSADPRVNPMVDPNFLGDPADLETSAEGVRLSYEMFSQPSLEKHIRKTCFFSGKQPTMQMYRD-YAREHGRTSYHPTCTCKMGRDDMS 482          
BLAST of EY728614 vs. ExPASy Swiss-Prot
Match: ALKJ_PSEOL (Alcohol dehydrogenase [acceptor] OS=Pseudomonas oleovorans GN=alkJ PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.354e-20
Identity = 69/231 (29.87%), Postives = 113/231 (48.92%), Query Frame = -1
Query:   12 SVRSLRFPAVVMLAGIGDPDELKPLGXELRHHCPGVGKXLQDHVPVAIQYSTPKQ---GVSPTRALSPLGRLFVGARWMAARSGLGASNYFEVGAFFRGNDQVEYANLEHEFLPMVGEFYRGKARITPGFQYFTSVMRPASRGSVTXASKDPKADPLIRLNFLTAPGDLEQLREGLRKTREMIAQRSWDELRGEELSPGKHLQSDAELEAWIRDNAGTTFHACSTCRMGVD 695
            S+ ++  P ++ML+G+G   ELK  G  L H  P VGK LQDH+ + +  +   +   GV+ +     +  LF    ++  R G   SN  E G F + +   +  NL+  FLP   + +  K     G+      + P SRG +   S +P   PLI  N+L+   D++ +  G++  R ++   S  +    E+ PG+ +++D E+   IR  A T +H   TCRMG D
Sbjct:  252 SLGAVGTPHLLMLSGVGAAAELKEHGVSLVHDLPEVGKNLQDHLDITLMCAANSREPIGVALSFIPRGVSGLF---SYVFKREGFLTSNVAESGGFVKSSPDRDRPNLQFHFLPTYLKDHGRKIAGGYGYTLHICDLLPKSRGRIGLKSANPLQPPLIDPNYLSDHEDIKTMIAGIKIGRAILQAPSMAKHFKHEVVPGQAVKTDDEIIEDIRRRAETIYHPVGTCRMGKD 479          
BLAST of EY728614 vs. ExPASy Swiss-Prot
Match: Y1310_MYCBO (Uncharacterized GMC-type oxidoreductase Mb1310 OS=Mycobacterium bovis GN=Mb1310 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.750e-16
Identity = 69/228 (30.26%), Postives = 105/228 (46.05%), Query Frame = -1
Query:    9 PAVVMLAGIGDPDELKPLGXELRHHCPGVGKXLQDHVPVAIQYSTPKQGVSPTRALSPLGRLFVGARWMAARSGLGASNYFEVGAFFRGNDQVEYANLEHEFLPMVGEFYRGKARITP---GFQYFTSVMRPASRGSVTXASKDPKADPLIRLNFLTAPGDLEQ--LREGLRKTREMIAQRSWDELRGEELSPGKHLQSD-AELEAWIRDNAGTTFHACSTCRMGVDE 674
            P ++ML+GIGD D L     +  +H P VG  L DH+   + +   K  +    A    G+L     ++  R G+  SN  E   F R   +++  +LE  F P    FY  +A + P   G  +   ++ P SRG +T  S DP A P+I   +L+  G +++  +  GLR    +   R   +L G    P    + D A LE  +   + T +H   TCRMG DE
Sbjct:  261 PQLLMLSGIGDRDHLAEHDIDTVYHAPEVGCNLLDHLVTVLGFDVEKDSLF---AAEKPGQLI---SYLLRRRGMLTSNVGEAYGFVRSRPELKLPDLELIFAP--APFY-DEALVPPAGHGVVFGPILVAPQSRGQITLRSADPHAKPVIEPRYLSDLGGVDRAAMMAGLRICARIAQARPLRDLLGSIARPRNSTELDEATLELALATCSHTLYHPMGTCRMGSDE 479          
BLAST of EY728614 vs. ExPASy Swiss-Prot
Match: Y1279_MYCTU (Uncharacterized GMC-type oxidoreductase Rv1279/MT1316 OS=Mycobacterium tuberculosis GN=Rv1279 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.750e-16
Identity = 69/228 (30.26%), Postives = 105/228 (46.05%), Query Frame = -1
Query:    9 PAVVMLAGIGDPDELKPLGXELRHHCPGVGKXLQDHVPVAIQYSTPKQGVSPTRALSPLGRLFVGARWMAARSGLGASNYFEVGAFFRGNDQVEYANLEHEFLPMVGEFYRGKARITP---GFQYFTSVMRPASRGSVTXASKDPKADPLIRLNFLTAPGDLEQ--LREGLRKTREMIAQRSWDELRGEELSPGKHLQSD-AELEAWIRDNAGTTFHACSTCRMGVDE 674
            P ++ML+GIGD D L     +  +H P VG  L DH+   + +   K  +    A    G+L     ++  R G+  SN  E   F R   +++  +LE  F P    FY  +A + P   G  +   ++ P SRG +T  S DP A P+I   +L+  G +++  +  GLR    +   R   +L G    P    + D A LE  +   + T +H   TCRMG DE
Sbjct:  261 PQLLMLSGIGDRDHLAEHDIDTVYHAPEVGCNLLDHLVTVLGFDVEKDSLF---AAEKPGQLI---SYLLRRRGMLTSNVGEAYGFVRSRPELKLPDLELIFAP--APFY-DEALVPPAGHGVVFGPILVAPQSRGQITLRSADPHAKPVIEPRYLSDLGGVDRAAMMAGLRICARIAQARPLRDLLGSIARPRNSTELDEATLELALATCSHTLYHPMGTCRMGSDE 479          
BLAST of EY728614 vs. ExPASy Swiss-Prot
Match: DHGL_DROPS (Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura pseudoobscura GN=Gld PE=3 SV=4)

HSP 1 Score: 75.0998 bits (183), Expect = 4.854e-13
Identity = 70/244 (28.69%), Postives = 103/244 (42.21%), Query Frame = -1
Query:   18 GSSVRSLRFPAVVMLAGIGDPDELKPLGXELRHHCPGVGKXLQDHVPVAIQYSTPKQGVSPTRALSPLGRLFVGARWMAARSGLGASNYFEVGAFFRGNDQVEYANLEHEF---------LPMVGEFYRGKARITPGFQYFTSVMRPASRGSVTXASKDPKADPLIRLNFLTAPGDLEQLREGLRKTREMIAQRSWDELRGEELS-------PGKHLQSDAELEAWIRDNAGTTFHACSTCRMG 701
            G +V S   P +++L+G+G  ++L+ +     HH PGVGK L +HV     +       +P    + +  L      M   SG G S+     A  R  D+    +L+  F            VGE     +R     Q F +V+ P SRG +T  S DP   P I  N+LT   D++ L EG+ K    ++Q S  +  G  L              SDA  E  +R N G   H   +C+MG
Sbjct:  320 GGAVNS---PQILLLSGVGPKEDLQKVNVRPVHHLPGVGKNLHNHVAYFTNFFIDDADTAPLNWATAMEYLLFRDGLM---SGTGISDVTAKMAT-RWADRPNLPDLQLYFGGYLASCARTGQVGELLSNNSR---AIQIFPAVLNPKSRGYITLRSADPLDPPRIFANYLTDERDVKTLVEGI-KFAIRLSQTSPLKQYGMRLDKTVVKGCESHAFASDAYWECAVRQNTGPENHQAGSCKMG 552          
BLAST of EY728614 vs. ExPASy Swiss-Prot
Match: DHGL_DROME (Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld PE=2 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 3.146e-12
Identity = 65/241 (26.97%), Postives = 101/241 (41.91%), Query Frame = -1
Query:   18 SVRSLRFPAVVMLAGIGDPDELKPLGXELRHHCPGVGKXLQDHVPVAIQYSTPKQGVSPTRALSPLGRLFVGARWMAARSGLGASNYFEVGAFFRGNDQVEYANLEHEF---------LPMVGEFYRGKARITPGFQYFTSVMRPASRGSVTXASKDPKADPLIRLNFLTAPGDLEQLREGLR---KTREMIAQRSWDELRGEELSPGKHLQ---SDAELEAWIRDNAGTTFHACSTCRMG 695
            S  ++  P +++L+G+G  DEL+ +     H+ PGVGK L +HV     +       +P    + +  L      M   SG G S+     A  R  D  E  +L+  F            VGE     +R     Q F +V+ P SRG +   S DP   P I  N+LT   D++ L EG++   +  +    + +     + +  G       SDA  E  +R N G   H   +C+MG
Sbjct:  319 SAGAVNSPHILLLSGVGPKDELQQVNVRTVHNLPGVGKNLHNHVTYFTNFFIDDADTAPLNWATAMEYLLFRDGLM---SGTGISDVTAKLA-TRYADSPERPDLQLYFGGYLASCARTGQVGELLSNNSR---SIQIFPAVLNPRSRGFIGLRSADPLEPPRIVANYLTHEQDVKTLVEGIKFVIRLSQTTPLKQYGMRLDKTVVKGCEAHAFGSDAYWECAVRQNTGPENHQAGSCKMG 552          
The following BLAST results are available for this feature:
BLAST of EY728614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
CHDH_HUMAN1.895e-3334.08Choline dehydrogenase, mitochondrial OS=Homo sapie... [more]
ALKJ_PSEPU4.679e-2432.76Alcohol dehydrogenase [acceptor] OS=Pseudomonas pu... [more]
SDH_GLUOX1.409e-2032.89L-sorbose 1-dehydrogenase OS=Gluconobacter oxydans... [more]
ALKJ_PSEOL5.354e-2029.87Alcohol dehydrogenase [acceptor] OS=Pseudomonas ol... [more]
Y1310_MYCBO2.750e-1630.26Uncharacterized GMC-type oxidoreductase Mb1310 OS=... [more]
Y1279_MYCTU2.750e-1630.26Uncharacterized GMC-type oxidoreductase Rv1279/MT1... [more]
DHGL_DROPS4.854e-1328.69Glucose dehydrogenase [acceptor] OS=Drosophila pse... [more]
DHGL_DROME3.146e-1226.97Glucose dehydrogenase [acceptor] OS=Drosophila mel... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-006-C05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728614 ID=EY728614; Name=EY728614; organism=Citrus sinensis; type=EST; length=782bp
ACCGCCATCTCGTCCACCCCCATGCGGCAGGTGGAACAGGCGTGGAAAGT
GGTGCCGGCGTTGTCGCGGATCCAGGCTTCCAGCTCGGCATCGCTCTGCA
GGTGCTTGCCGGGGCTGAGCTCCTCGCCGCGCAGTTCGTCCCAGGAGCGC
TGGGCGATCATTTCCCGGGTCTTGCGCAGGCCTTCGCGCAGTTGCTCCAG
GTCGCCCGGCGCGGTGAGGAAGTTCAGGCGGATCAGCGGATCGGCCTTGG
GATCCTTCGAGGCCANGGTGACGCTGCCACGACTGGCCGGGCGCATGACG
CTGGTGAAGTACTGGAAGCCCGGGGTGATGCGCGCCTTGCCGCGGTAGAA
CTCGCCCACCATGGGGAGAAATTCGTGCTCCAGGTTGGCGTACTCGACCT
GGTCGTTGCCACGGAAGAACGCCCCCACCTCGAAGTAGTTGGACGCCCCC
AGGCCACTGCGCGCGGCCATCCAGCGCGCCCCGACGAACAGCCGCCCGAG
CGGCGACAGCGCGCGGGTCGGCGACACACCCTGCTTGGGCGTCGAATACT
GGATCGCCACGGGCACGTGGTCCTGCAGGTNCTTGCCGACCCCGGGGCAG
TGGTGGCGCAGCTCNATGCCGAGGGGCTTGAGCTCGTCCGGATCACCGAT
GCCGGCGAGCATCACAACTGCCGGGAACCGGAGGGACCGGACTGAGGATC
CTTGCTTGGCGGCAGGATGGATTGTCCAGGCATTGACTTTGTATTTCACC
CTAACGCCTCCTTGCCGAAAAAACCACCCGCC
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