EY728614

Overview
NameEY728614
Unique NameEY728614
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length782
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728614 vs. ExPASy Swiss-Prot
Match: BETA_ECO45 (Choline dehydrogenase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=betA PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.470e-41
Identity = 85/224 (37.95%), Postives = 131/224 (58.48%), Query Frame = -1
Query:    3 PAVVMLAGIGDPDELKPLGXELRHHCPGVGKXLQDHVPVAIQYSTPKQGVSPTRALSPLGRLFVGARWMAARSGLGASNYFEVGAFFRGNDQVEYANLEHEFLPMVGEFYRGKARITPGFQYFTSVMRPASRGSVTXASKDPKADPLIRLNFLTAPGDLEQLREGLRKTREMIAQRSWDELRGEELSPGKHLQSDAELEAWIRDNAGTTFHACSTCRMGVDEMA 674
            P ++  +G+G+ + L      L H  PGVG+ LQDH+ + +QY   K+ VS   AL    +  +GA W+   +G+GASN+FE G F R  ++  + N+++ FLP+   +    A    GFQ     MR  SRG V   S+DP   P I  N+++   D ++ R+ +R TRE++ Q + D+ RG E+SPG   Q+D +L+ ++R++A T FH C TC+MG DEMA
Sbjct:  264 PQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDHLEMYLQYEC-KEPVSLYPALQWWNQPKIGAEWLFGGTGVGASNHFEAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSRGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGVECQTDEQLDEFVRNHAETAFHPCGTCKMGYDEMA 486          
BLAST of EY728614 vs. ExPASy Swiss-Prot
Match: BETA_XANCP (Choline dehydrogenase OS=Xanthomonas campestris pv. campestris GN=betA PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.226e-41
Identity = 89/224 (39.73%), Postives = 131/224 (58.48%), Query Frame = -1
Query:    3 PAVVMLAGIGDPDELKPLGXELRHHCPGVGKXLQDHVPVAIQYSTPKQGVSPTRALSPLGRLFVGARWMAARSGLGASNYFEVGAFFRGNDQVEYANLEHEFLPMVGEFYRGKARITPGFQYFTSVMRPASRGSVTXASKDPKADPLIRLNFLTAPGDLEQLREGLRKTREMIAQRSWDELRGEELSPGKHLQSDAELEAWIRDNAGTTFHACSTCRMGVDEMA 674
            P ++  +G+G PD L+ L  +L H  PGVG+ LQDH+ V +QY+  K  VS   AL    +  +GA W+ A +G GASN FE G F R  ++ ++ N+++ FLP+   +    A    GFQ     MR  SRG V   S+DP+  P I  N+ +   D ++ R+ +R TRE+IAQ + D  RG E+SP    ++DAEL+A++R  A T +H   +C MG D+MA
Sbjct:  266 PQLLQRSGVGAPDLLRALDVQLVHDLPGVGQNLQDHLEVYMQYACTKP-VSLYPALQWWNQPAIGAEWLFAGTGTGASNQFEAGGFIRTREEFDWPNIQYHFLPVAINYNGSNAVKEHGFQAHVGSMRTPSRGRVHARSRDPRQHPSILFNYQSTDQDWQEFRDAIRITREIIAQPALDPYRGREISPSADCKTDAELDAFVRARAETAYHPSCSCAMGTDDMA 488          
BLAST of EY728614 vs. ExPASy Swiss-Prot
Match: BETA_XANCB (Choline dehydrogenase OS=Xanthomonas campestris pv. campestris (strain B100) GN=betA PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.226e-41
Identity = 89/224 (39.73%), Postives = 131/224 (58.48%), Query Frame = -1
Query:    3 PAVVMLAGIGDPDELKPLGXELRHHCPGVGKXLQDHVPVAIQYSTPKQGVSPTRALSPLGRLFVGARWMAARSGLGASNYFEVGAFFRGNDQVEYANLEHEFLPMVGEFYRGKARITPGFQYFTSVMRPASRGSVTXASKDPKADPLIRLNFLTAPGDLEQLREGLRKTREMIAQRSWDELRGEELSPGKHLQSDAELEAWIRDNAGTTFHACSTCRMGVDEMA 674
            P ++  +G+G PD L+ L  +L H  PGVG+ LQDH+ V +QY+  K  VS   AL    +  +GA W+ A +G GASN FE G F R  ++ ++ N+++ FLP+   +    A    GFQ     MR  SRG V   S+DP+  P I  N+ +   D ++ R+ +R TRE+IAQ + D  RG E+SP    ++DAEL+A++R  A T +H   +C MG D+MA
Sbjct:  266 PQLLQRSGVGAPDLLRALDVQLVHDLPGVGQNLQDHLEVYMQYACTKP-VSLYPALQWWNQPAIGAEWLFAGTGTGASNQFEAGGFIRTREEFDWPNIQYHFLPVAINYNGSNAVKEHGFQAHVGSMRTPSRGRVHARSRDPRQHPSILFNYQSTDQDWQEFRDAIRITREIIAQPALDPYRGREISPSADCKTDAELDAFVRARAETAYHPSCSCAMGTDDMA 488          
BLAST of EY728614 vs. ExPASy Swiss-Prot
Match: BETA_XANC8 (Choline dehydrogenase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=betA PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.226e-41
Identity = 89/224 (39.73%), Postives = 131/224 (58.48%), Query Frame = -1
Query:    3 PAVVMLAGIGDPDELKPLGXELRHHCPGVGKXLQDHVPVAIQYSTPKQGVSPTRALSPLGRLFVGARWMAARSGLGASNYFEVGAFFRGNDQVEYANLEHEFLPMVGEFYRGKARITPGFQYFTSVMRPASRGSVTXASKDPKADPLIRLNFLTAPGDLEQLREGLRKTREMIAQRSWDELRGEELSPGKHLQSDAELEAWIRDNAGTTFHACSTCRMGVDEMA 674
            P ++  +G+G PD L+ L  +L H  PGVG+ LQDH+ V +QY+  K  VS   AL    +  +GA W+ A +G GASN FE G F R  ++ ++ N+++ FLP+   +    A    GFQ     MR  SRG V   S+DP+  P I  N+ +   D ++ R+ +R TRE+IAQ + D  RG E+SP    ++DAEL+A++R  A T +H   +C MG D+MA
Sbjct:  266 PQLLQRSGVGAPDLLRALDVQLVHDLPGVGQNLQDHLEVYMQYACTKP-VSLYPALQWWNQPAIGAEWLFAGTGTGASNQFEAGGFIRTREEFDWPNIQYHFLPVAINYNGSNAVKEHGFQAHVGSMRTPSRGRVHARSRDPRQHPSILFNYQSTDQDWQEFRDAIRITREIIAQPALDPYRGREISPSADCKTDAELDAFVRARAETAYHPSCSCAMGTDDMA 488          
BLAST of EY728614 vs. ExPASy Swiss-Prot
Match: BETA_ECOSE (Choline dehydrogenase OS=Escherichia coli (strain SE11) GN=betA PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.213e-41
Identity = 84/224 (37.50%), Postives = 131/224 (58.48%), Query Frame = -1
Query:    3 PAVVMLAGIGDPDELKPLGXELRHHCPGVGKXLQDHVPVAIQYSTPKQGVSPTRALSPLGRLFVGARWMAARSGLGASNYFEVGAFFRGNDQVEYANLEHEFLPMVGEFYRGKARITPGFQYFTSVMRPASRGSVTXASKDPKADPLIRLNFLTAPGDLEQLREGLRKTREMIAQRSWDELRGEELSPGKHLQSDAELEAWIRDNAGTTFHACSTCRMGVDEMA 674
            P ++  +G+G+ + L      L H  PGVG+ LQDH+ + +QY   K+ VS   AL    +  +GA W+   +G+GASN+FE G F R  ++  + N+++ FLP+   +    A    GFQ     MR  SRG V   S+DP   P I  N+++   D ++ R+ +R TRE++ Q + D+ RG E+SPG   Q+D +L+ ++R++A T FH C TC+MG DEM+
Sbjct:  264 PQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDHLEMYLQYEC-KEPVSLYPALQWWNQPKIGAEWLFGGTGVGASNHFEAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSRGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGTECQTDEQLDEFVRNHAETAFHPCGTCKMGYDEMS 486          
BLAST of EY728614 vs. ExPASy Swiss-Prot
Match: BETA_ECOLU (Choline dehydrogenase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=betA PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.213e-41
Identity = 85/224 (37.95%), Postives = 130/224 (58.04%), Query Frame = -1
Query:    3 PAVVMLAGIGDPDELKPLGXELRHHCPGVGKXLQDHVPVAIQYSTPKQGVSPTRALSPLGRLFVGARWMAARSGLGASNYFEVGAFFRGNDQVEYANLEHEFLPMVGEFYRGKARITPGFQYFTSVMRPASRGSVTXASKDPKADPLIRLNFLTAPGDLEQLREGLRKTREMIAQRSWDELRGEELSPGKHLQSDAELEAWIRDNAGTTFHACSTCRMGVDEMA 674
            P ++  +G+G  + L      L H  PGVG+ LQDH+ + +QY   K+ VS   AL    +  +GA W+   +G+GASN+FE G F R  ++  + N+++ FLP+   +    A    GFQ     MR  SRG V   S+DP   P I  N+++   D ++ R+ +R TRE++ Q + D+ RG E+SPG   Q+D +L+ ++R++A T FH C TC+MG DEMA
Sbjct:  264 PQILQRSGVGSAELLAEFDIPLVHDLPGVGENLQDHLEMYLQYEC-KEPVSLYPALQWWNQPKIGAEWLFGGTGVGASNHFEAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSRGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGVECQTDEQLDEFVRNHAETAFHPCGTCKMGYDEMA 486          
BLAST of EY728614 vs. ExPASy Swiss-Prot
Match: BETA_ECOHS (Choline dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=betA PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.213e-41
Identity = 84/224 (37.50%), Postives = 131/224 (58.48%), Query Frame = -1
Query:    3 PAVVMLAGIGDPDELKPLGXELRHHCPGVGKXLQDHVPVAIQYSTPKQGVSPTRALSPLGRLFVGARWMAARSGLGASNYFEVGAFFRGNDQVEYANLEHEFLPMVGEFYRGKARITPGFQYFTSVMRPASRGSVTXASKDPKADPLIRLNFLTAPGDLEQLREGLRKTREMIAQRSWDELRGEELSPGKHLQSDAELEAWIRDNAGTTFHACSTCRMGVDEMA 674
            P ++  +G+G+ + L      L H  PGVG+ LQDH+ + +QY   K+ VS   AL    +  +GA W+   +G+GASN+FE G F R  ++  + N+++ FLP+   +    A    GFQ     MR  SRG V   S+DP   P I  N+++   D ++ R+ +R TRE++ Q + D+ RG E+SPG   Q+D +L+ ++R++A T FH C TC+MG DEM+
Sbjct:  264 PQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDHLEMYLQYEC-KEPVSLYPALQWWNQPKIGAEWLFGGTGVGASNHFEAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSRGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGTECQTDEQLDEFVRNHAETAFHPCGTCKMGYDEMS 486          
BLAST of EY728614 vs. ExPASy Swiss-Prot
Match: BETA_ECO8A (Choline dehydrogenase OS=Escherichia coli O8 (strain IAI1) GN=betA PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.213e-41
Identity = 84/224 (37.50%), Postives = 131/224 (58.48%), Query Frame = -1
Query:    3 PAVVMLAGIGDPDELKPLGXELRHHCPGVGKXLQDHVPVAIQYSTPKQGVSPTRALSPLGRLFVGARWMAARSGLGASNYFEVGAFFRGNDQVEYANLEHEFLPMVGEFYRGKARITPGFQYFTSVMRPASRGSVTXASKDPKADPLIRLNFLTAPGDLEQLREGLRKTREMIAQRSWDELRGEELSPGKHLQSDAELEAWIRDNAGTTFHACSTCRMGVDEMA 674
            P ++  +G+G+ + L      L H  PGVG+ LQDH+ + +QY   K+ VS   AL    +  +GA W+   +G+GASN+FE G F R  ++  + N+++ FLP+   +    A    GFQ     MR  SRG V   S+DP   P I  N+++   D ++ R+ +R TRE++ Q + D+ RG E+SPG   Q+D +L+ ++R++A T FH C TC+MG DEM+
Sbjct:  264 PQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDHLEMYLQYEC-KEPVSLYPALQWWNQPKIGAEWLFGGTGVGASNHFEAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSRGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGTECQTDEQLDEFVRNHAETAFHPCGTCKMGYDEMS 486          
BLAST of EY728614 vs. ExPASy Swiss-Prot
Match: BETA_ECO55 (Choline dehydrogenase OS=Escherichia coli (strain 55989 / EAEC) GN=betA PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.213e-41
Identity = 84/224 (37.50%), Postives = 131/224 (58.48%), Query Frame = -1
Query:    3 PAVVMLAGIGDPDELKPLGXELRHHCPGVGKXLQDHVPVAIQYSTPKQGVSPTRALSPLGRLFVGARWMAARSGLGASNYFEVGAFFRGNDQVEYANLEHEFLPMVGEFYRGKARITPGFQYFTSVMRPASRGSVTXASKDPKADPLIRLNFLTAPGDLEQLREGLRKTREMIAQRSWDELRGEELSPGKHLQSDAELEAWIRDNAGTTFHACSTCRMGVDEMA 674
            P ++  +G+G+ + L      L H  PGVG+ LQDH+ + +QY   K+ VS   AL    +  +GA W+   +G+GASN+FE G F R  ++  + N+++ FLP+   +    A    GFQ     MR  SRG V   S+DP   P I  N+++   D ++ R+ +R TRE++ Q + D+ RG E+SPG   Q+D +L+ ++R++A T FH C TC+MG DEM+
Sbjct:  264 PQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDHLEMYLQYEC-KEPVSLYPALQWWNQPKIGAEWLFGGTGVGASNHFEAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSRGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGTECQTDEQLDEFVRNHAETAFHPCGTCKMGYDEMS 486          
BLAST of EY728614 vs. ExPASy Swiss-Prot
Match: BETA_ECO24 (Choline dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=betA PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.213e-41
Identity = 84/224 (37.50%), Postives = 131/224 (58.48%), Query Frame = -1
Query:    3 PAVVMLAGIGDPDELKPLGXELRHHCPGVGKXLQDHVPVAIQYSTPKQGVSPTRALSPLGRLFVGARWMAARSGLGASNYFEVGAFFRGNDQVEYANLEHEFLPMVGEFYRGKARITPGFQYFTSVMRPASRGSVTXASKDPKADPLIRLNFLTAPGDLEQLREGLRKTREMIAQRSWDELRGEELSPGKHLQSDAELEAWIRDNAGTTFHACSTCRMGVDEMA 674
            P ++  +G+G+ + L      L H  PGVG+ LQDH+ + +QY   K+ VS   AL    +  +GA W+   +G+GASN+FE G F R  ++  + N+++ FLP+   +    A    GFQ     MR  SRG V   S+DP   P I  N+++   D ++ R+ +R TRE++ Q + D+ RG E+SPG   Q+D +L+ ++R++A T FH C TC+MG DEM+
Sbjct:  264 PQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDHLEMYLQYEC-KEPVSLYPALQWWNQPKIGAEWLFGGTGVGASNHFEAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSRGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGTECQTDEQLDEFVRNHAETAFHPCGTCKMGYDEMS 486          
The following BLAST results are available for this feature:
BLAST of EY728614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
BETA_ECO452.470e-4137.95Choline dehydrogenase OS=Escherichia coli O45:K1 (... [more]
BETA_XANCP3.226e-4139.73Choline dehydrogenase OS=Xanthomonas campestris pv... [more]
BETA_XANCB3.226e-4139.73Choline dehydrogenase OS=Xanthomonas campestris pv... [more]
BETA_XANC83.226e-4139.73Choline dehydrogenase OS=Xanthomonas campestris pv... [more]
BETA_ECOSE4.213e-4137.50Choline dehydrogenase OS=Escherichia coli (strain ... [more]
BETA_ECOLU4.213e-4137.95Choline dehydrogenase OS=Escherichia coli O17:K52:... [more]
BETA_ECOHS4.213e-4137.50Choline dehydrogenase OS=Escherichia coli O9:H4 (s... [more]
BETA_ECO8A4.213e-4137.50Choline dehydrogenase OS=Escherichia coli O8 (stra... [more]
BETA_ECO554.213e-4137.50Choline dehydrogenase OS=Escherichia coli (strain ... [more]
BETA_ECO244.213e-4137.50Choline dehydrogenase OS=Escherichia coli O139:H28... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-006-C05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728614 ID=EY728614; Name=EY728614; organism=Citrus sinensis; type=EST; length=782bp
ACCGCCATCTCGTCCACCCCCATGCGGCAGGTGGAACAGGCGTGGAAAGT
GGTGCCGGCGTTGTCGCGGATCCAGGCTTCCAGCTCGGCATCGCTCTGCA
GGTGCTTGCCGGGGCTGAGCTCCTCGCCGCGCAGTTCGTCCCAGGAGCGC
TGGGCGATCATTTCCCGGGTCTTGCGCAGGCCTTCGCGCAGTTGCTCCAG
GTCGCCCGGCGCGGTGAGGAAGTTCAGGCGGATCAGCGGATCGGCCTTGG
GATCCTTCGAGGCCANGGTGACGCTGCCACGACTGGCCGGGCGCATGACG
CTGGTGAAGTACTGGAAGCCCGGGGTGATGCGCGCCTTGCCGCGGTAGAA
CTCGCCCACCATGGGGAGAAATTCGTGCTCCAGGTTGGCGTACTCGACCT
GGTCGTTGCCACGGAAGAACGCCCCCACCTCGAAGTAGTTGGACGCCCCC
AGGCCACTGCGCGCGGCCATCCAGCGCGCCCCGACGAACAGCCGCCCGAG
CGGCGACAGCGCGCGGGTCGGCGACACACCCTGCTTGGGCGTCGAATACT
GGATCGCCACGGGCACGTGGTCCTGCAGGTNCTTGCCGACCCCGGGGCAG
TGGTGGCGCAGCTCNATGCCGAGGGGCTTGAGCTCGTCCGGATCACCGAT
GCCGGCGAGCATCACAACTGCCGGGAACCGGAGGGACCGGACTGAGGATC
CTTGCTTGGCGGCAGGATGGATTGTCCAGGCATTGACTTTGTATTTCACC
CTAACGCCTCCTTGCCGAAAAAACCACCCGCC
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