EY728581

Overview
NameEY728581
Unique NameEY728581
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length403
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11600 contig Csv1_Contig11600:39..441. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY728581 vs. ExPASy Swiss-Prot
Match: HIS6_CELJU (Imidazole glycerol phosphate synthase subunit hisF OS=Cellvibrio japonicus (strain Ueda107) GN=hisF PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 5.363e-57
Identity = 106/134 (79.10%), Postives = 123/134 (91.79%), Query Frame = 1
Query:    1 NGRVVKGVKFENIRDAGDPVEIARRYDEQGADEITFLDITASVDGRDTTLHTVERMASQVFIPLTVGGGVRTVQDIRNLLNAGADKVSINTAAVFNPEFVGEAAQHFGSQCIVVAIDAKKVSGPGETPRWEIFT 402
            NGRVVKGVKF +IRDAGDPVEIA+RY+++GADEITFLDITA+ +GRDTT+HTVE++AS+VFIPLTVGGG+RTV DIR +LNAGADKVSIN+AAVFNP+FV  A+  FG+QCIVVAIDAKKVS  GE PRWEIFT
Sbjct:   15 NGRVVKGVKFLDIRDAGDPVEIAKRYNQEGADEITFLDITATHEGRDTTVHTVEKIASEVFIPLTVGGGIRTVDDIRTMLNAGADKVSINSAAVFNPDFVKAASDRFGAQCIVVAIDAKKVSAEGEMPRWEIFT 148          
BLAST of EY728581 vs. ExPASy Swiss-Prot
Match: HIS6_MARMS (Imidazole glycerol phosphate synthase subunit hisF OS=Marinomonas sp. (strain MWYL1) GN=hisF PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 7.004e-57
Identity = 108/134 (80.60%), Postives = 120/134 (89.55%), Query Frame = 1
Query:    1 NGRVVKGVKFENIRDAGDPVEIARRYDEQGADEITFLDITASVDGRDTTLHTVERMASQVFIPLTVGGGVRTVQDIRNLLNAGADKVSINTAAVFNPEFVGEAAQHFGSQCIVVAIDAKKVSGPGETPRWEIFT 402
            NGRVVKGV+F +IRDAGDPVE+A+RY+EQGADEITFLDITAS D R+TT+H VE +ASQVFIPLTVGGG+RT +DIR +LNAGADKV INTAAVFNPEFV EAAQ FGSQCIVVAIDAKKVS  GE  +WEIFT
Sbjct:   15 NGRVVKGVQFVDIRDAGDPVEVAKRYNEQGADEITFLDITASSDDRETTVHMVEAIASQVFIPLTVGGGIRTCEDIRRMLNAGADKVGINTAAVFNPEFVREAAQRFGSQCIVVAIDAKKVSAEGEPDKWEIFT 148          
BLAST of EY728581 vs. ExPASy Swiss-Prot
Match: HIS6_THISH (Imidazole glycerol phosphate synthase subunit hisF OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=hisF PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 1.725e-55
Identity = 106/134 (79.10%), Postives = 118/134 (88.06%), Query Frame = 1
Query:    1 NGRVVKGVKFENIRDAGDPVEIARRYDEQGADEITFLDITASVDGRDTTLHTVERMASQVFIPLTVGGGVRTVQDIRNLLNAGADKVSINTAAVFNPEFVGEAAQHFGSQCIVVAIDAKKVSGPGETPRWEIFT 402
            NGRVVKGV F  IRDAGDPVEIARRYD +GADEITFLDITAS D R+T +H VE++A++VFIPLTVGGG+R ++DIR LLNAGADKVSINTAAVFNP+FV EAA   GSQCIVVAIDAK+VSGPGE  RWEIFT
Sbjct:   14 NGRVVKGVNFVEIRDAGDPVEIARRYDAEGADEITFLDITASHDERETMVHVVEQVATEVFIPLTVGGGIRRMEDIRRLLNAGADKVSINTAAVFNPDFVREAADKVGSQCIVVAIDAKRVSGPGEADRWEIFT 147          
BLAST of EY728581 vs. ExPASy Swiss-Prot
Match: HIS6_ALCBS (Imidazole glycerol phosphate synthase subunit hisF OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=hisF PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 3.843e-55
Identity = 107/133 (80.45%), Postives = 120/133 (90.23%), Query Frame = 1
Query:    4 GRVVKGVKFENIRDAGDPVEIARRYDEQGADEITFLDITASVDGRDTTLHTVERMASQVFIPLTVGGGVRTVQDIRNLLNAGADKVSINTAAVFNPEFVGEAAQHFGSQCIVVAIDAKKVSGPGETPRWEIFT 402
            GRVVKGV+F +IRDAGDPVEIA+RY++ GADEITFLDITAS   RDTTLHTVE++ASQVFIPLTVGGGVR ++DIRNLLNAGADKV+IN+AAV NPEFV EAA+ FGSQCIVVAIDAKKVS   +T RWEIFT
Sbjct:   16 GRVVKGVQFVDIRDAGDPVEIAKRYNDAGADEITFLDITASHQERDTTLHTVEQIASQVFIPLTVGGGVRALEDIRNLLNAGADKVAINSAAVHNPEFVREAAERFGSQCIVVAIDAKKVSAESDTNRWEIFT 148          
BLAST of EY728581 vs. ExPASy Swiss-Prot
Match: HIS6_SACD2 (Imidazole glycerol phosphate synthase subunit hisF OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=hisF PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 6.555e-55
Identity = 103/133 (77.44%), Postives = 123/133 (92.48%), Query Frame = 1
Query:    4 GRVVKGVKFENIRDAGDPVEIARRYDEQGADEITFLDITASVDGRDTTLHTVERMASQVFIPLTVGGGVRTVQDIRNLLNAGADKVSINTAAVFNPEFVGEAAQHFGSQCIVVAIDAKKVSGPGETPRWEIFT 402
            GRVVKGV+F +IRDAGDPVE+A++Y+EQGADEITFLDITASV+GR+TT+ TVE++A++VFIPLTVGGG+RT++DIR +LNAGADKVSIN+AAV +PEFV  AA+ FGSQCIVVAIDAKKVS  GE PRWEIFT
Sbjct:   16 GRVVKGVQFVDIRDAGDPVEVAKKYNEQGADEITFLDITASVEGRETTVQTVEKIAAEVFIPLTVGGGIRTLEDIRTMLNAGADKVSINSAAVKDPEFVKAAAEGFGSQCIVVAIDAKKVSAEGEPPRWEIFT 148          
BLAST of EY728581 vs. ExPASy Swiss-Prot
Match: HIS6_CUPTR (Imidazole glycerol phosphate synthase subunit hisF OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=hisF PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 8.562e-55
Identity = 100/134 (74.63%), Postives = 116/134 (86.57%), Query Frame = 1
Query:    1 NGRVVKGVKFENIRDAGDPVEIARRYDEQGADEITFLDITASVDGRDTTLHTVERMASQVFIPLTVGGGVRTVQDIRNLLNAGADKVSINTAAVFNPEFVGEAAQHFGSQCIVVAIDAKKVSGPGETPRWEIFT 402
            NGRVVKGV F  +RDAGDPVEIARRYDEQGADEITFLDITA+ DGRD  LH +E +ASQVFIPLTVGGGVRTV+D+R LLNAGADK+S+N++A+ NP+ V +A   +GSQCIVVAIDAK+ S PGE PRWE+FT
Sbjct:   14 NGRVVKGVNFVELRDAGDPVEIARRYDEQGADEITFLDITATSDGRDLMLHIIEDVASQVFIPLTVGGGVRTVEDVRRLLNAGADKISVNSSAIANPQLVSDATARYGSQCIVVAIDAKRSSAPGEAPRWEVFT 147          
BLAST of EY728581 vs. ExPASy Swiss-Prot
Match: HIS6_RALEH (Imidazole glycerol phosphate synthase subunit hisF OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=hisF PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 1.118e-54
Identity = 100/134 (74.63%), Postives = 116/134 (86.57%), Query Frame = 1
Query:    1 NGRVVKGVKFENIRDAGDPVEIARRYDEQGADEITFLDITASVDGRDTTLHTVERMASQVFIPLTVGGGVRTVQDIRNLLNAGADKVSINTAAVFNPEFVGEAAQHFGSQCIVVAIDAKKVSGPGETPRWEIFT 402
            NGRVVKGV F  +RDAGDPVEIARRYDEQGADEITFLDITA+ DGRD  LH +E +ASQVFIPLTVGGGVRTV+D+R LLNAGADK+S+N++A+ NP+ V +A   +GSQCIVVAIDAK+ S PGE PRWE+FT
Sbjct:   14 NGRVVKGVNFVELRDAGDPVEIARRYDEQGADEITFLDITATSDGRDLMLHIIEDVASQVFIPLTVGGGVRTVEDVRRLLNAGADKISVNSSAIANPQLVSDATAKYGSQCIVVAIDAKRSSAPGEAPRWEVFT 147          
BLAST of EY728581 vs. ExPASy Swiss-Prot
Match: HIS6_RALME (Imidazole glycerol phosphate synthase subunit hisF OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=hisF PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 1.460e-54
Identity = 100/134 (74.63%), Postives = 116/134 (86.57%), Query Frame = 1
Query:    1 NGRVVKGVKFENIRDAGDPVEIARRYDEQGADEITFLDITASVDGRDTTLHTVERMASQVFIPLTVGGGVRTVQDIRNLLNAGADKVSINTAAVFNPEFVGEAAQHFGSQCIVVAIDAKKVSGPGETPRWEIFT 402
            NGRVVKGV F  +RDAGDPVEIARRYDEQGADEITFLDITA+ DGRD  LH +E +ASQVFIPLTVGGGVRTV+D+R LLNAGADK+S+N++A+ NP+ V +A   +GSQCIVVAIDAK+ S PGE PRWE+FT
Sbjct:   14 NGRVVKGVNFVELRDAGDPVEIARRYDEQGADEITFLDITATSDGRDLILHIIEAVASQVFIPLTVGGGVRTVEDVRRLLNAGADKISVNSSAIANPQLVSDATGKYGSQCIVVAIDAKRSSAPGEPPRWEVFT 147          
BLAST of EY728581 vs. ExPASy Swiss-Prot
Match: HIS6_CHRSD (Imidazole glycerol phosphate synthase subunit hisF OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=hisF PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 1.907e-54
Identity = 104/133 (78.20%), Postives = 117/133 (87.97%), Query Frame = 1
Query:    4 GRVVKGVKFENIRDAGDPVEIARRYDEQGADEITFLDITASVDGRDTTLHTVERMASQVFIPLTVGGGVRTVQDIRNLLNAGADKVSINTAAVFNPEFVGEAAQHFGSQCIVVAIDAKKVSGPGETPRWEIFT 402
            GRVVKGV F  IRDAGDPVE+A+RY++QGADEITFLDITASV+ R TT+  VER+A +VFIPLTVGGG+RT  DIR +LNAGADKVSINTAAV +PEFV EAA+ FGSQCIVVAIDAK+VS  GETPRWEIFT
Sbjct:   16 GRVVKGVNFVGIRDAGDPVEVAKRYNQQGADEITFLDITASVEDRGTTVEMVERIAGEVFIPLTVGGGIRTCDDIRTMLNAGADKVSINTAAVTHPEFVHEAAERFGSQCIVVAIDAKRVSAEGETPRWEIFT 148          
BLAST of EY728581 vs. ExPASy Swiss-Prot
Match: HIS6_RALEJ (Imidazole glycerol phosphate synthase subunit hisF OS=Ralstonia eutropha (strain JMP134) GN=hisF PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 5.549e-54
Identity = 99/134 (73.88%), Postives = 115/134 (85.82%), Query Frame = 1
Query:    1 NGRVVKGVKFENIRDAGDPVEIARRYDEQGADEITFLDITASVDGRDTTLHTVERMASQVFIPLTVGGGVRTVQDIRNLLNAGADKVSINTAAVFNPEFVGEAAQHFGSQCIVVAIDAKKVSGPGETPRWEIFT 402
            NGRVVKGV F  +RDAGDPVEIARRYDEQGADEITFLDITA+ DGRD  LH +E +ASQVFIPLTVGGGVR V+D+R LLNAGADK+S+N++A+ NP+ V +A   +GSQCIVVAIDAK+ S PGE PRWE+FT
Sbjct:   14 NGRVVKGVNFVELRDAGDPVEIARRYDEQGADEITFLDITATSDGRDLILHIIEAVASQVFIPLTVGGGVRAVEDVRRLLNAGADKISVNSSAIANPQLVSDATGKYGSQCIVVAIDAKRSSAPGEPPRWEVFT 147          
The following BLAST results are available for this feature:
BLAST of EY728581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HIS6_CELJU5.363e-5779.10Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_MARMS7.004e-5780.60Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_THISH1.725e-5579.10Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_ALCBS3.843e-5580.45Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_SACD26.555e-5577.44Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_CUPTR8.562e-5574.63Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_RALEH1.118e-5474.63Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_RALME1.460e-5474.63Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_CHRSD1.907e-5478.20Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_RALEJ5.549e-5473.88Imidazole glycerol phosphate synthase subunit hisF... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-005-G08-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728581 ID=EY728581; Name=EY728581; organism=Citrus sinensis; type=EST; length=403bp
AACGGTCGCGTGGTCAAGGGCGTCAAGTTCGAGAACATCCGTGACGCGGG
CGACCCGGTGGAAATCGCCCGTCGCTACGACGAACAGGGCGCTGACGAGA
TTACCTTTCTCGACATCACCGCCAGTGTCGATGGTCGCGACACCACGCTG
CATACCGTCGAGCGCATGGCCAGCCAGGTGTTTATCCCGCTGACCGTGGG
CGGTGGCGTGCGCACCGTGCAGGACATTCGCAACCTGCTGAATGCCGGCG
CGGACAAGGTATCGATCAACACTGCCGCCGTGTTCAACCCGGAGTTTGTC
GGCGAAGCCGCACAGCACTTCGGTTCGCAATGCATCGTCGTCGCCATCGA
CGCCAAGAAAGTCTCCGGTCCGGGCGAAACCCCGCGCTGGGAGATCTTCA
CCC
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