EY728581

Overview
NameEY728581
Unique NameEY728581
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length403
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11600 contig Csv1_Contig11600:39..441. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY728581 vs. ExPASy Swiss-Prot
Match: HIS6_TERTT (Imidazole glycerol phosphate synthase subunit hisF OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=hisF PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 3.045e-52
Identity = 99/133 (74.44%), Postives = 121/133 (90.98%), Query Frame = 1
Query:    4 GRVVKGVKFENIRDAGDPVEIARRYDEQGADEITFLDITASVDGRDTTLHTVERMASQVFIPLTVGGGVRTVQDIRNLLNAGADKVSINTAAVFNPEFVGEAAQHFGSQCIVVAIDAKKVSGPGETPRWEIFT 402
            GRVVKGV+F +IRDAGDPVE+A++Y+EQGADEITFLDITAS + R+TT++TVE++A++VFIPLTVGGG+RT+ DIRN+LNAGADKVSIN+AAV +P+FV  AA+ FGSQCIVVAIDAK+VS  GE  RWEIFT
Sbjct:   16 GRVVKGVQFVDIRDAGDPVEVAKKYNEQGADEITFLDITASHEARETTINTVEKIAAEVFIPLTVGGGIRTLDDIRNMLNAGADKVSINSAAVKDPDFVRIAAEKFGSQCIVVAIDAKRVSADGEPGRWEIFT 148          
BLAST of EY728581 vs. ExPASy Swiss-Prot
Match: HIS6_RALPJ (Imidazole glycerol phosphate synthase subunit hisF OS=Ralstonia pickettii (strain 12J) GN=hisF PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 3.977e-52
Identity = 98/134 (73.13%), Postives = 114/134 (85.07%), Query Frame = 1
Query:    1 NGRVVKGVKFENIRDAGDPVEIARRYDEQGADEITFLDITASVDGRDTTLHTVERMASQVFIPLTVGGGVRTVQDIRNLLNAGADKVSINTAAVFNPEFVGEAAQHFGSQCIVVAIDAKKVSGPGETPRWEIFT 402
            NGRVVKGV F  +RDAGDPVEIARRYDEQGADEITFLDITA+ DGRD  L  +E +ASQVFIPLTVGGGVR ++D+R LLNAGADK+S+N++AV NP+ V +A+   G+QCIVVAIDAKKVS  GE PRWE+FT
Sbjct:   14 NGRVVKGVNFVELRDAGDPVEIARRYDEQGADEITFLDITATSDGRDLMLGIIEAVASQVFIPLTVGGGVRALEDVRRLLNAGADKISMNSSAVANPQLVSDASARHGAQCIVVAIDAKKVSAEGEAPRWEVFT 147          
BLAST of EY728581 vs. ExPASy Swiss-Prot
Match: HIS6_PSYWF (Imidazole glycerol phosphate synthase subunit hisF OS=Psychrobacter sp. (strain PRwf-1) GN=hisF PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 3.977e-52
Identity = 101/134 (75.37%), Postives = 115/134 (85.82%), Query Frame = 1
Query:    1 NGRVVKGVKFENIRDAGDPVEIARRYDEQGADEITFLDITASVDGRDTTLHTVERMASQVFIPLTVGGGVRTVQDIRNLLNAGADKVSINTAAVFNPEFVGEAAQHFGSQCIVVAIDAKKVSGPGETPRWEIFT 402
            NGRVVKGV+F +I+DAGDPVE+ARRY+EQGADEITFLDITA+  GR+TT   VER+A  VF+PLTVGGGVR ++DIRNLLNAGADKV+IN+AAVF PEFV EAA  FGSQCIVVAIDAK+V      PRWEIFT
Sbjct:   14 NGRVVKGVQFVDIKDAGDPVEVARRYNEQGADEITFLDITATHHGRETTYDMVERIAETVFVPLTVGGGVRKIEDIRNLLNAGADKVAINSAAVFTPEFVAEAAAKFGSQCIVVAIDAKQVEDVEGQPRWEIFT 147          
BLAST of EY728581 vs. ExPASy Swiss-Prot
Match: HIS6_BURTA (Imidazole glycerol phosphate synthase subunit hisF OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=hisF PE=3 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 8.860e-52
Identity = 98/133 (73.68%), Postives = 114/133 (85.71%), Query Frame = 1
Query:    4 GRVVKGVKFENIRDAGDPVEIARRYDEQGADEITFLDITASVDGRDTTLHTVERMASQVFIPLTVGGGVRTVQDIRNLLNAGADKVSINTAAVFNPEFVGEAAQHFGSQCIVVAIDAKKVSGPGETPRWEIFT 402
            GRVVKGV F  +RDAGDPVEIARRYD+QGADE+TFLDITA+ DGRD  L  +E +ASQVFIPLTVGGGVR V+D+R LLNAGADKVS+N++AV NP+ V +AA  +GSQCIVVAIDAK+VS  GE PRWE+FT
Sbjct:   16 GRVVKGVNFVELRDAGDPVEIARRYDDQGADELTFLDITATSDGRDLILPIIEAVASQVFIPLTVGGGVRAVEDVRRLLNAGADKVSMNSSAVANPQLVRDAADKYGSQCIVVAIDAKRVSAEGEPPRWEVFT 148          
BLAST of EY728581 vs. ExPASy Swiss-Prot
Match: HIS6_BURVG (Imidazole glycerol phosphate synthase subunit hisF OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=hisF PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 1.511e-51
Identity = 98/133 (73.68%), Postives = 113/133 (84.96%), Query Frame = 1
Query:    4 GRVVKGVKFENIRDAGDPVEIARRYDEQGADEITFLDITASVDGRDTTLHTVERMASQVFIPLTVGGGVRTVQDIRNLLNAGADKVSINTAAVFNPEFVGEAAQHFGSQCIVVAIDAKKVSGPGETPRWEIFT 402
            GRVVKGV F  +RDAGDPVEIARRYDEQGADE+TFLDITA+ D RD  L  +E +ASQVFIPLTVGGGVR V+D+R LLNAGADKVS+N++AV NP+ V +AA  +GSQCIVVAIDAK+VS P E PRWE+FT
Sbjct:   16 GRVVKGVNFVELRDAGDPVEIARRYDEQGADELTFLDITATSDQRDLILPIIEAVASQVFIPLTVGGGVRAVEDVRRLLNAGADKVSMNSSAVANPQLVRDAADKYGSQCIVVAIDAKRVSAPNEAPRWEVFT 148          
BLAST of EY728581 vs. ExPASy Swiss-Prot
Match: HIS6_BURS3 (Imidazole glycerol phosphate synthase subunit hisF OS=Burkholderia sp. (strain 383) GN=hisF PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 1.511e-51
Identity = 98/133 (73.68%), Postives = 114/133 (85.71%), Query Frame = 1
Query:    4 GRVVKGVKFENIRDAGDPVEIARRYDEQGADEITFLDITASVDGRDTTLHTVERMASQVFIPLTVGGGVRTVQDIRNLLNAGADKVSINTAAVFNPEFVGEAAQHFGSQCIVVAIDAKKVSGPGETPRWEIFT 402
            GRVVKGV F  +RDAGDPVEIARRYD+QGADE+TFLDITA+ D RD  L  +E +ASQVFIPLTVGGGVR V+D+R LLNAGADKVS+N++AV NP+ V +AA  +GSQCIVVAIDAK+VS  GETPRWE+FT
Sbjct:   16 GRVVKGVNFVELRDAGDPVEIARRYDDQGADELTFLDITATSDQRDLILPIIEAVASQVFIPLTVGGGVRAVEDVRRLLNAGADKVSMNSSAVANPQLVRDAADKYGSQCIVVAIDAKRVSADGETPRWEVFT 148          
BLAST of EY728581 vs. ExPASy Swiss-Prot
Match: HIS6_BURCM (Imidazole glycerol phosphate synthase subunit hisF OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=hisF PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 1.511e-51
Identity = 98/133 (73.68%), Postives = 114/133 (85.71%), Query Frame = 1
Query:    4 GRVVKGVKFENIRDAGDPVEIARRYDEQGADEITFLDITASVDGRDTTLHTVERMASQVFIPLTVGGGVRTVQDIRNLLNAGADKVSINTAAVFNPEFVGEAAQHFGSQCIVVAIDAKKVSGPGETPRWEIFT 402
            GRVVKGV F  +RDAGDPVEIARRYD+QGADE+TFLDITA+ D RD  L  +E +ASQVFIPLTVGGGVR V+D+R LLNAGADKVS+N++AV NP+ V +AA  +GSQCIVVAIDAK+VS  GETPRWE+FT
Sbjct:   16 GRVVKGVNFVELRDAGDPVEIARRYDDQGADELTFLDITATSDQRDLILPIIEAVASQVFIPLTVGGGVRAVEDVRRLLNAGADKVSMNSSAVANPQLVRDAADKYGSQCIVVAIDAKRVSADGETPRWEVFT 148          
BLAST of EY728581 vs. ExPASy Swiss-Prot
Match: HIS6_BURCH (Imidazole glycerol phosphate synthase subunit hisF OS=Burkholderia cenocepacia (strain HI2424) GN=hisF PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 1.511e-51
Identity = 98/133 (73.68%), Postives = 114/133 (85.71%), Query Frame = 1
Query:    4 GRVVKGVKFENIRDAGDPVEIARRYDEQGADEITFLDITASVDGRDTTLHTVERMASQVFIPLTVGGGVRTVQDIRNLLNAGADKVSINTAAVFNPEFVGEAAQHFGSQCIVVAIDAKKVSGPGETPRWEIFT 402
            GRVVKGV F  +RDAGDPVEIARRYD+QGADE+TFLDITA+ D RD  L  +E +ASQVFIPLTVGGGVR V+D+R LLNAGADKVS+N++AV NP+ V +AA  +GSQCIVVAIDAK+VS  GETPRWE+FT
Sbjct:   16 GRVVKGVNFVELRDAGDPVEIARRYDDQGADELTFLDITATSDQRDLILPIIEAVASQVFIPLTVGGGVRAVEDVRRLLNAGADKVSMNSSAVANPQLVRDAADKYGSQCIVVAIDAKRVSADGETPRWEVFT 148          
BLAST of EY728581 vs. ExPASy Swiss-Prot
Match: HIS6_BURCC (Imidazole glycerol phosphate synthase subunit hisF OS=Burkholderia cenocepacia (strain MC0-3) GN=hisF PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 1.511e-51
Identity = 98/133 (73.68%), Postives = 114/133 (85.71%), Query Frame = 1
Query:    4 GRVVKGVKFENIRDAGDPVEIARRYDEQGADEITFLDITASVDGRDTTLHTVERMASQVFIPLTVGGGVRTVQDIRNLLNAGADKVSINTAAVFNPEFVGEAAQHFGSQCIVVAIDAKKVSGPGETPRWEIFT 402
            GRVVKGV F  +RDAGDPVEIARRYD+QGADE+TFLDITA+ D RD  L  +E +ASQVFIPLTVGGGVR V+D+R LLNAGADKVS+N++AV NP+ V +AA  +GSQCIVVAIDAK+VS  GETPRWE+FT
Sbjct:   16 GRVVKGVNFVELRDAGDPVEIARRYDDQGADELTFLDITATSDQRDLILPIIEAVASQVFIPLTVGGGVRAVEDVRRLLNAGADKVSMNSSAVANPQLVRDAADKYGSQCIVVAIDAKRVSADGETPRWEVFT 148          
BLAST of EY728581 vs. ExPASy Swiss-Prot
Match: HIS6_BURCA (Imidazole glycerol phosphate synthase subunit hisF OS=Burkholderia cenocepacia (strain AU 1054) GN=hisF PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 1.511e-51
Identity = 98/133 (73.68%), Postives = 114/133 (85.71%), Query Frame = 1
Query:    4 GRVVKGVKFENIRDAGDPVEIARRYDEQGADEITFLDITASVDGRDTTLHTVERMASQVFIPLTVGGGVRTVQDIRNLLNAGADKVSINTAAVFNPEFVGEAAQHFGSQCIVVAIDAKKVSGPGETPRWEIFT 402
            GRVVKGV F  +RDAGDPVEIARRYD+QGADE+TFLDITA+ D RD  L  +E +ASQVFIPLTVGGGVR V+D+R LLNAGADKVS+N++AV NP+ V +AA  +GSQCIVVAIDAK+VS  GETPRWE+FT
Sbjct:   16 GRVVKGVNFVELRDAGDPVEIARRYDDQGADELTFLDITATSDQRDLILPIIEAVASQVFIPLTVGGGVRAVEDVRRLLNAGADKVSMNSSAVANPQLVRDAADKYGSQCIVVAIDAKRVSADGETPRWEVFT 148          
The following BLAST results are available for this feature:
BLAST of EY728581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HIS6_TERTT3.045e-5274.44Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_RALPJ3.977e-5273.13Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_PSYWF3.977e-5275.37Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_BURTA8.860e-5273.68Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_BURVG1.511e-5173.68Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_BURS31.511e-5173.68Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_BURCM1.511e-5173.68Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_BURCH1.511e-5173.68Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_BURCC1.511e-5173.68Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_BURCA1.511e-5173.68Imidazole glycerol phosphate synthase subunit hisF... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-005-G08-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728581 ID=EY728581; Name=EY728581; organism=Citrus sinensis; type=EST; length=403bp
AACGGTCGCGTGGTCAAGGGCGTCAAGTTCGAGAACATCCGTGACGCGGG
CGACCCGGTGGAAATCGCCCGTCGCTACGACGAACAGGGCGCTGACGAGA
TTACCTTTCTCGACATCACCGCCAGTGTCGATGGTCGCGACACCACGCTG
CATACCGTCGAGCGCATGGCCAGCCAGGTGTTTATCCCGCTGACCGTGGG
CGGTGGCGTGCGCACCGTGCAGGACATTCGCAACCTGCTGAATGCCGGCG
CGGACAAGGTATCGATCAACACTGCCGCCGTGTTCAACCCGGAGTTTGTC
GGCGAAGCCGCACAGCACTTCGGTTCGCAATGCATCGTCGTCGCCATCGA
CGCCAAGAAAGTCTCCGGTCCGGGCGAAACCCCGCGCTGGGAGATCTTCA
CCC
back to top