EY728566

Overview
NameEY728566
Unique NameEY728566
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length881
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728566 vs. ExPASy Swiss-Prot
Match: AAEA_ECO55 (p-hydroxybenzoic acid efflux pump subunit aaeA OS=Escherichia coli (strain 55989 / EAEC) GN=aaeA PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.242e-12
Identity = 32/80 (40.00%), Postives = 50/80 (62.50%), Query Frame = 3
Query:    3 SSFYVEGYFEETKLPGIHEGAPVTVTLMGDNRQIRGHVESIALGIADRERGTGANLLANVNPTFNWVRLAQRIPVRVKID 242
            +SFYV  Y EETKL G+  G    +T +G N+ ++G V+S+A G+ +         +A ++    WVRLAQR+PVR+++D
Sbjct:  189 NSFYVLAYMEETKLEGVRPGYRAEITPLGSNKVLKGTVDSVAAGVTNASSTRDDKGMATIDSNLEWVRLAQRVPVRIRLD 268          
BLAST of EY728566 vs. ExPASy Swiss-Prot
Match: AAEA_ECO45 (p-hydroxybenzoic acid efflux pump subunit aaeA OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=aaeA PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.242e-12
Identity = 32/80 (40.00%), Postives = 50/80 (62.50%), Query Frame = 3
Query:    3 SSFYVEGYFEETKLPGIHEGAPVTVTLMGDNRQIRGHVESIALGIADRERGTGANLLANVNPTFNWVRLAQRIPVRVKID 242
            +SFYV  Y EETKL G+  G    +T +G N+ ++G V+S+A G+ +         +A ++    WVRLAQR+PVR+++D
Sbjct:  189 NSFYVLAYMEETKLEGVRPGYRAEITPLGSNKVLKGTVDSVAAGVTNASSTRDDKGMATIDSNLEWVRLAQRVPVRIRLD 268          
BLAST of EY728566 vs. ExPASy Swiss-Prot
Match: AAEA_ECO27 (p-hydroxybenzoic acid efflux pump subunit aaeA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=aaeA PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.242e-12
Identity = 32/80 (40.00%), Postives = 50/80 (62.50%), Query Frame = 3
Query:    3 SSFYVEGYFEETKLPGIHEGAPVTVTLMGDNRQIRGHVESIALGIADRERGTGANLLANVNPTFNWVRLAQRIPVRVKID 242
            +SFYV  Y EETKL G+  G    +T +G N+ ++G V+S+A G+ +         +A ++    WVRLAQR+PVR+++D
Sbjct:  189 NSFYVLAYMEETKLEGVRPGYRAEITPLGSNKVLKGTVDSVAAGVTNASSTRDDKGMATIDSNLEWVRLAQRVPVRIRLD 268          
BLAST of EY728566 vs. ExPASy Swiss-Prot
Match: AAEA_ECO24 (p-hydroxybenzoic acid efflux pump subunit aaeA OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=aaeA PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.242e-12
Identity = 32/80 (40.00%), Postives = 50/80 (62.50%), Query Frame = 3
Query:    3 SSFYVEGYFEETKLPGIHEGAPVTVTLMGDNRQIRGHVESIALGIADRERGTGANLLANVNPTFNWVRLAQRIPVRVKID 242
            +SFYV  Y EETKL G+  G    +T +G N+ ++G V+S+A G+ +         +A ++    WVRLAQR+PVR+++D
Sbjct:  189 NSFYVLAYMEETKLEGVRPGYRAEITPLGSNKVLKGTVDSVAAGVTNASSTRDDKGMATIDSNLEWVRLAQRVPVRIRLD 268          
BLAST of EY728566 vs. ExPASy Swiss-Prot
Match: AAEA_SHIFL (p-hydroxybenzoic acid efflux pump subunit aaeA OS=Shigella flexneri GN=aaeA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.928e-12
Identity = 32/80 (40.00%), Postives = 50/80 (62.50%), Query Frame = 3
Query:    3 SSFYVEGYFEETKLPGIHEGAPVTVTLMGDNRQIRGHVESIALGIADRERGTGANLLANVNPTFNWVRLAQRIPVRVKID 242
            +SFYV  Y EETKL G+  G    +T +G N+ ++G V+S+A G+ +         +A ++    WVRLAQR+PVR+++D
Sbjct:  189 NSFYVLAYMEETKLEGVRPGYRAEITPLGSNKVLKGTVDSVAAGVTNASSTRDDKGMATIDSDLEWVRLAQRVPVRIRLD 268          
BLAST of EY728566 vs. ExPASy Swiss-Prot
Match: AAEA_YERE8 (p-hydroxybenzoic acid efflux pump subunit aaeA OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=aaeA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.523e-12
Identity = 31/79 (39.24%), Postives = 49/79 (62.03%), Query Frame = 3
Query:    6 SFYVEGYFEETKLPGIHEGAPVTVTLMGDNRQIRGHVESIALGIADRERGTGANLLANVNPTFNWVRLAQRIPVRVKID 242
            +FY+  Y EETKL G+  G    +T +G NR + G V+SI+ G+ +      +  LA ++    WVRLAQR+PV++++D
Sbjct:  190 TFYILAYLEETKLEGVKPGHRAEITPLGSNRILHGTVDSISAGVTNSSSSADSKGLATIDNNLEWVRLAQRVPVKIRLD 268          
BLAST of EY728566 vs. ExPASy Swiss-Prot
Match: AAEA_ERWCT (p-hydroxybenzoic acid efflux pump subunit aaeA OS=Erwinia carotovora subsp. atroseptica GN=aaeA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.523e-12
Identity = 33/79 (41.77%), Postives = 47/79 (59.49%), Query Frame = 3
Query:    6 SFYVEGYFEETKLPGIHEGAPVTVTLMGDNRQIRGHVESIALGIADRERGTGANLLANVNPTFNWVRLAQRIPVRVKID 242
            SFY+  Y EETKL G+  G    +T +G  +   G V+S+A GI +         LANV+    WVRLAQR+PV++++D
Sbjct:  201 SFYLLAYMEETKLEGVRRGYRAEITPLGSEKIFYGTVDSVAAGINNSSNSANTKGLANVDSNLEWVRLAQRVPVKIRLD 279          
BLAST of EY728566 vs. ExPASy Swiss-Prot
Match: AAEA_ECO8A (p-hydroxybenzoic acid efflux pump subunit aaeA OS=Escherichia coli O8 (strain IAI1) GN=aaeA PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.519e-12
Identity = 32/80 (40.00%), Postives = 49/80 (61.25%), Query Frame = 3
Query:    3 SSFYVEGYFEETKLPGIHEGAPVTVTLMGDNRQIRGHVESIALGIADRERGTGANLLANVNPTFNWVRLAQRIPVRVKID 242
            +SFYV  Y EETKL G+  G    +T +G N+ ++G V+S+A G+ +         +A ++    WVRLAQR+PVR+ +D
Sbjct:  189 NSFYVLAYMEETKLEGVRPGYRAEITPLGSNKVLKGTVDSVAAGVTNASSTRDDKGMATIDSNLEWVRLAQRVPVRICLD 268          
BLAST of EY728566 vs. ExPASy Swiss-Prot
Match: AAEA_SERP5 (p-hydroxybenzoic acid efflux pump subunit aaeA OS=Serratia proteamaculans (strain 568) GN=aaeA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.113e-11
Identity = 31/81 (38.27%), Postives = 52/81 (64.20%), Query Frame = 3
Query:    3 SSFYVEGYFEETKLPGIHEGAPVTVTLMGDNRQIRGHVESIALGIADRERGTGANLLANVNPTFNWVRLAQRIPVRVKIDE 245
            +SFY+  Y EETKL G+++G    +T +G NR + G V+S+A  + +      +  LA+++    WVRLAQR+PV++ +D+
Sbjct:  189 NSFYILAYLEETKLNGLNKGDRAEITPLGSNRIMHGTVDSVAAAVNNSSSTVNSKGLASIDSNLEWVRLAQRVPVKILLDD 269          
BLAST of EY728566 vs. ExPASy Swiss-Prot
Match: AAEA_YERPY (p-hydroxybenzoic acid efflux pump subunit aaeA OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=aaeA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.453e-11
Identity = 31/79 (39.24%), Postives = 48/79 (60.76%), Query Frame = 3
Query:    6 SFYVEGYFEETKLPGIHEGAPVTVTLMGDNRQIRGHVESIALGIADRERGTGANLLANVNPTFNWVRLAQRIPVRVKID 242
            +FY+  Y EETKL G+  G    +T +G NR + G V+SI+ G+ +      +  LA ++    WVRLAQR+PV++ +D
Sbjct:  190 TFYILAYLEETKLEGVKPGYRAEITPLGSNRILHGTVDSISAGVTNSSSSADSKGLATIDNNLEWVRLAQRVPVKIHLD 268          
The following BLAST results are available for this feature:
BLAST of EY728566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
AAEA_ECO552.242e-1240.00p-hydroxybenzoic acid efflux pump subunit aaeA OS=... [more]
AAEA_ECO452.242e-1240.00p-hydroxybenzoic acid efflux pump subunit aaeA OS=... [more]
AAEA_ECO272.242e-1240.00p-hydroxybenzoic acid efflux pump subunit aaeA OS=... [more]
AAEA_ECO242.242e-1240.00p-hydroxybenzoic acid efflux pump subunit aaeA OS=... [more]
AAEA_SHIFL2.928e-1240.00p-hydroxybenzoic acid efflux pump subunit aaeA OS=... [more]
AAEA_YERE86.523e-1239.24p-hydroxybenzoic acid efflux pump subunit aaeA OS=... [more]
AAEA_ERWCT6.523e-1241.77p-hydroxybenzoic acid efflux pump subunit aaeA OS=... [more]
AAEA_ECO8A8.519e-1240.00p-hydroxybenzoic acid efflux pump subunit aaeA OS=... [more]
AAEA_SERP51.113e-1138.27p-hydroxybenzoic acid efflux pump subunit aaeA OS=... [more]
AAEA_YERPY1.453e-1139.24p-hydroxybenzoic acid efflux pump subunit aaeA OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-005-E12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728566 ID=EY728566; Name=EY728566; organism=Citrus sinensis; type=EST; length=881bp
CCAGCTCGTTCTACGTCGAAGGCTATTTCGAGGAAACCAAGCTGCCCGGC
ATCCACGAAGGCGCCCCCGTGACCGTGACGCTGATGGGTGACAACCGCCA
GATCCGCGGCCACGTCGAGAGCATCGCGCTGGGCATCGCCGACCGCGAAC
GCGGCACCGGCGCCAACCTGCTGGCCAACGTCAACCCGACCTTCAACTGG
GTGCGCCTGGCGCAGCGCATCCCGGTGCGCGTGAAGATCGACGAAATCCC
CACCGGCGTGCGCCTGGTGGCCGGCCAGACCGCCACCGTCGCGGTCGGCG
CCGCCGCCGCGCCCGCACAGACGCATACCGACGCGCGCCCACCGTCCTGA
ACACGCCTTTTTTGCGAACCCGCGAATCTCCTAGACAACGCCGAGCCGTA
GTCGCCATGATCACCACATGCTTCCTGCCGCTGATGCTGTCCGCCGCATT
GGCCGGATGCGCCGCCCGGGGCCCGGACTACCACGTGCCCGGCGGATCGG
CCGCCATCCGCCCATGAGCCCGCGGCCGGCCGCCGGGGCCGCGGCAAGGC
TCTTGTGAGCGCTAGGCGGGGGCGCGGCGGCGCCGGGCCCGCGCGCGCCA
GGCCGCCGCGACGCCACAGCGCGGGCCGGGCCTCACCGTGGCGTGGCGGG
CGCCCCGCGCGGTCCGGGGCGGGGCCCGCGGCGCGGGCGCGTCCCCGTCG
TGCCTGGGCGAGGGTGTTTCGGTGCAGCGGCGGGCCGCGGGGCGGCGCGG
CGCCCGGGCAGCGGCGGAGCGGCGCTGTCGCGGTTGGGTGCACGTAGAGG
CGCGCACGGCGCGGGCGAGACGTGGTGGTTCGCGTGTCGGGCGACTCCTC
GCACGGCGGCAAGCCCGGGCCGCCGCGAGCA
back to top