EY728556

Overview
NameEY728556
Unique NameEY728556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728556 vs. ExPASy Swiss-Prot
Match: AP2MA_DANRE (AP-2 complex subunit mu-1-A OS=Danio rerio GN=ap2m1a PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 8.342e-66
Identity = 127/285 (44.56%), Postives = 187/285 (65.61%), Query Frame = 1
Query:   16 EIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQ--LKSRPTKSGK-TIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTRMEVXVKIKSVFGAKMFALGVVIKIPVPKQTAKNSFXVTSGRAKYNASIDCLVLEDKKISRTTEPP*LXRLS*FHNGRKETWTRHQSMDFRFHVP 861
            EI+DFGYPQN     LK +ITQ+G++    +K     +   T QVTG +GWRREG+ Y++NE+FLD++ESVNLLMS +G VL   V+G+++MK +LSGMP+ K G+NDKI ++K+ +        KSGK +I +DD TFHQCV L++F+SE+++SF+PPDGE+ELM+YR T+ + LPFRV+P ++E+GRT++EV V IKS F   + A  + ++IP P  T+        G+AKY AS + +V + K+++   E      +       K+ W R   +   F VP
Sbjct:  114 EILDFGYPQNSETGALKTFITQQGIKGQHQTKEEQSQI---TSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIDKQGKGGTTDDAGKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEYELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWAR-PPISMNFEVP 394          
BLAST of EY728556 vs. ExPASy Swiss-Prot
Match: AP2MB_DANRE (AP-2 complex subunit mu-1-B OS=Danio rerio GN=ap2m1b PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 1.089e-65
Identity = 128/285 (44.91%), Postives = 187/285 (65.61%), Query Frame = 1
Query:   16 EIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQ--LKSRPTKSGK-TIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTRMEVXVKIKSVFGAKMFALGVVIKIPVPKQTAKNSFXVTSGRAKYNASIDCLVLEDKKISRTTEPP*LXRLS*FHNGRKETWTRHQSMDFRFHVP 861
            EI+DFGYPQN     LK +ITQ+G++S   +K     +   T QVTG +GWRREG+ Y++NE+FLD++ESVNLLMS +G VL   V+G+++MK +LSGMP+ K G+NDKI ++K+ +        KSGK +I +DD TFHQCV L++F+SE+++SF+PPDGE+ELM+YR T+ + LPFRV+P ++E+GRT++EV V IKS F   + A  + ++IP P  T+        G+AKY AS + +V + K++    E      +       K+ W R   +   F VP
Sbjct:  114 EILDFGYPQNSETGALKTFITQQGIKSQHLTKEEQSQI---TSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIDKQGKGGTTDDTGKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEYELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMVGMKESQISAEIELLPTNDKKKWAR-PPISMNFEVP 394          
BLAST of EY728556 vs. ExPASy Swiss-Prot
Match: AP2M_CAEEL (AP-2 complex subunit mu OS=Caenorhabditis elegans GN=dpy-23 PE=2 SV=2)

HSP 1 Score: 244.973 bits (624), Expect = 4.577e-64
Identity = 126/287 (43.90%), Postives = 181/287 (63.07%), Query Frame = 1
Query:   16 EIMDFGYPQNLSPEILKLYITQEGVRSPFSSKP-TDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKSR-PTKSGKT-IELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTRMEVXVKIKSVFGAKMFALGVVIKIPVPKQTAKNSFXVTSGRAKYNASIDCLVLEDKKISRTTEPP*LXRLS*FHNG--RKETWTRHQSMDFRFHVP 861
            EI+DFGYPQN  P +LK +ITQ+GVR+  +  P T       T QVTG +GWRREG+ Y++NE+FLD++E VNLLM+ +G VL   V GK+ MK +LSGMP+ K G+NDKI +E +S+  S  P K+ +  + +DD  FHQCV LT+F +E  +SF+PPDGE+ELM+YR T+ + LPFRV+P ++E+ R +MEV V +KS F   + A  + ++IP P  T+        G+AKY A  + +V + K+++   E      +     G   K+ W R   +   F VP
Sbjct:  114 EILDFGYPQNTDPGVLKTFITQQGVRTADAPVPVTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVIEYVNLLMNQQGQVLSAHVAGKVAMKSYLSGMPECKFGINDKITIEGKSKPGSDDPNKASRAAVAIDDCQFHQCVKLTKFETEHAISFIPPDGEYELMRYRTTKDIQLPFRVIPLVREVSRNKMEVKVVVKSNFKPSLLAQKLEVRIPTPPNTSGVQLICMKGKAKYKAGENAIVWKIKRMAGMKESQISAEIDLLSTGNVEKKKWNR-PPVSMNFEVP 399          
BLAST of EY728556 vs. ExPASy Swiss-Prot
Match: AP1M1_HUMAN (AP-1 complex subunit mu-1 OS=Homo sapiens GN=AP1M1 PE=1 SV=3)

HSP 1 Score: 209.149 bits (531), Expect = 2.783e-53
Identity = 112/232 (48.28%), Postives = 149/232 (64.22%), Query Frame = 1
Query:   16 EIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTRMEVXVKIKSVFGAKMFALGVVIKIPVPKQTAKNSFXVTSGRAKY 711
            E+MDFGYPQ    +IL+ YITQEG +       T  P P AT  VT AV WR EG+ Y+KNEVFLD++ESVNLL+S+ G+VLR ++ G I M+ FLSGMP+L+LGLNDK+  +   + KS      K++EL+DV FHQCV L+RF +++T+SF+PPDGEFELM YR+   V     +   I++   +R+E  +K KS F  +  A  V I IPVP       F  T G  K+
Sbjct:  116 ELMDFGYPQTTDSKILQEYITQEGHKLE-----TGAPRPPAT--VTNAVSWRSEGIKYRKNEVFLDVIESVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKS------KSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMIKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKW 334          
BLAST of EY728556 vs. ExPASy Swiss-Prot
Match: AP1M1_BOVIN (AP-1 complex subunit mu-1 OS=Bos taurus GN=AP1M1 PE=1 SV=3)

HSP 1 Score: 209.149 bits (531), Expect = 2.783e-53
Identity = 112/232 (48.28%), Postives = 149/232 (64.22%), Query Frame = 1
Query:   16 EIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTRMEVXVKIKSVFGAKMFALGVVIKIPVPKQTAKNSFXVTSGRAKY 711
            E+MDFGYPQ    +IL+ YITQEG +       T  P P AT  VT AV WR EG+ Y+KNEVFLD++ESVNLL+S+ G+VLR ++ G I M+ FLSGMP+L+LGLNDK+  +   + KS      K++EL+DV FHQCV L+RF +++T+SF+PPDGEFELM YR+   V     +   I++   +R+E  +K KS F  +  A  V I IPVP       F  T G  K+
Sbjct:  116 ELMDFGYPQTTDSKILQEYITQEGHKLE-----TGAPRPPAT--VTNAVSWRSEGIKYRKNEVFLDVIESVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKS------KSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMIKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKW 334          
BLAST of EY728556 vs. ExPASy Swiss-Prot
Match: AP1M_DICDI (AP-1 complex subunit mu OS=Dictyostelium discoideum GN=apm1 PE=1 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 4.748e-53
Identity = 111/240 (46.25%), Postives = 149/240 (62.08%), Query Frame = 1
Query:   16 EIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTRMEVXVKIKSVFGAKMFALGVVIKIPVPKQTAKNSFXVTSGRAKYNASIDCLV 735
            E+MDFGYPQ+  P+IL+ YITQEG +    ++    P       +TGAV WR+EG+ Y KNEVFLD+VES+NLL+S+ G+VLR ++ G + MK  LSGMP+L+LGLNDKI  E  ++  +     GK +EL+DV FHQCV L++F +++T+SF+PPDGEFELM YR+   V     V         +R+E  VK KS F  K  A  V I +PVP       F  T G  KY    D ++
Sbjct:  115 EMMDFGYPQSTEPKILQEYITQEGYKLERGARGMVLPAA-----ITGAVSWRKEGIKYNKNEVFLDVVESINLLVSANGTVLRSEIVGAVKMKSKLSGMPELRLGLNDKILFENSAKTGA---PKGKGVELEDVKFHQCVRLSKFENDRTISFIPPDGEFELMSYRLNTTVKPLIWVECISDTHAHSRVEYMVKAKSQFKGKSIANNVEIIVPVPPDADTPKFRCTVGTCKYAPEKDAII 346          
BLAST of EY728556 vs. ExPASy Swiss-Prot
Match: AP1M1_RAT (AP-1 complex subunit mu-1 OS=Rattus norvegicus GN=Ap1m1 PE=1 SV=3)

HSP 1 Score: 208.379 bits (529), Expect = 4.748e-53
Identity = 112/232 (48.28%), Postives = 149/232 (64.22%), Query Frame = 1
Query:   16 EIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTRMEVXVKIKSVFGAKMFALGVVIKIPVPKQTAKNSFXVTSGRAKY 711
            E+MDFGYPQ    +IL+ YITQEG +       T  P P AT  VT AV WR EG+ Y+KNEVFLD++E+VNLL+S+ G+VLR ++ G I M+ FLSGMP+L+LGLNDK+  +   + KS      K++EL+DV FHQCV L+RF +++T+SF+PPDGEFELM YR+   V     +   I++   +R+E  VK KS F  +  A  V I IPVP       F  T G  K+
Sbjct:  116 ELMDFGYPQTTDSKILQEYITQEGHKLE-----TGAPRPPAT--VTNAVSWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKS------KSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKW 334          
BLAST of EY728556 vs. ExPASy Swiss-Prot
Match: AP1M1_MOUSE (AP-1 complex subunit mu-1 OS=Mus musculus GN=Ap1m1 PE=1 SV=3)

HSP 1 Score: 208.379 bits (529), Expect = 4.748e-53
Identity = 112/232 (48.28%), Postives = 149/232 (64.22%), Query Frame = 1
Query:   16 EIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTRMEVXVKIKSVFGAKMFALGVVIKIPVPKQTAKNSFXVTSGRAKY 711
            E+MDFGYPQ    +IL+ YITQEG +       T  P P AT  VT AV WR EG+ Y+KNEVFLD++E+VNLL+S+ G+VLR ++ G I M+ FLSGMP+L+LGLNDK+  +   + KS      K++EL+DV FHQCV L+RF +++T+SF+PPDGEFELM YR+   V     +   I++   +R+E  VK KS F  +  A  V I IPVP       F  T G  K+
Sbjct:  116 ELMDFGYPQTTDSKILQEYITQEGHKLE-----TGAPRPPAT--VTNAVSWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKS------KSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKW 334          
BLAST of EY728556 vs. ExPASy Swiss-Prot
Match: AP1M2_BOVIN (AP-1 complex subunit mu-2 OS=Bos taurus GN=AP1M2 PE=1 SV=3)

HSP 1 Score: 202.216 bits (513), Expect = 3.403e-51
Identity = 105/232 (45.26%), Postives = 149/232 (64.22%), Query Frame = 1
Query:   16 EIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTRMEVXVKIKSVFGAKMFALGVVIKIPVPKQTAKNSFXVTSGRAKY 711
            E+MDFG+PQ    +IL+ YITQ+G +         R  P     VT AV WR EG+ YKKNEVF+D++ESVNLL+++ GSVL  ++ G I +K FLSGMP+L+LGLND++  E   + K+      K++EL+DV FHQCV L+RF++++T+SF+PPDG+FELM YR++  V     +   I++   +R+E+ VK K  F  +  A GV I +PVP       F  + G AKY
Sbjct:  116 ELMDFGFPQTTDSKILQEYITQQGNKLETGKS---RVPPT----VTNAVSWRSEGIKYKKNEVFIDVIESVNLLVNANGSVLLSEIVGSIKLKVFLSGMPELRLGLNDRVLFELTGRSKN------KSVELEDVKFHQCVRLSRFDNDRTISFIPPDGDFELMSYRLSTQVKPLIWIESVIEKFSHSRVEIMVKAKGQFKKQSVANGVEISVPVPSDADSPRFKTSVGSAKY 334          
BLAST of EY728556 vs. ExPASy Swiss-Prot
Match: AP1M2_MOUSE (AP-1 complex subunit mu-2 OS=Mus musculus GN=Ap1m2 PE=1 SV=3)

HSP 1 Score: 201.83 bits (512), Expect = 4.444e-51
Identity = 105/232 (45.26%), Postives = 149/232 (64.22%), Query Frame = 1
Query:   16 EIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTRMEVXVKIKSVFGAKMFALGVVIKIPVPKQTAKNSFXVTSGRAKY 711
            E+MDFG+PQ    +IL+ YITQ+G +         R  P     VT AV WR EG+ YKKNEVF+D++ESVNLL+++ GSVL  ++ G I +K FLSGMP+L+LGLND++  E   + K+      K++EL+DV FHQCV L+RF++++T+SF+PPDG+FELM YR++  V     +   I++   +R+E+ VK K  F  +  A GV I +PVP       F  + G AKY
Sbjct:  116 ELMDFGFPQTTDSKILQEYITQQGNKLETGKS---RVPPT----VTNAVSWRSEGIKYKKNEVFIDVIESVNLLVNANGSVLLSEIVGTIKLKVFLSGMPELRLGLNDRVLFELTGRSKN------KSVELEDVKFHQCVRLSRFDNDRTISFIPPDGDFELMSYRLSTQVKPLIWIESVIEKFSHSRVEIMVKAKGQFKKQSVANGVEISVPVPSDADSPRFKTSVGSAKY 334          
The following BLAST results are available for this feature:
BLAST of EY728556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
AP2MA_DANRE8.342e-6644.56AP-2 complex subunit mu-1-A OS=Danio rerio GN=ap2m... [more]
AP2MB_DANRE1.089e-6544.91AP-2 complex subunit mu-1-B OS=Danio rerio GN=ap2m... [more]
AP2M_CAEEL4.577e-6443.90AP-2 complex subunit mu OS=Caenorhabditis elegans ... [more]
AP1M1_HUMAN2.783e-5348.28AP-1 complex subunit mu-1 OS=Homo sapiens GN=AP1M1... [more]
AP1M1_BOVIN2.783e-5348.28AP-1 complex subunit mu-1 OS=Bos taurus GN=AP1M1 P... [more]
AP1M_DICDI4.748e-5346.25AP-1 complex subunit mu OS=Dictyostelium discoideu... [more]
AP1M1_RAT4.748e-5348.28AP-1 complex subunit mu-1 OS=Rattus norvegicus GN=... [more]
AP1M1_MOUSE4.748e-5348.28AP-1 complex subunit mu-1 OS=Mus musculus GN=Ap1m1... [more]
AP1M2_BOVIN3.403e-5145.26AP-1 complex subunit mu-2 OS=Bos taurus GN=AP1M2 P... [more]
AP1M2_MOUSE4.444e-5145.26AP-1 complex subunit mu-2 OS=Mus musculus GN=Ap1m2... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-005-D12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728556 ID=EY728556; Name=EY728556; organism=Citrus sinensis; type=EST; length=920bp
CCACGCGTCCGTGCAGAAATCATGGACTTTGGTTACCCGCAGAATCTCTC
TCCTGAGATTTTAAAGCTTTATATCACTCAAGAAGGGGTGCGGTCACCAT
TTTCATCCAAGCCTACAGATAGACCTGTCCCTAATGCAACTTTACAAGTT
ACGGGTGCAGTTGGTTGGCGTAGAGAGGGACTTGTTTACAAGAAAAATGA
GGTCTTTCTTGATATTGTGGAAAGTGTAAATCTTCTGATGTCTTCAAAAG
GTAGTGTTCTACGTTGTGATGTAACGGGGAAGATTCTTATGAAATGCTTC
CTCTCGGGAATGCCTGATTTGAAGTTAGGTTTAAATGACAAAATTGGCCT
TGAGAAGGAGTCACAGCTGAAATCACGTCCTACTAAGAGTGGTAAAACAA
TTGAGCTTGATGATGTTACTTTCCATCAATGCGTAAACTTGACAAGGTTT
AACTCGGAGAAGACAGTGAGTTTTGTGCCACCAGATGGTGAATTTGAATT
GATGAAGTATCGTATCACCGAGGGTGTAAATCTTCCATTCCGTGTCTTGC
CAACTATTAAGGAACTTGGTCGAACACGTATGGAAGTANATGTNAAGATA
AAGAGTGTCTTTGGTGCAAAAATGTTTGCGCTTGGGGTTGTCATCAAAAT
TCCTGTACCAAAACAGACGGCAAAGAACAGTTTCCANGTGACATCAGGGC
GGGCAAAGTACAATGCTTCAATTGATTGCTTGGTTTTGGAAGATAAAAAA
ATTTCCAGGACAACTGAGCCACCATGATTGCNAAGGTTGAGTTGATTTCA
CAATGGGCGAAAAGAAACGTGGACAAGGCACCAATCAATGGATTTCAGGT
TCCATGTTCCCGCTCCAGGTTACTGTCCGTTTCTCAGGTTGGGAGAAAAT
GGTACATACGTTGATTGGTC
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