EY728556

Overview
NameEY728556
Unique NameEY728556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728556 vs. ExPASy Swiss-Prot
Match: AP1M2_HUMAN (AP-1 complex subunit mu-2 OS=Homo sapiens GN=AP1M2 PE=1 SV=4)

HSP 1 Score: 200.29 bits (508), Expect = 1.293e-50
Identity = 103/232 (44.40%), Postives = 147/232 (63.36%), Query Frame = 1
Query:   16 EIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTRMEVXVKIKSVFGAKMFALGVVIKIPVPKQTAKNSFXVTSGRAKY 711
            E+MDFG+PQ    +IL+ YITQ+       S   +         VT AV WR EG+ YKKNEVF+D++ESVNLL+++ GSVL  ++ G I +K FLSGMP+L+LGLND++  E   + K+      K++EL+DV FHQCV L+RF++++T+SF+PPDG+FELM YR++  V     +   I++   +R+E+ VK K  F  +  A GV I +PVP       F  + G AKY
Sbjct:  116 ELMDFGFPQTTDSKILQEYITQQ-------SNKLETGKSRVPPTVTNAVSWRSEGIKYKKNEVFIDVIESVNLLVNANGSVLLSEIVGTIKLKVFLSGMPELRLGLNDRVLFELTGRSKN------KSVELEDVKFHQCVRLSRFDNDRTISFIPPDGDFELMSYRLSTQVKPLIWIESVIEKFSHSRVEIMVKAKGQFKKQSVANGVEISVPVPSDADSPRFKTSVGSAKY 334          
BLAST of EY728556 vs. ExPASy Swiss-Prot
Match: AP1M_CAEEL (AP-1 complex subunit mu-1-I OS=Caenorhabditis elegans GN=unc-101 PE=2 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 1.095e-49
Identity = 102/232 (43.97%), Postives = 146/232 (62.93%), Query Frame = 1
Query:   16 EIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTRMEVXVKIKSVFGAKMFALGVVIKIPVPKQTAKNSFXVTSGRAKY 711
            E+MDFG+PQ     IL+ YITQEG +   + +P         + VT AV WR EG+ Y+KNEVFLD++ESVN+L S+ G+VL+ ++ G + M+ +L+GMP+L+LGLNDK+  E   + KS      K++EL+DV FHQCV L+RF++++T+SF+PPDG FELM YR+T  V     +  +I+    +R+   +K KS F  +  A  V I IPVP       F  + G  KY
Sbjct:  116 EMMDFGFPQTTESRILQEYITQEGQKLISAPRPP--------MAVTNAVSWRSEGIKYRKNEVFLDVIESVNMLASANGTVLQSEIVGSVKMRVYLTGMPELRLGLNDKVLFEGSGRGKS------KSVELEDVKFHQCVRLSRFDTDRTISFIPPDGAFELMSYRLTTVVKPLIWIETSIERHSHSRVSFIIKAKSQFKRRSTANNVEIIIPVPSDADSPKFKTSIGSVKY 333          
BLAST of EY728556 vs. ExPASy Swiss-Prot
Match: AP1M1_SCHPO (AP-1 complex subunit mu-1 OS=Schizosaccharomyces pombe GN=apm1 PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.581e-48
Identity = 104/248 (41.94%), Postives = 154/248 (62.10%), Query Frame = 1
Query:   16 EIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVN-LPFRVLPTIKELGRTRMEVXVKIKSVFGAKMFALGVVIKIPVPKQTAKNSFXVTSGRAKYNASIDCLVLEDKKIS 756
            EIMDFG+PQ    +IL+ YITQ       +S    +  P   + +T A+ WR EG+ Y+KNEVFLD++ESVNL+ ++ G+V++ ++ GK+ +KC+LSGMP+L+LGLNDK+  E   +     T  G T+E++DV FHQCV L RF +++T+SF+PPDGEF+LM YR++  V  L +    +I   G +R+E  VK K+ F  +  A  V I IPVP+      F  ++G  +Y      +V   KK +
Sbjct:  116 EIMDFGFPQTTETKILQEYITQ-------TSNTVKKHAP-PPIAMTNAISWRSEGIHYRKNEVFLDVIESVNLIAAADGTVIQSEILGKVRLKCYLSGMPELRLGLNDKVLFEAAGR-----TIKGNTVEMEDVKFHQCVRLARFENDRTISFIPPDGEFDLMSYRMSSNVRPLIWVECESIVHSG-SRIEFMVKAKAQFKKRCIANNVQIIIPVPEDADSPRFQTSNGHVQYAPEQAAMVWNIKKFA 349          
BLAST of EY728556 vs. ExPASy Swiss-Prot
Match: AP2M_SCHPO (AP-2 complex subunit mu OS=Schizosaccharomyces pombe GN=apm4 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.432e-42
Identity = 90/248 (36.29%), Postives = 147/248 (59.27%), Query Frame = 1
Query:   16 EIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRP-----VPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLE-KESQLKSRPTKS-------GKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTRMEVXVKIKSVFGAKMFALGVVIKIPVPKQTAKNSFXVTSGRAKYNAS 720
            E++D+G  Q   P+ L   ++   V+   ++    R          + ++ G+V WRR G+ Y+KN +++DIVE +NLL+SS G+VLR DV+G + M+  LSGMP+ + GLNDK+  + K+S+ KS+   S       G  + L+D  FHQCV L  F +E  ++F+PPDGE ELM YR  E +N+PFR++P +++L + ++   + I++ +  K+ +  +  +IPVP    K +  V  G+A Y  S
Sbjct:  113 EMIDYGIIQTTEPDALARSVSITAVKKKGNALSLKRSHSSQLAHTTSSEIPGSVPWRRAGIKYRKNSIYIDIVERMNLLISSTGNVLRSDVSGVVKMRAMLSGMPECQFGLNDKLDFKLKQSESKSKSNNSRNPSSVNGGFVILEDCQFHQCVRLPEFENEHRITFIPPDGEVELMSYRSHENINIPFRIVPIVEQLSKQKIIYRISIRADYPHKL-SSSLNFRIPVPTNVVKANPRVNRGKAGYEPS 359          
BLAST of EY728556 vs. ExPASy Swiss-Prot
Match: AP1M1_YEAST (AP-1 complex subunit mu-1-I OS=Saccharomyces cerevisiae GN=APM1 PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 1.097e-41
Identity = 99/258 (38.37%), Postives = 141/258 (54.65%), Query Frame = 1
Query:   16 EIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEK--------------------ESQLKSRPTKSGKT------IELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTRMEVXVKIKSVFGAKMFALGVVIKIPVPKQTAKNSFXVTSGRAKY 711
            E+MD+G PQ    ++LK YITQ+  +   S+K   R      + +T +V WR EG+ +KKNE FLDIVES+N+LM+ KG VLR ++ G + +   LSGMPDLKLG+NDK    K                    E+  K   T S  T      IEL+D+ FHQCV L++F +EK ++F+PPDG+F+LM YR++  +         ++    +R+E+  K K+    K  A  V I IPVP      +F  + G  KY
Sbjct:  117 EVMDYGIPQITETKMLKQYITQKSFKLVKSAKKK-RNATRPPVALTNSVSWRPEGITHKKNEAFLDIVESINMLMTQKGQVLRSEIIGDVKVNSKLSGMPDLKLGINDKGIFSKYLDDDTNIPSASATTSDNNTETDKKPSITSSSATNKKKVNIELEDLKFHQCVRLSKFENEKIITFIPPDGKFDLMNYRLSTTIKPLIWCDVNVQVHSNSRIEIHCKAKAQIKRKSTATNVEILIPVPDDADTPTFKYSHGSLKY 373          
BLAST of EY728556 vs. ExPASy Swiss-Prot
Match: AP2M_YEAST (AP-2 complex subunit mu OS=Saccharomyces cerevisiae GN=APM4 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.936e-34
Identity = 76/221 (34.39%), Postives = 121/221 (54.75%), Query Frame = 1
Query:  160 VGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKSR-----------------PTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGR-TRMEVXVKIKSVFGAKMFALGVVIKIPVPKQTAKNSFXVTSGRAKYNASIDCLVLEDKKISRTTE 768
            + WR +G+++KK+EVFL + E +N+L+S  GS+L+  V G I +   LSG P  + GLND +G++ E + K                   P  +  ++ L+D  FH+CV+L +FN    + FVPPDG  ELMKY + + +NLPF+V P +    R   ++  + +KS+F  K+ A  VV+ IPVP  T      V++G  K+    + ++    K +  TE
Sbjct:  198 ITWRPKGIIHKKDEVFLYVNERINILVSRDGSILKSYVDGTIDITTHLSGTPICRFGLNDSLGMQSEDEKKWLAQQQRHSGSDFGNKNFIPKAAAGSVLLEDCKFHECVSLDKFNRNHIIEFVPPDGSMELMKYHVRDNINLPFKVTPIVTHSTRDNEIDYRITLKSLFPGKLSAKDVVLHIPVPPSTVDCKISVSNGHCKFVPEENAMIWRFNKYNGLTE 418          
BLAST of EY728556 vs. ExPASy Swiss-Prot
Match: AP4M1_HUMAN (AP-4 complex subunit mu-1 OS=Homo sapiens GN=AP4M1 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 4.948e-26
Identity = 80/256 (31.25%), Postives = 138/256 (53.91%), Query Frame = 1
Query:   16 EIMDFGYPQNLSPEILKLYITQEGVRS-PFS---------------------SKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGV--NLPFRVLPTIK-ELGRTRMEVXVKIKSVFGAKMFALGVVIKIPVPKQTAKNSFXVTSGRAK 708
            E++D+GY Q  S E+L+ +I  E V S PFS                     S    RPV ++    +            +KNEVFLD+VE +++L++S GS+L+ DV G+I +K FL    ++++GL ++  + K S+L+      G  I +D+V+FH  VNL  F S + +   PP GE  +M+Y++++ +   LPFR+ P+++ + G  R++V +K++    +K  AL V + +P+P+     S  ++S   K
Sbjct:  115 EVLDYGYVQTTSTEMLRNFIQTEAVVSKPFSLFDLSSVGLFGAETQQSKVAPSSAASRPVLSSRSDQS------------QKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFCVGK-SELRG----YGPGIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTVMRYQLSDDLPSPLPFRLFPSVQWDRGSGRLQVYLKLRCDLLSKSQALNVRLHLPLPRGVVSLSQELSSPEQK 353          
BLAST of EY728556 vs. ExPASy Swiss-Prot
Match: AP3M_DICDI (AP-3 complex subunit mu OS=Dictyostelium discoideum GN=apm3 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.439e-26
Identity = 78/240 (32.50%), Postives = 119/240 (49.58%), Query Frame = 1
Query:   16 EIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRP-----VPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVN-LPFRVLPTI------KELGRTRMEVXVKIKSVFGAKMFALGVVIKIPVPKQTAKNSFXVTSG 699
            E+ D G+P       LK  I   GV S   S  T        +PN +L   GA+ WR+ G+ Y +N++F DI+E ++ ++ S G ++  ++ G+IL  C LSGMPDL +  N+                      LDDV+FH CV  +R+ +++ +SF+PPDG F+L+ YR+ +G+N  P  V P I        +GR  + V  K  +V   K+    VV  IP  K T+  +     G
Sbjct:  117 EMADNGFPFTTELNFLKEMIKPPGVLSNVISSVTGTSNITDILPNGSL---GAIQWRKTGIKYTQNKIFFDIIEEIDCIIDSNGYIVSSEINGEILCHCNLSGMPDLTMTFNN-------------------PRMLDDVSFHPCVRYSRWENDRVLSFIPPDGNFKLLSYRV-KGINQFPVYVKPQISYSEGSSSVGRVNVTVGAKGYNVQN-KLSIEDVVATIPFSKTTSSTNLTANIG 332          
BLAST of EY728556 vs. ExPASy Swiss-Prot
Match: AP4M1_BOVIN (AP-4 complex subunit mu-1 OS=Bos taurus GN=AP4M1 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.455e-25
Identity = 79/256 (30.86%), Postives = 136/256 (53.12%), Query Frame = 1
Query:   16 EIMDFGYPQNLSPEILKLYITQEGVRS-PFS---------------------SKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGV--NLPFRVLPTIK-ELGRTRMEVXVKIKSVFGAKMFALGVVIKIPVPKQTAKNSFXVTSGRAK 708
            E++D+GY Q  S E+L+ +I  E V S PFS                     S    RPV ++    +            +KNEVFLD+VE +++L++S GS+L+ DV G+I +K FL    ++++GL ++  + K S+L+      G  I +D+V+FH  V L  F S + +   PP GE  +M+Y++++ +   LPFR+ P+++ + G  R++V +K++     K  AL V + +P+P+     S  ++S   K
Sbjct:  115 EVLDYGYVQTTSTEVLRNFIQTEAVVSKPFSLFDLSSVGLFGAETQQSKVAPSSAASRPVLSSRSDQS------------QKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFCVGK-SELRG----YGPGIRVDEVSFHSSVYLDEFESHRILRLQPPQGELTVMRYQLSDDLPSPLPFRLFPSVQWDRGSGRLQVYLKLRCDLPPKSQALNVRLHLPLPRGVVSLSQELSSPEQK 353          
BLAST of EY728556 vs. ExPASy Swiss-Prot
Match: AP4M1_RAT (AP-4 complex subunit mu-1 OS=Rattus norvegicus GN=Ap4m1 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.188e-25
Identity = 76/252 (30.16%), Postives = 135/252 (53.57%), Query Frame = 1
Query:   16 EIMDFGYPQNLSPEILKLYI-TQEGVRSPFS---------------------SKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGV--NLPFRVLPTIK-ELGRTRMEVXVKIKSVFGAKMFALGVVIKIPVPKQTAKNSFXVTS 696
            E++D+GY Q  S ++L+ +I T+  V  PFS                     S    RPV ++    +            +KNEVFLD+VE +++L++S GS+L+ DV G+I +K FL    ++ +GL ++  + K S+L+      G  I +D+V+FH  VNL  F S + +   PP GE  +M+Y++++ +   LPFR+ P+++ + G  R++V +K++     K  AL + + +P+P+     S  ++S
Sbjct:  115 EVLDYGYVQTTSTDMLRNFIQTEAAVSKPFSLFDLSSVGLFGAETQQNRVAPSSAASRPVLSSRSDQS------------QKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSSSEICIGLTEEFCVGK-SELRG----YGPGIRVDEVSFHSSVNLDEFESHRILHLQPPQGELTVMRYQLSDDLPSPLPFRLFPSVQWDQGSGRLQVYLKLRCDLPPKSQALNIHLHLPLPRGVVSLSQELSS 349          
The following BLAST results are available for this feature:
BLAST of EY728556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
AP1M2_HUMAN1.293e-5044.40AP-1 complex subunit mu-2 OS=Homo sapiens GN=AP1M2... [more]
AP1M_CAEEL1.095e-4943.97AP-1 complex subunit mu-1-I OS=Caenorhabditis eleg... [more]
AP1M1_SCHPO1.581e-4841.94AP-1 complex subunit mu-1 OS=Schizosaccharomyces p... [more]
AP2M_SCHPO6.432e-4236.29AP-2 complex subunit mu OS=Schizosaccharomyces pom... [more]
AP1M1_YEAST1.097e-4138.37AP-1 complex subunit mu-1-I OS=Saccharomyces cerev... [more]
AP2M_YEAST4.936e-3434.39AP-2 complex subunit mu OS=Saccharomyces cerevisia... [more]
AP4M1_HUMAN4.948e-2631.25AP-4 complex subunit mu-1 OS=Homo sapiens GN=AP4M1... [more]
AP3M_DICDI8.439e-2632.50AP-3 complex subunit mu OS=Dictyostelium discoideu... [more]
AP4M1_BOVIN2.455e-2530.86AP-4 complex subunit mu-1 OS=Bos taurus GN=AP4M1 P... [more]
AP4M1_RAT4.188e-2530.16AP-4 complex subunit mu-1 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-005-D12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728556 ID=EY728556; Name=EY728556; organism=Citrus sinensis; type=EST; length=920bp
CCACGCGTCCGTGCAGAAATCATGGACTTTGGTTACCCGCAGAATCTCTC
TCCTGAGATTTTAAAGCTTTATATCACTCAAGAAGGGGTGCGGTCACCAT
TTTCATCCAAGCCTACAGATAGACCTGTCCCTAATGCAACTTTACAAGTT
ACGGGTGCAGTTGGTTGGCGTAGAGAGGGACTTGTTTACAAGAAAAATGA
GGTCTTTCTTGATATTGTGGAAAGTGTAAATCTTCTGATGTCTTCAAAAG
GTAGTGTTCTACGTTGTGATGTAACGGGGAAGATTCTTATGAAATGCTTC
CTCTCGGGAATGCCTGATTTGAAGTTAGGTTTAAATGACAAAATTGGCCT
TGAGAAGGAGTCACAGCTGAAATCACGTCCTACTAAGAGTGGTAAAACAA
TTGAGCTTGATGATGTTACTTTCCATCAATGCGTAAACTTGACAAGGTTT
AACTCGGAGAAGACAGTGAGTTTTGTGCCACCAGATGGTGAATTTGAATT
GATGAAGTATCGTATCACCGAGGGTGTAAATCTTCCATTCCGTGTCTTGC
CAACTATTAAGGAACTTGGTCGAACACGTATGGAAGTANATGTNAAGATA
AAGAGTGTCTTTGGTGCAAAAATGTTTGCGCTTGGGGTTGTCATCAAAAT
TCCTGTACCAAAACAGACGGCAAAGAACAGTTTCCANGTGACATCAGGGC
GGGCAAAGTACAATGCTTCAATTGATTGCTTGGTTTTGGAAGATAAAAAA
ATTTCCAGGACAACTGAGCCACCATGATTGCNAAGGTTGAGTTGATTTCA
CAATGGGCGAAAAGAAACGTGGACAAGGCACCAATCAATGGATTTCAGGT
TCCATGTTCCCGCTCCAGGTTACTGTCCGTTTCTCAGGTTGGGAGAAAAT
GGTACATACGTTGATTGGTC
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